# List of top-scoring protein chains for T0386.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g03A 194 1.37e-16 2f6sA 201 1.44e-16 1d5rA 324 2.07e-01 1d5rA b.7.1.1,c.45.1.1 23181,32697 2b3oA 532 1.19e+00 1avc 673 1.87e+00 1avc a.65.1.1,a.65.1.1 18178,18179 1gwz 299 1.95e+00 2shpA c.45.1.2 32685 1v7rA 186 2.35e+00 c.51.4.1 100482 1te5A 257 4.86e+00 d.153.1.1 106795 1fprA 284 6.45e+00 2shpA c.45.1.2 59949 2gupA 292 7.42e+00 1fnoA 417 7.60e+00 d.58.19.1,c.56.5.4 70145,75841 1ojlA 304 8.12e+00 1q20A 299 1.04e+01 c.37.1.5 95616 1q1qA 350 1.52e+01 c.37.1.5 95599 2gk9A 401 1.68e+01 1k1sA 354 1.77e+01 d.240.1.1,e.8.1.7 90386,90387 1yirA 408 1.81e+01 3kar 346 2.01e+01 1bg2 c.37.1.9 32198 1f9vA 347 2.01e+01 1bg2 c.37.1.9 59745 1f9uA 347 2.01e+01 1bg2 c.37.1.9 59744 1f9wA 347 2.02e+01 1bg2 c.37.1.9 59746 1f9tA 358 2.05e+01 1bg2 c.37.1.9 59743 1ro2A 216 2.37e+01 d.264.1.2 97665 1yuwA 554 2.54e+01 2f2gA 221 2.58e+01 1qqnA 378 2.74e+01 1ba1 c.55.1.1,c.55.1.1 33393,33394 1mkp 144 2.80e+01 1vhrA c.45.1.1 32654 1qqmA 378 2.81e+01 1ba1 c.55.1.1,c.55.1.1 33391,33392 1r1dA 247 2.90e+01 c.69.1.29 96813 1kax 381 2.99e+01 1ba1 c.55.1.1,c.55.1.1 33389,33390 1kay 381 3.00e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1kaz 381 3.15e+01 1ba1 c.55.1.1,c.55.1.1 33383,33384 2cohA 202 3.19e+01 1vixA 420 3.20e+01 c.56.5.4,d.58.19.1 100777,100778 1ngb 386 3.28e+01 1ba1 c.55.1.1,c.55.1.1 33401,33402 1hfc 169 3.35e+01 1hfc d.92.1.11 40335 1jilA 420 3.37e+01 c.26.1.1 66745 1t92A 116 3.45e+01 1nge 386 3.65e+01 1ba1 c.55.1.1,c.55.1.1 33409,33410 1ngc 386 3.68e+01 1ba1 c.55.1.1,c.55.1.1 33411,33412 1m9iA 672 3.69e+01 a.65.1.1,a.65.1.1 74589,74590 1ngf 386 3.69e+01 1ba1 c.55.1.1,c.55.1.1 33405,33406 1ngd 386 3.70e+01 1ba1 c.55.1.1,c.55.1.1 33417,33418 1ba0 386 3.71e+01 1ba1 c.55.1.1,c.55.1.1 33397,33398 1qorA 327 3.75e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1m0uA 249 3.75e+01 a.45.1.1,c.47.1.5 78359,78360 1kanA 253 3.80e+01 1knyA a.24.16.1,d.218.1.1 75878,75879 1nuuA 252 3.80e+01 c.26.1.3 86209 1ngg 386 3.80e+01 1ba1 c.55.1.1,c.55.1.1 33415,33416 1ngh 386 3.82e+01 1ba1 c.55.1.1,c.55.1.1 33413,33414 1ba1 386 3.83e+01 1ba1 c.55.1.1,c.55.1.1 33387,33388 1hpm 386 3.84e+01 1ba1 c.55.1.1,c.55.1.1 33381,33382 1bupA 386 3.86e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1ats 386 3.87e+01 1ba1 c.55.1.1,c.55.1.1 33423,33424 1rttA 193 3.96e+01 c.23.5.4 105098 1qqoA 378 3.97e+01 1ba1 c.55.1.1,c.55.1.1 33395,33396 1o5lA 213 4.00e+01 b.82.3.2 92506 1knyA 253 4.01e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1atr 386 4.07e+01 1ba1 c.55.1.1,c.55.1.1 33421,33422 1f16A 192 4.10e+01 1f16A f.1.4.1 43400 2bupA 381 4.12e+01 1ba1 c.55.1.1,c.55.1.1 33379,33380 1k6dA 220 4.13e+01 c.124.1.2 72082 966c 157 4.20e+01 1hfc d.92.1.11 40338 1ekjA 221 4.23e+01 1ekjB c.53.2.1 33364 1hx1A 400 4.28e+01 1ba1 c.55.1.1,c.55.1.1 61348,61349 1lj9A 144 4.28e+01 a.4.5.28 78035 1fbl 370 4.41e+01 1hfc b.66.1.1,d.92.1.11 27539,40347 1qs2A 401 4.52e+01 1qs1A d.166.1.1,d.166.1.1 42268,42269 1nbmD 480 4.58e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18290,26455,32335 1qs1A 462 4.58e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 2ck3D 482 4.61e+01 1c4zD 154 4.76e+01 1u9aA d.20.1.1 38331 1bhy 482 4.93e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30583,30584,40213 1moq 368 5.03e+01 1moq c.80.1.1 35302 2c1nA 258 5.17e+01 1tuoA 464 5.21e+01 1g8lA 411 5.30e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1uwsA 489 5.33e+01 c.1.8.4 108073 1qjbA 245 5.33e+01 1qjaA a.118.7.1 19202 1hy3A 294 5.36e+01 c.37.1.5 71090 1ojt 482 5.37e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30581,30582,40212 1vg2A 299 5.37e+01 a.128.1.1 108600 1vjiA 372 5.38e+01 c.1.4.1 100813 1nga 386 5.39e+01 1ba1 c.55.1.1,c.55.1.1 33407,33408 1tqhA 247 5.43e+01 c.69.1.29 107225 1fpwA 190 5.46e+01 1rec a.39.1.5 17329 1e79D 482 5.54e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1s9jA 341 5.68e+01 1xqsC 191 5.72e+01 1qvbA 481 5.72e+01 1qvbA c.1.8.4 28983 1g3mA 294 5.76e+01 c.37.1.5 83268 1bqcA 302 5.90e+01 1bqcA c.1.8.3 28831 1oh2Q 413 5.98e+01 f.4.3.2 87007 1z4vA 532 6.04e+01 2f02A 323 6.04e+01 1ynrA 80 6.04e+01 2c3gA 98 6.16e+01 1ayl 541 6.19e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1isiA 265 6.27e+01 e.4.1.1 71394 1os1A 540 6.30e+01 c.91.1.1,c.109.1.1 93467,93468 1ni7A 155 6.35e+01 d.224.1.1 85738 1nxcA 478 6.56e+01 a.102.2.1 92293 1vrdA 494 6.67e+01 1iruC 261 6.79e+01 d.153.1.4 71354 1s70B 299 6.80e+01 d.211.1.1 105317 2spcA 107 6.82e+01 2spcA a.7.1.1 16311 1c8oA 300 6.83e+01 1c8oA e.1.1.1 42677 1ggzA 148 6.88e+01 a.39.1.5 70176 1g6q1 328 6.92e+01 1g6q2 7taa 478 7.02e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1z7qC 258 7.06e+01 1v02A 565 7.08e+01 c.1.8.4 108194 1aj8A 371 7.10e+01 1aj8A a.103.1.1 18900 1ru0A 105 7.10e+01 1qs7A 145 7.16e+01 k.21.1.1 88373 1hkvA 453 7.17e+01 b.49.2.3,c.1.6.1 83559,83560 2fh1A 344 7.30e+01 1bjfA 193 7.39e+01 1rec a.39.1.5 17331 1wkzA 299 7.44e+01 1v02E 565 7.49e+01 c.1.8.4 108198 1qtxA 148 7.50e+01 k.21.1.1 88375 1xmrA 243 7.54e+01 2bsgA 487 7.57e+01 1hqmA 313 7.82e+01 i.8.1.1 45972 1vg3A 299 7.88e+01 a.128.1.1 108601 1vbgA 876 7.89e+01 1rw3A 455 7.93e+01 e.8.1.2 105112 1f0cA 305 8.01e+01 1c8oA e.1.1.1 42676 1rniA 216 8.02e+01 d.264.1.2 97663 1mabB 479 8.02e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18312,26477,32357 1y6nL 145 8.04e+01 1p0iA 529 8.16e+01 c.69.1.1 93867 1cgfA 162 8.17e+01 1hfc d.92.1.11 40339 1wl0A 299 8.20e+01 1on3A 523 8.22e+01 c.14.1.4,c.14.1.4 87107,87108 1nj4A 363 8.23e+01 b.105.1.1,e.3.1.1 80545,80546 1rypC 244 8.39e+01 1rypC d.153.1.4 41934 1g0uB 245 8.41e+01 d.153.1.4 41947 2bnxA 386 8.43e+01 1rkxA 357 8.47e+01 c.2.1.2 97631 1d2fA 390 8.47e+01 1d2fA c.67.1.3 34411 1v4eA 299 8.48e+01 a.128.1.1 100296 1cge 168 8.49e+01 1hfc d.92.1.11 40336 2ftsA 419 8.54e+01 2c3aA 286 8.59e+01 1t3eA 421 8.68e+01 b.85.6.1,b.103.1.1,c.57.1.2 106348,106349,106350 1y1xA 191 8.69e+01 1rfjA 149 8.70e+01 a.39.1.5 104918 2h39A 351 8.74e+01 1v4jA 299 8.76e+01 a.128.1.1 100300 1a6dA 545 8.80e+01 1a6dA a.129.1.2,c.8.5.2,d.56.1.2 19488,30819,38936 1y2qA 143 8.80e+01 2taaA 478 8.84e+01 7taa b.71.1.1,c.1.8.1 27780,28767 1q7eA 428 8.91e+01 c.123.1.1 96035 1oahA 519 8.94e+01 a.138.1.3 86736 1v4hA 299 8.95e+01 a.128.1.1 100298