# List of top-scoring protein chains for t04-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iyxA 432 4.37e-02 c.1.11.1,d.54.1.1 83815,83816 1w6tA 444 1.41e-01 1gowA 489 1.88e-01 1qvbA c.1.8.4 28981 1nnfA 309 3.68e-01 c.94.1.1 85903 1o7tA 309 7.15e-01 c.94.1.1 86645 1xc1A 309 1.71e+00 c.94.1.1 109543 2fymA 431 1.87e+00 1hqsA 423 2.02e+00 1iso c.77.1.1 61154 1jmuB 666 2.68e+00 1fnuA 221 3.62e+00 3seb b.40.2.2,d.15.6.1 25212,37801 2a67A 167 3.72e+00 1ox0A 430 3.75e+00 c.95.1.1,c.95.1.1 87495,87496 2gk9A 426 3.83e+00 1j79A 347 3.84e+00 1j79A c.1.9.4 62675 2fpqA 444 4.21e+00 1k2xB 143 4.63e+00 1hkkA 364 4.84e+00 c.1.8.5,d.26.3.1 90634,90635 1wdcB 156 5.81e+00 1wdcB a.39.1.5 17302 2auaA 224 6.15e+00 1jftA 340 6.31e+00 a.35.1.5,c.93.1.1 66652,66653 1l1qA 186 6.52e+00 c.61.1.1 77653 1ypyA 184 7.12e+00 1vb3A 428 7.21e+00 1zbsA 291 7.66e+00 1h1nA 305 8.69e+00 c.1.8.3 70855 1tf4A 605 8.84e+00 1tf4A a.102.1.2,b.2.2.2 18827,22393 1ow4A 129 8.92e+00 a.39.2.1 93628 1c0pA 363 9.28e+00 1an9A c.4.1.2,d.16.1.3 30647,37934 1fo1A 271 9.91e+00 1fo1A c.10.2.3,d.58.7.2 30869,39213 2vsgA 358 1.00e+01 2vsgA h.4.1.1 45780 1wb0A 445 1.14e+01 1gycA 499 1.16e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2bhuA 602 1.21e+01 1mxgA 435 1.22e+01 b.71.1.1,c.1.8.1 85193,85194 1d8wA 426 1.23e+01 1de5A c.1.15.2 29394 1w1oA 534 1.27e+01 d.58.32.4,d.145.1.1 109071,109072 1sat 471 1.27e+01 1sat b.80.7.1,d.92.1.6 28014,40300 2ceyA 306 1.32e+01 1vlyA 338 1.34e+01 b.44.2.1,d.250.1.1 108871,108872 1x84A 189 1.42e+01 1yozA 116 1.42e+01 2f6kA 307 1.49e+01 1ffyA 917 1.53e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2avnA 260 1.54e+01 1hjxA 362 1.65e+01 c.1.8.5,d.26.3.1 83512,83513 1j6wA 175 1.69e+01 1j98A d.185.1.2 62663 1pbtA 244 1.71e+01 c.124.1.1 94416 1xpxA 163 1.71e+01 1uumA 372 1.73e+01 c.1.4.1 100010 1w7jA 795 1.75e+01 2a5vA 213 1.78e+01 1mqeA 207 1.78e+01 d.113.1.1 91394 1tn4 159 1.86e+01 1ncx a.39.1.5 17248 1z9tA 255 1.90e+01 1mrg 263 1.92e+01 1mrj d.165.1.1 42183 1bvoA 175 1.94e+01 1a3qA b.2.5.3 22457 1sq5A 308 1.96e+01 c.37.1.6 105882 1igwA 434 1.96e+01 c.1.12.7 62370 1jchA 551 1.98e+01 b.101.1.1,b.110.1.1,h.4.9.1 66491,66492,66493 1ym3A 215 2.00e+01 2av4A 162 2.08e+01 2apxA 112 2.09e+01 1b65A 375 2.12e+01 1b65A d.154.1.1 42020 1b0uA 262 2.17e+01 1b0uA c.37.1.12 32370 1pv1A 299 2.26e+01 1nksA 194 2.28e+01 1nksA c.37.1.1 31886 1d2tA 231 2.29e+01 1d2tA a.111.1.1 19052 1c1lA 136 2.37e+01 1c1lA b.29.1.3 24219 1qe3A 489 2.49e+01 2bce c.69.1.1 34630 1jilA 420 2.49e+01 c.26.1.1 66745 1dar 691 2.53e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1 25707,32142,37547,39300 1vs0A 310 2.59e+01 3xis 387 2.59e+01 4xis c.1.15.3 29423 4xis 387 2.60e+01 4xis c.1.15.3 29421 1jdw 423 2.61e+01 1jdw d.126.1.2 41129 1apyB 141 2.62e+01 1apyB 1oe9A 795 2.66e+01 b.34.3.1,c.37.1.9 92792,92793 2fbwB 252 2.74e+01 2btfA 375 2.75e+01 1yagA c.55.1.1,c.55.1.1 33429,33430 1ido 192 2.81e+01 1ido c.62.1.1 34139 1quuA 250 2.82e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1k1aA 241 2.85e+01 d.211.1.1 67992 1g8aA 227 2.87e+01 c.66.1.3 90506 1pgtA 210 2.91e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1gr0A 367 2.95e+01 c.2.1.3,d.81.1.3 70379,70380 1exrA 148 2.97e+01 1cll a.39.1.5 17299 1nbwA 607 3.04e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1rypK 198 3.10e+01 d.153.1.4 41879 1vemA 516 3.17e+01 2fi1A 190 3.20e+01 1hj9A 226 3.21e+01 b.47.1.2 65845 1i19A 561 3.35e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1gmuA 143 3.46e+01 b.107.1.1,d.58.38.1 65335,65336 1rlr 761 3.47e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 1ie9A 259 3.50e+01 1db1A a.123.1.1 62318 1ea7A 310 3.53e+01 c.41.1.1 70086 2ab5A 269 3.56e+01 1uohA 226 3.56e+01 d.211.1.1 99690 2d0oA 610 3.57e+01 1pd21 199 3.57e+01 1pd21 1qfhA 212 3.59e+01 1qfhA b.1.18.10,b.1.18.10 21893,21894 1l6sA 323 3.61e+01 c.1.10.3 73627 1gppA 237 3.82e+01 b.86.1.2 76262 1lrzA 426 3.86e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1pe9A 361 3.86e+01 b.80.1.1 94595 1wmbA 260 3.95e+01 1ve5A 311 3.96e+01 1lycA 343 4.00e+01 a.93.1.1 74344 1du3A 130 4.01e+01 1d4vA g.24.1.1,g.24.1.1,g.24.1.1 44927,44928,44929 1d4aA 273 4.03e+01 1d4aA c.23.5.3 31219 1hyoA 421 4.07e+01 1qcnA b.34.8.1,d.177.1.1 59001,59002 1bdfA 235 4.08e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1ogdA 131 4.08e+01 c.133.1.1 92893 1wdpA 495 4.10e+01 1tqnA 486 4.10e+01 a.104.1.1 107238 1aru 344 4.19e+01 1arv a.93.1.1 18589 1hl9A 449 4.20e+01 b.71.1.3,c.1.8.11 90650,90651 1djxB 624 4.20e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 1ia8A 289 4.24e+01 1ia8A d.144.1.7 62112 1t3bA 211 4.26e+01 c.47.1.9,d.17.3.1 106341,106342 1lf6A 684 4.27e+01 a.102.1.5,b.30.5.5 77918,77919 1g9mG 321 4.29e+01 1gc1G d.172.1.1 42492 1qnaA 200 4.31e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 1gtkA 313 4.33e+01 c.94.1.1,d.50.2.1 76346,76347 1vkhA 273 4.36e+01 c.69.1.32 108662 1nbwB 117 4.39e+01 c.51.3.2 80396 1g99A 408 4.39e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 1eulA 994 4.42e+01 1eulA 1zgdA 312 4.45e+01 2azqA 311 4.46e+01 1rxwA 336 4.50e+01 a.60.7.1,c.120.1.2 98059,98060 2furA 209 4.62e+01 1d0yA 761 4.65e+01 1lvk b.34.3.1,c.37.1.9 24581,32178 2sak 121 4.72e+01 2sak d.15.5.1 37711 1zk7A 467 4.72e+01 1dzlA 505 4.78e+01 1dzlA b.121.6.1 23586 1hc7A 477 4.80e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1noyA 388 4.82e+01 1clqA c.55.3.5 33713 1arb 268 4.86e+01 1arb b.47.1.1 25766 1sqjA 789 4.90e+01 b.69.13.1,b.69.13.1 105918,105919 2b8mA 117 4.93e+01 1kqfB 294 4.94e+01 d.58.1.5,f.23.22.1 75900,75901 1lam 484 4.97e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1p30A 952 5.08e+01 b.121.2.2,b.121.2.2 93964,93965 1yydA 357 5.09e+01 2b99A 156 5.10e+01 1ysrA 150 5.12e+01 1w3jA 468 5.15e+01 c.1.8.4 109156 1tluA 130 5.21e+01 d.156.1.2 107139 1jc4A 148 5.22e+01 1jc4A d.32.1.4 62863 1a0rP 245 5.26e+01 1b9yC c.47.1.6 33054 1fgxA 288 5.31e+01 1fgxA c.68.1.2 34508 1v9mA 323 5.32e+01 f.40.1.1 100543 1nq7A 244 5.34e+01 a.123.1.1 92047 1sumB 235 5.40e+01 a.7.12.1 106025 1d2nA 272 5.45e+01 1d2nA c.37.1.20 32428 1mijA 152 5.50e+01 a.4.1.1 79150 1aboA 62 5.51e+01 1bbzA b.34.2.1 24474 1y13A 181 5.55e+01 1e4mM 501 5.59e+01 1e70M c.1.8.4 59226 2ganA 190 5.66e+01 1ylmA 144 5.67e+01 1oyeA 1049 5.68e+01 d.58.44.1,d.58.44.1,d.58.44.1,d.58.44.1,d.225.1.1,d.225.1.1,f.35.1.1,f.35.1.1 87587,87588,87589,87590,87591,87592,87593,87594 3rp2A 224 5.71e+01 1a7s b.47.1.2 26298 1hzdA 272 5.75e+01 c.14.1.3 65969 1cm5A 759 5.92e+01 1cm5A c.7.1.1 30671 1qhoA 686 5.94e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1musA 477 5.95e+01 c.55.3.4 79494 1obr 326 6.01e+01 1aye c.56.5.2 33828 2eu9A 355 6.08e+01 1q8rA 120 6.13e+01 d.79.6.1 96225 1f8eA 388 6.15e+01 2qwc b.68.1.1 59694 1a8e 329 6.18e+01 1cb6A c.94.1.2 35888 1sc6A 404 6.20e+01 1xcrA 316 6.31e+01 1aoeA 192 6.33e+01 1aoeA c.71.1.1 34923 1itcA 516 6.35e+01 b.3.1.1,c.1.8.1 83705,83706 1cjaA 342 6.35e+01 1cjaA d.144.1.3 41708 1zc6A 305 6.38e+01 1rg9A 383 6.38e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1y0zA 330 6.39e+01 1q4uA 151 6.44e+01 d.38.1.5 95828 1i9sA 210 6.45e+01 1i9sA c.45.1.1 62099 2f3yA 148 6.46e+01 1j2zA 270 6.48e+01 b.81.1.1 90805 2g8mA 264 6.48e+01 1y07A 128 6.51e+01 1d4xG 126 6.51e+01 1d0nA d.109.1.1 59109 1bu8A 452 6.54e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1ku0A 388 6.58e+01 c.69.1.18 72994 2gakA 391 6.62e+01 1y8aA 332 6.62e+01 1ig8A 486 6.64e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1cvrA 435 6.65e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1d3gA 367 6.72e+01 1d3gA c.1.4.1 28600 1gefA 123 6.80e+01 1gefA c.52.1.18 60465 1p32A 209 6.93e+01 1p32A d.25.1.1 38379 2gnpA 266 6.95e+01 1u04A 771 6.97e+01 b.34.14.1,c.55.3.10 107539,107540 1nn6A 228 6.98e+01 b.47.1.2 85893 1llp 343 7.07e+01 1arv a.93.1.1 18578 1riqA 465 7.08e+01 a.203.1.1,d.104.1.1 97516,97517 1fl0A 171 7.09e+01 1eujA b.40.4.4 25315 1nf2A 268 7.17e+01 c.108.1.10 91849 1f0nA 285 7.19e+01 1dqyA c.69.1.3 34636 1nu5A 370 7.21e+01 c.1.11.2,d.54.1.1 92183,92184 1xrtA 467 7.21e+01 1xfdA 723 7.25e+01 1kwgA 645 7.34e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1ni4A 365 7.40e+01 c.36.1.11 85728 1on3A 523 7.41e+01 c.14.1.4,c.14.1.4 87107,87108 1qf5A 431 7.42e+01 1adeA c.37.1.10 32212 1ydnA 295 7.42e+01 1gox 370 7.53e+01 1gox c.1.4.1 28607 2atzA 180 7.58e+01 1ve3A 227 7.58e+01 1e8uA 454 7.62e+01 1e8tA b.68.1.1 59389 1aqzA 149 7.69e+01 1aqzA d.1.1.3 36238 1xkpC 143 7.74e+01 1z3iX 644 7.79e+01 1vfgA 390 7.93e+01 a.173.1.1,d.218.1.4 108570,108571 1wlsA 328 8.03e+01 1gnd 447 8.04e+01 1gnd c.3.1.3,d.16.1.6 30423,37987 2b0mA 393 8.06e+01 1ad2 228 8.20e+01 1ad2 e.24.1.1 43353 2bwvA 440 8.21e+01 1j09A 468 8.21e+01 a.97.1.1,c.26.1.1 77025,77026 1gj7B 253 8.24e+01 1cmcA 104 8.28e+01 1cmbA a.43.1.5 17462 2cduA 452 8.31e+01 1y8qB 640 8.35e+01 1zr5A 214 8.42e+01 1an9A 340 8.49e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1nthA 458 8.65e+01 c.1.25.1 80730 2a77H 222 8.66e+01 1q8yA 373 8.76e+01 d.144.1.7 96234 1rv9A 259 8.76e+01 d.194.1.2 105105 1rvkA 382 8.79e+01 c.1.11.2,d.54.1.1 97928,97929 1kssA 571 8.81e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 2bklA 695 8.88e+01 1z90A 469 8.90e+01 1ajsA 412 8.95e+01 1ajsA c.67.1.1 34276 1qs0B 338 8.96e+01 1qs0B c.36.1.7,c.48.1.2 31830,33103 1zd7A 159 8.98e+01