# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yvcA 70 3.49e-01 2d0sA 79 1.16e+00 1dmhA 311 3.11e+00 1dmhA b.3.6.1 22633 2czsA 80 3.38e+00 1e0eA 55 4.49e+00 1wjcA a.4.10.1 59147 1ppjE 196 4.69e+00 b.33.1.1,f.23.12.1 104260,104261 1gk9A 260 5.55e+00 d.153.1.2 65246 2h88C 140 6.10e+00 1zbsA 291 7.69e+00 2a1xA 308 1.08e+01 1e8rA 50 1.11e+01 1e8rA g.29.1.1 44960 1s6cA 183 1.15e+01 a.39.1.5 98594 1qh8B 519 1.22e+01 1qguB c.92.2.3 35634 1x58A 62 1.24e+01 2pspA 106 1.37e+01 2pspA g.16.1.1,g.16.1.1 44730,44731 2fbwC 141 1.55e+01 2g0qA 173 1.58e+01 1mijA 152 1.74e+01 a.4.1.1 79150 1tzyA 129 1.76e+01 a.22.1.1 107530 1gl4A 285 1.80e+01 d.22.1.2,g.3.11.5 65286,65287 1x4rA 99 2.20e+01 1rwzA 245 2.41e+01 d.131.1.2,d.131.1.2 98005,98006 1oohA 126 2.41e+01 a.39.2.1 93383 1ojhA 65 2.57e+01 a.214.1.1 103976 1wmiB 67 2.90e+01 1zin 217 2.94e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1vj2A 126 3.02e+01 b.82.1.10 100796 1r8oA 96 3.21e+01 b.42.4.1 104852 1g12A 167 3.29e+01 1ge5A d.92.1.12 60193 1t3yA 141 3.43e+01 1m4vA 204 3.45e+01 b.40.2.2,d.15.6.1 74459,74460 1x3xA 82 3.49e+01 1r6xA 395 3.53e+01 b.122.1.3,c.26.1.5 97167,97168 2ftzA 284 3.53e+01 1ypqA 135 3.60e+01 1tz0A 114 3.70e+01 d.58.4.5 107463 1xr4A 509 4.05e+01 1vgyA 393 4.06e+01 c.56.5.4,d.58.19.1 100620,100621 2herA 368 4.12e+01 1l8dA 112 4.13e+01 h.4.12.1 73687 1j6rA 214 4.18e+01 d.173.1.2 71598 1ysrA 150 4.24e+01 1or7A 194 4.31e+01 a.4.13.2,a.177.1.1 87332,87333 1ifqA 138 4.53e+01 1ifqA d.110.4.1 62350 1orvA 728 4.59e+01 b.70.3.1,c.69.1.24 87354,87355 1qwlA 505 4.81e+01 e.5.1.1 96483 2h3lA 103 5.24e+01 2bi7A 384 5.49e+01 2coeA 120 5.52e+01 2b8nA 429 5.72e+01 1g4yB 101 5.73e+01 1g4yB f.15.1.1 60251 1w0uA 55 5.77e+01 1gox 370 5.81e+01 1gox c.1.4.1 28607 1ow4A 129 5.94e+01 a.39.2.1 93628 1jkoC 52 5.97e+01 a.4.1.2 66809 1psm 38 6.10e+01 1psm j.18.1.1 46170 1igqA 62 6.36e+01 b.34.1.3 66130 1uwmA 106 6.40e+01 1eueA 86 6.40e+01 1cyo d.120.1.1 59504 1r6fA 310 6.49e+01 e.46.1.1 97149 1kn7A 78 6.57e+01 j.12.1.1 84413 1yz4A 160 6.84e+01 2fl4A 149 6.90e+01 1iooA 196 6.95e+01 d.124.1.1 71250 1x8dA 104 6.99e+01 2ak3A 226 7.72e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1s8nA 205 7.75e+01 c.23.1.1 105374 1d3gA 367 7.83e+01 1d3gA c.1.4.1 28600 1whsA 255 8.02e+01 1ivyA c.69.1.5 34649 2ch8A 201 8.19e+01 1mr1C 99 8.80e+01 d.217.1.2 79420 1flcB 175 8.89e+01 1flcB h.3.1.1 45716 1n62B 809 8.95e+01 d.41.1.1,d.133.1.1 80092,80093 1p4cA 380 8.97e+01 c.1.4.1 94100