# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g03A 194 8.83e-24 2f6sA 201 8.10e-23 1d5rA 324 3.96e-05 1d5rA b.7.1.1,c.45.1.1 23181,32697 2b3oA 532 1.42e-01 1knyA 253 2.25e-01 1knyA a.24.16.1,d.218.1.1 75896,75897 2gupA 292 2.80e-01 1zk8A 183 4.17e-01 1pi1A 185 5.01e-01 a.29.7.1 94699 1v7rA 186 6.48e-01 c.51.4.1 100482 1o9iA 266 6.49e-01 a.25.1.3 92671 1jkvA 266 7.01e-01 a.25.1.3 71719 1u24A 337 7.80e-01 1txdA 385 8.45e-01 a.87.1.1,b.55.1.1 107422,107423 1tkeA 224 1.04e+00 1puc 105 1.87e+00 1puc d.97.1.1 40675 1s28A 132 1.96e+00 d.198.1.1 105223 1r2rA 248 2.11e+00 c.1.1.1 96875 2bsjA 133 2.36e+00 1mkp 144 2.40e+00 1vhrA c.45.1.1 32654 2astA 159 2.47e+00 1tph1 247 2.69e+00 1amk 2bshA 125 3.07e+00 1ois 223 3.18e+00 1a36A e.15.1.1 43267 1qf6A 642 3.42e+00 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1rkbA 173 3.52e+00 1xmaA 145 3.91e+00 1bkrA 109 3.93e+00 1bkrA a.40.1.1 17394 1gm5A 780 4.21e+00 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1g8lA 411 5.64e+00 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2f2gA 221 6.02e+00 2aaoA 166 6.11e+00 1q4mA 221 6.27e+00 a.132.1.3 95805 1senA 164 7.53e+00 c.47.1.1 105465 1gpjA 404 7.57e+00 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2b0jA 358 7.75e+00 2bhoA 130 7.93e+00 1uqtA 482 8.72e+00 c.87.1.6 99794 1vmeA 410 8.81e+00 c.23.5.1,d.157.1.3 108893,108894 1g4wR 383 8.89e+00 1g4uS a.24.11.1,c.45.1.2 16644,32692 1kepA 348 9.37e+00 c.2.1.2 68536 1na3A 91 9.91e+00 k.38.1.1 85481 1w6vA 141 1.01e+01 1oheA 348 1.03e+01 c.45.1.1,c.45.1.1 87013,87014 1f0lA 535 1.10e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1yymG 313 1.11e+01 1rm4A 337 1.20e+01 c.2.1.3,d.81.1.1 105000,105001 1sd4A 126 1.21e+01 a.4.5.39 105428 1vhrA 184 1.23e+01 1vhrA c.45.1.1 32651 1t92A 116 1.25e+01 1sxjE 354 1.31e+01 a.80.1.1,c.37.1.20 106089,106090 2bbhA 269 1.33e+01 2cdqA 510 1.36e+01 1f0jA 377 1.46e+01 1f0jA a.211.1.2 19346 1k78A 149 1.57e+01 a.4.1.5,a.4.1.5 68255,68256 1i1iP 681 1.58e+01 1i1iP d.92.1.5 40297 1lkoA 191 1.59e+01 a.25.1.1,g.41.5.1 78063,78064 1jj2B 337 1.59e+01 1ffkB b.43.3.2 63086 1xpxA 163 1.62e+01 1oc2A 348 1.62e+01 c.2.1.2 92765 2a7mA 250 1.65e+01 1s72B 338 1.69e+01 b.43.3.2 105320 1q9uA 130 1.77e+01 d.129.7.1 96314 1aquA 297 1.78e+01 1aquA c.37.1.5 31942 2fnaA 357 1.78e+01 1b71A 191 1.79e+01 1ryt a.25.1.1,g.41.5.1 16647,45246 1vqoB 338 1.80e+01 1rzjG 321 1.82e+01 d.172.1.1 98200 1m9sA 605 1.85e+01 b.1.18.15,b.34.11.1,b.34.11.1,b.34.11.1,c.10.2.1 78874,78875,78876,78877,78878 1t98A 287 1.89e+01 2cw8A 537 1.91e+01 1pea 385 1.93e+01 1pea c.93.1.1 35662 1zx0A 236 1.96e+01 1sg4A 260 1.96e+01 1u0mA 382 2.02e+01 c.95.1.2,c.95.1.2 107557,107558 1lmzA 187 2.06e+01 a.96.1.4 74037 1upkA 341 2.09e+01 a.118.1.15 99758 1ucyH 150 2.23e+01 1ucyH 1fmjA 351 2.24e+01 c.37.1.5 59879 1g9mG 321 2.25e+01 1gc1G d.172.1.1 42492 1hcnB 145 2.40e+01 1hcnB g.17.1.4 44810 1z77A 200 2.48e+01 1vjkA 98 2.54e+01 d.15.3.1 108631 1fpzA 212 2.57e+01 1fpzA c.45.1.1 59976 1w7bA 339 2.59e+01 1mnaA 298 2.66e+01 c.69.1.22 79322 1olrA 224 2.69e+01 b.29.1.11 93330 1y1xA 191 2.78e+01 3sdhA 146 2.79e+01 3sdhA a.1.1.2 14984 1a5t 334 2.89e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1nmeA 146 2.99e+01 c.17.1.1 85874 1yz7A 188 3.06e+01 4enl 436 3.11e+01 4enl c.1.11.1,d.54.1.1 29202,38846 1r6rA 100 3.21e+01 a.190.1.1 97158 2fh7A 595 3.24e+01 4tmkA 213 3.26e+01 5tmpA c.37.1.1 31930 1g3mA 294 3.31e+01 c.37.1.5 83268 1sfxA 109 3.33e+01 a.4.5.50 105505 2dkoA 146 3.35e+01 1auiB 169 3.41e+01 1auiB a.39.1.5 17325 1yuwA 554 3.45e+01 2ac4A 309 3.51e+01 1wh0A 134 3.60e+01 1vlyA 338 3.71e+01 b.44.2.1,d.250.1.1 108871,108872 1nbfA 353 3.75e+01 d.3.1.9 80387 1hr6A 475 3.79e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1j99A 293 3.80e+01 c.37.1.5 71618 1g8iA 190 3.81e+01 1rec a.39.1.5 60363 1r8gA 372 3.81e+01 d.128.1.3 104845 1a6i 217 3.82e+01 2tct a.4.1.9,a.121.1.1 16066,19243 1tpfA 250 3.84e+01 1amk c.1.1.1 28467 1h3nA 878 3.87e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2c3gA 98 3.92e+01 1larA 575 3.92e+01 1larA c.45.1.2,c.45.1.2 32693,32694 2al1A 436 3.93e+01 1hkxA 147 4.06e+01 d.17.4.7 83567 1i1rB 181 4.11e+01 1i1rB a.26.1.1 61548 1nsf 273 4.25e+01 1d2nA c.37.1.20 32429 1d2nA 272 4.35e+01 1d2nA c.37.1.20 32428 1xg2B 153 4.38e+01 1zv1A 65 4.40e+01 1a0p 290 4.40e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 2pgd 482 4.40e+01 2pgd a.100.1.1,c.2.1.6 18778,30190 1y5eA 169 4.47e+01 1njkA 156 4.48e+01 d.38.1.1 85818 1ji6A 589 4.56e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1dozA 309 4.74e+01 1ak1 c.92.1.1 35592 2d2mA 140 4.87e+01 2ac2A 309 5.16e+01 1ryt 190 5.19e+01 1ryt a.25.1.1,g.41.5.1 16646,45245 1jztA 246 5.39e+01 c.104.1.1 63319 1jvr 137 5.49e+01 1jvr a.61.1.2 18132 2shpA 525 5.52e+01 2shpA c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 1ihoA 283 5.54e+01 1ihoA c.26.1.4 62390 1efyA 350 5.66e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1gypA 358 5.93e+01 1dssG c.2.1.3,d.81.1.1 30004,39919 1q2yA 140 6.05e+01 d.108.1.1 95655 1qoiA 177 6.09e+01 2cpl b.62.1.1 27490 1vqrA 297 6.09e+01 1xh3A 276 6.21e+01 1qqeA 292 6.27e+01 1qqeA a.118.8.1 19210 1qgvA 142 6.28e+01 1qgvA c.47.1.8 33056 1r0dA 206 6.30e+01 a.216.1.1 104715 1top 162 6.35e+01 1ncx a.39.1.5 17223 1zu1A 127 6.37e+01 1p5hA 428 6.37e+01 c.123.1.1 87802 1z5zA 271 6.39e+01 2bs3A 656 6.41e+01 1bvyF 191 6.60e+01 1bvyF c.23.5.1 31207 1yhuB 144 6.62e+01 1odzA 386 6.88e+01 c.1.8.3 86889 1nbwA 607 6.95e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1sctB 151 6.97e+01 3sdhA a.1.1.2 15003 6paxA 133 7.02e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 1dbhA 354 7.05e+01 1awe a.87.1.1,b.55.1.1 18514,26967 2b4rO 345 7.13e+01 1r7jA 95 7.21e+01 a.4.5.49 104836 1qg8A 255 7.25e+01 1qg8A c.68.1.1 34505 2tct 207 7.29e+01 2tct a.4.1.9,a.121.1.1 16063,19240 2abk 211 7.39e+01 2abk a.96.1.1 18743 1ad2 228 7.40e+01 1ad2 e.24.1.1 43353 1rovA 857 7.44e+01 a.119.1.1,b.12.1.1 97674,97675 2azeB 106 7.47e+01 1zthA 258 7.51e+01 1kk1A 410 7.52e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1bupA 386 7.70e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2be1A 339 7.78e+01 1px5A 349 7.84e+01 a.160.1.2,d.218.1.6 95277,95278 1o94A 729 7.86e+01 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1gadO 330 7.88e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 2nlrA 234 8.02e+01 2nlrA b.29.1.11 24344 1k28A 584 8.07e+01 b.40.8.1,b.108.1.2,d.2.1.3 68049,68050,68051 1ktbA 405 8.08e+01 b.71.1.1,c.1.8.1 72960,72961 1qusA 322 8.10e+01 1ltm d.2.1.6 36991 1pbyA 489 8.10e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 2fbqA 235 8.15e+01 1j1iA 296 8.25e+01 c.69.1.10 83977 1ydxA 406 8.28e+01 1nb8A 353 8.34e+01 d.3.1.9 80385 1pu6A 218 8.37e+01 a.96.1.5 95123 1yd7A 395 8.40e+01 2tmdA 729 8.53e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1k3tA 359 8.63e+01 c.2.1.3,d.81.1.1 72022,72023 2al2A 436 8.68e+01 1khcA 147 8.68e+01 b.34.9.2 68608 1neeA 138 8.71e+01 d.241.1.1,g.59.1.1 91841,91842 1rk8A 165 8.77e+01 d.58.7.1 97603 1kay 381 8.79e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1djnA 729 8.81e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28612,30313,30598 2c3nA 247 8.85e+01 1vi0A 206 8.97e+01 a.4.1.9,a.121.1.1 100720,100721