# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2d0sA 79 1.01e+00 1e0eA 55 4.38e+00 1wjcA a.4.10.1 59147 1t3yA 141 5.43e+00 2a1xA 308 6.62e+00 1zin 217 7.61e+00 1zin c.37.1.1,g.41.2.1 31915,45178 1ypqA 135 7.92e+00 1zbsA 291 8.89e+00 1r6xA 395 9.34e+00 b.122.1.3,c.26.1.5 97167,97168 1s6cA 183 1.01e+01 a.39.1.5 98594 1o5zA 442 1.21e+01 c.59.1.2,c.72.2.2 92530,92531 1tz0A 114 1.29e+01 d.58.4.5 107463 1t0qC 86 1.48e+01 d.15.12.1 106222 1ofcX 304 1.51e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1g12A 167 1.55e+01 1ge5A d.92.1.12 60193 1d5rA 324 1.60e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1d3gA 367 1.61e+01 1d3gA c.1.4.1 28600 1igqA 62 1.62e+01 b.34.1.3 66130 1r29A 127 1.63e+01 d.42.1.1 96856 1ojhA 65 1.66e+01 a.214.1.1 103976 1eexA 554 2.03e+01 1dioA c.1.19.3 29650 1njrA 284 2.09e+01 c.50.1.2 103858 2cohA 202 2.10e+01 1sumB 235 2.32e+01 a.7.12.1 106025 1x52A 124 2.33e+01 1whsA 255 2.37e+01 1ivyA c.69.1.5 34649 1pa2A 306 2.38e+01 1bgp a.93.1.1 18693 2fueA 262 2.51e+01 1yvcA 70 2.56e+01 2ftzA 284 2.61e+01 1rwzA 245 2.77e+01 d.131.1.2,d.131.1.2 98005,98006 1hx1B 114 2.79e+01 1hx1B a.7.7.1 61350 1qwgA 251 2.88e+01 c.1.27.1 96473 1a9xA 1058 3.09e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1vp7A 100 3.15e+01 1o63A 219 3.23e+01 c.94.1.1 92540 1cs0A 1073 3.28e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2eu8A 216 3.30e+01 2h88C 140 3.36e+01 1w0uA 55 3.39e+01 1r2zA 274 3.50e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1q1aA 289 3.56e+01 c.31.1.5 95561 1r6fA 310 3.60e+01 e.46.1.1 97149 1e9rA 437 3.75e+01 c.37.1.11 64827 2ae2A 260 3.76e+01 1bdb c.2.1.2 29945 1r0pA 312 3.78e+01 d.144.1.7 96734 1jfrA 262 3.80e+01 1jfrA c.69.1.16 34724 2g8lA 299 3.86e+01 1qsgA 265 3.87e+01 1eny c.2.1.2 29935 1hl9A 449 3.92e+01 b.71.1.3,c.1.8.11 90650,90651 1yrkA 126 3.93e+01 1ifqA 138 4.19e+01 1ifqA d.110.4.1 62350 1ywwA 85 4.22e+01 1z67A 135 4.47e+01 1fwoA 35 4.48e+01 1fwoA g.3.16.1 60062 1ym3A 215 4.64e+01 2ak3A 226 4.78e+01 1zin c.37.1.1,g.41.2.1 31892,45193 2czsA 80 4.80e+01 1eueA 86 4.96e+01 1cyo d.120.1.1 59504 1x3xA 82 4.96e+01 1gox 370 5.03e+01 1gox c.1.4.1 28607 2bcqA 335 5.14e+01 1sfkA 76 5.17e+01 a.190.1.1 105488 1g73C 121 5.29e+01 1g3fA g.52.1.1 45375 2db1A 118 5.47e+01 1jvr 137 5.49e+01 1jvr a.61.1.2 18132 2a7kA 250 5.66e+01 2b69A 343 5.89e+01 1iieA 75 6.03e+01 1iieA a.109.1.1 19039 1k82A 268 6.04e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 2fbiA 142 6.05e+01 1orvA 728 6.25e+01 b.70.3.1,c.69.1.24 87354,87355 1xszA 356 6.27e+01 1v7pC 200 6.32e+01 c.62.1.1 108408 1oj5A 132 6.32e+01 d.110.3.8 93087 1kv0A 66 6.40e+01 g.3.7.1 91040 2herA 368 6.42e+01 1uwmA 106 6.53e+01 1t1vA 93 6.56e+01 c.47.1.14 106278 1reqA 727 6.69e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1zuoA 186 6.84e+01 1ysrA 150 7.02e+01 1i3zA 103 7.19e+01 d.93.1.1 83667 2atzA 180 7.20e+01 1rss 151 7.32e+01 1rss a.75.1.1 18392 1oyjA 231 7.62e+01 a.45.1.1,c.47.1.5 87597,87598 2d9bA 109 7.74e+01 1t3iA 420 7.77e+01 c.67.1.3 106354 2c31A 568 7.77e+01 1yt5A 258 7.98e+01 1neq 74 8.04e+01 1neq a.35.1.2 17063 2agkA 260 8.06e+01 2fbwC 141 8.10e+01 1gwuA 309 8.13e+01 a.93.1.1 83351 1nxhA 126 8.15e+01 a.200.1.1 92300 1mqkL 120 8.20e+01 b.1.1.1 85054 2coeA 120 8.34e+01 1zowA 313 8.38e+01 1x75A 132 8.42e+01 1x42A 232 8.42e+01 1bbzA 58 8.59e+01 1bbzA b.34.2.1 24477