# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i9sA 210 4.06e-01 1i9sA c.45.1.1 62099 2c46A 241 9.69e-01 1n6bA 473 1.27e+00 a.104.1.1 85359 1jr7A 311 1.97e+00 b.82.2.3 63255 1nr6A 473 2.95e+00 a.104.1.1 92085 1x3xA 82 3.74e+00 1w4vA 119 4.83e+00 1uvzA 119 4.90e+00 1z08A 170 5.10e+00 1lkxA 697 5.62e+00 c.37.1.9 73981 2sas 185 5.76e+00 2sas a.39.1.5 17258 1tx4B 178 6.12e+00 1ctqA c.37.1.8 32045 1kmqA 184 8.04e+00 c.37.1.8 84412 1efcA 393 1.13e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1mc2A 122 1.33e+01 a.133.1.2 74622 1fzqA 181 1.43e+01 1hurA c.37.1.8 32060 1db1A 259 1.54e+01 1db1A a.123.1.1 19329 1ypqA 135 1.59e+01 1s1eA 224 1.68e+01 1wv2A 265 1.69e+01 1dt6A 473 1.73e+01 1dt6A a.104.1.1 18977 1xw5A 217 1.78e+01 1t00A 112 1.82e+01 1y60A 169 1.84e+01 1gmwA 143 2.09e+01 b.107.1.1,d.58.38.1 65347,65348 1jpmA 366 2.12e+01 c.1.11.2,d.54.1.1 67031,67032 2c4jA 218 2.13e+01 1fuoA 467 2.17e+01 1furA a.127.1.1 19411 1gmuA 143 2.18e+01 b.107.1.1,d.58.38.1 65335,65336 1fuqA 472 2.19e+01 1furA a.127.1.1 19405 1furA 467 2.26e+01 1furA a.127.1.1 19403 1s6cA 183 2.30e+01 a.39.1.5 98594 1g8jB 133 2.68e+01 1g8jB b.33.1.1 24439 2g0qA 173 2.68e+01 1mnd 762 2.74e+01 1lvk b.34.3.1,c.37.1.9 24591,32188 1kebA 108 2.75e+01 c.47.1.1 77341 1v9mA 323 2.78e+01 f.40.1.1 100543 2trxA 108 2.82e+01 1thx c.47.1.1 32719 1knt 58 2.84e+01 1bpi g.8.1.1 44538 2ganA 190 2.85e+01 1f7zA 233 2.87e+01 5ptp b.47.1.2 59681 1kthA 58 2.94e+01 g.8.1.1 68863 2knt 58 2.94e+01 1bpi g.8.1.1 44537 1kvnA 104 3.16e+01 d.201.1.1 73066 1bvoA 175 3.33e+01 1a3qA b.2.5.3 22457 1gc5A 467 3.36e+01 1gc5A c.72.1.3 60429 1q7bA 244 3.39e+01 c.2.1.2 96026 2c5qA 240 3.40e+01 1yqfA 203 3.41e+01 2clbA 188 3.42e+01 1x8hA 228 3.50e+01 1ltdA 506 3.68e+01 1gox c.1.4.1,d.120.1.1 28618,41086 1ie9A 259 3.82e+01 1db1A a.123.1.1 62318 1etu 394 3.90e+01 1efcA c.37.1.8 64737 1vfgA 390 3.91e+01 a.173.1.1,d.218.1.4 108570,108571 1ovnA 248 3.93e+01 a.71.1.1,c.47.1.7 93602,93603 1wz7A 111 4.10e+01 1d3gA 367 4.12e+01 1d3gA c.1.4.1 28600 1d3hA 367 4.15e+01 1d3gA c.1.4.1 28601 1qbgA 272 4.21e+01 1d4aA c.23.5.3 31227 1q4uA 151 4.22e+01 d.38.1.5 95828 1vj0A 380 4.23e+01 b.35.1.2,c.2.1.1 100786,100787 1aqcA 172 4.27e+01 1x11A b.55.1.2 26983 2b0mA 393 4.28e+01 1kbqA 273 4.31e+01 c.23.5.3 68391 1d4aA 273 4.31e+01 1d4aA c.23.5.3 31219 1sqhA 312 4.36e+01 d.108.1.5 98966 1yz7A 188 4.45e+01 1g8kB 133 4.57e+01 1g8jB b.33.1.1 24435 1edoA 244 4.64e+01 1ybvA c.2.1.2 29896 1uumA 372 4.77e+01 c.1.4.1 100010 1qlaB 239 4.95e+01 1qlaB a.1.2.1,d.15.4.2 15679,37707 1mszA 86 4.95e+01 d.68.7.1 79428 1je5A 206 4.95e+01 1je5A b.40.4.7 62909 1ponB 36 4.97e+01 1ponB 1r5zA 323 5.07e+01 f.40.1.1 97135 1y4lA 121 5.07e+01 1w9gA 104 5.16e+01 1v7oA 165 5.21e+01 d.67.1.2 100480 1ie5A 107 5.35e+01 b.1.1.4 62312 3pviA 157 5.38e+01 3pviA c.52.1.6 33300 2hekA 371 5.40e+01 1dwkA 156 5.47e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1efuA 385 5.47e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 1eyuA 157 5.64e+01 3pviA c.52.1.6 33304 2pviA 157 5.72e+01 3pviA c.52.1.6 33302 1xxsA 122 5.77e+01 1ow4A 129 5.79e+01 a.39.2.1 93628 1h6zA 913 5.81e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1ky3A 182 5.82e+01 c.37.1.8 73193 1ucpA 91 5.84e+01 a.77.1.5 99186 1exmA 405 5.86e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2c78A 405 5.87e+01 1tkkA 366 5.88e+01 c.1.11.2,d.54.1.1 107089,107090 1v4pA 157 5.98e+01 1ha3A 405 5.98e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1x8gA 227 6.00e+01 1lvk 762 6.40e+01 1lvk b.34.3.1,c.37.1.9 24576,32173 1zkiA 133 6.46e+01 1t50A 58 6.52e+01 g.63.1.1 99124 1rsgA 516 6.71e+01 1i4nA 251 6.73e+01 c.1.2.4 71114 1nffA 260 6.79e+01 c.2.1.2 80457 1oqyA 368 7.11e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1lj0A 92 7.18e+01 d.120.1.1 78019 1dw9A 156 7.27e+01 1dw9A a.35.1.4,d.72.1.1 17065,39596 1i7hA 111 7.36e+01 d.15.4.1 71122 1zzgA 415 7.61e+01 1cwxA 44 7.68e+01 1cwxA j.54.1.1 46338 1a4uA 254 7.87e+01 1b16A c.2.1.2 29878 1xg7A 250 7.88e+01 1jvr 137 8.17e+01 1jvr a.61.1.2 18132 4aahA 571 8.17e+01 4aahA b.70.1.1 27678 1sbyA 254 8.25e+01 1eljA 381 8.35e+01 4mbp c.94.1.1 35791 1aipE 405 8.41e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25699,25739,32134 1b16A 254 8.45e+01 1b16A c.2.1.2 29875 1k2eA 156 8.47e+01 d.113.1.1 72010 1jrkA 156 8.55e+01 d.113.1.1 71827 1bdc 60 8.57e+01 1fc2C a.8.1.1 16350 1aipA 405 8.78e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1fcbA 511 8.82e+01 1gox c.1.4.1,d.120.1.1 28620,41087 1j0fA 100 8.84e+01 c.47.1.14 90739 1k26A 156 8.94e+01 d.113.1.1 72003 2gk9A 426 9.00e+01