# TARGET T0386 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0386.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 5.65111 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.087 0.062 0.016 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.009 0.075 0.701 2 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 3 K 0.004 0.010 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.002 0.046 0.916 4 A 0.045 0.066 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.005 0.074 0.764 5 K 0.090 0.183 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.009 0.119 0.547 6 A 0.155 0.266 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.028 0.016 0.114 0.411 7 K 0.135 0.393 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.020 0.029 0.376 8 T 0.136 0.410 0.008 0.001 0.001 0.001 0.001 0.001 0.010 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.053 0.027 0.027 0.320 9 K 0.104 0.283 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.089 0.033 0.050 0.428 10 N 0.068 0.145 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.068 0.033 0.135 0.534 11 T 0.175 0.102 0.025 0.003 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.099 0.046 0.054 0.488 12 E 0.045 0.090 0.007 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.002 0.008 0.006 0.004 0.177 0.014 0.187 0.449 13 I 0.068 0.040 0.013 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.011 0.022 0.017 0.003 0.088 0.020 0.119 0.586 14 I 0.046 0.052 0.003 0.002 0.002 0.007 0.002 0.003 0.002 0.012 0.005 0.004 0.004 0.002 0.001 0.001 0.428 0.006 0.068 0.350 15 S 0.015 0.027 0.001 0.001 0.001 0.001 0.004 0.001 0.035 0.082 0.039 0.002 0.002 0.001 0.001 0.001 0.114 0.007 0.094 0.574 16 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.004 0.992 17 H 0.009 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.066 0.009 0.405 0.499 18 H 0.348 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.024 0.068 0.108 0.441 19 Y 0.135 0.044 0.006 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.017 0.017 0.038 0.006 0.100 0.012 0.128 0.485 20 V 0.045 0.015 0.011 0.002 0.015 0.013 0.002 0.008 0.001 0.006 0.002 0.003 0.004 0.007 0.001 0.001 0.252 0.008 0.121 0.484 21 Y 0.020 0.013 0.001 0.001 0.004 0.105 0.011 0.004 0.030 0.039 0.087 0.006 0.008 0.002 0.002 0.001 0.181 0.003 0.092 0.389 22 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.006 0.992 23 N 0.006 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.162 0.006 0.136 0.672 24 T 0.528 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.064 0.021 0.048 0.325 25 T 0.099 0.048 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.186 0.009 0.182 0.470 26 T 0.053 0.027 0.014 0.002 0.019 0.005 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.242 0.006 0.202 0.421 27 L 0.026 0.054 0.001 0.001 0.005 0.039 0.005 0.003 0.001 0.001 0.001 0.001 0.014 0.022 0.005 0.001 0.565 0.003 0.059 0.196 28 K 0.028 0.115 0.002 0.001 0.012 0.021 0.144 0.012 0.001 0.001 0.006 0.001 0.006 0.002 0.002 0.002 0.332 0.003 0.062 0.250 29 N 0.020 0.157 0.001 0.001 0.001 0.001 0.002 0.004 0.031 0.038 0.005 0.001 0.004 0.002 0.003 0.002 0.345 0.010 0.055 0.320 30 K 0.026 0.218 0.004 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.272 0.012 0.087 0.362 31 Y 0.029 0.149 0.005 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.002 0.001 0.003 0.002 0.126 0.016 0.265 0.394 32 G 0.268 0.102 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.055 0.086 0.420 33 I 0.173 0.168 0.060 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.099 0.012 0.072 0.398 34 K 0.029 0.105 0.009 0.005 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.069 0.012 0.136 0.627 35 N 0.065 0.064 0.018 0.001 0.005 0.010 0.003 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.013 0.009 0.132 0.673 36 L 0.038 0.076 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.052 0.010 0.078 0.742 37 N 0.007 0.058 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.023 0.438 0.471 38 A 0.032 0.051 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.769 0.133 39 F 0.011 0.956 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.029 40 L 0.006 0.937 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.006 0.045 41 E 0.027 0.903 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.059 42 K 0.080 0.827 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.035 0.002 0.054 43 C 0.110 0.774 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.032 0.003 0.072 44 S 0.073 0.519 0.079 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.031 0.020 0.268 45 H 0.059 0.200 0.043 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.021 0.028 0.634 46 D 0.155 0.190 0.013 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.038 0.055 0.538 47 T 0.077 0.255 0.015 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.017 0.159 0.467 48 A 0.013 0.358 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.008 0.117 0.473 49 K 0.006 0.416 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.010 0.177 0.370 50 A 0.018 0.567 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.007 0.190 0.207 51 M 0.008 0.947 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.003 0.002 0.034 52 I 0.005 0.959 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.002 0.001 0.022 53 N 0.013 0.933 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.011 0.001 0.031 54 L 0.046 0.863 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.021 0.002 0.050 55 R 0.042 0.822 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.015 0.006 0.080 56 E 0.058 0.659 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.020 0.009 0.208 57 E 0.122 0.497 0.032 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.045 0.020 0.244 58 S 0.160 0.129 0.051 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.039 0.035 0.550 59 L 0.052 0.063 0.085 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.006 0.067 0.671 60 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 61 E 0.021 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.004 0.106 0.836 62 Y 0.379 0.047 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.018 0.054 0.471 63 F 0.386 0.168 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.035 0.015 0.041 0.345 64 D 0.089 0.259 0.009 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.008 0.120 0.461 65 T 0.026 0.287 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.060 0.006 0.082 0.534 66 A 0.015 0.368 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.010 0.250 0.343 67 Y 0.032 0.437 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.009 0.328 0.187 68 L 0.014 0.925 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.005 0.049 69 C 0.007 0.940 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.004 0.041 70 H 0.007 0.920 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.063 71 I 0.011 0.937 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.039 72 H 0.010 0.955 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.025 73 Q 0.021 0.915 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.048 74 Q 0.065 0.841 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.001 0.060 75 L 0.079 0.804 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.001 0.071