# List of top-scoring protein chains for t04-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2c46A 241 8.29e-01 1i9sA 210 9.38e-01 1i9sA c.45.1.1 62099 1ysrA 150 1.07e+00 1r6xA 395 1.13e+00 b.122.1.3,c.26.1.5 97167,97168 1s1eA 224 1.56e+00 2a5vA 213 1.58e+00 1g8fA 511 1.84e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1s6cA 183 1.96e+00 a.39.1.5 98594 2cohA 202 2.25e+00 1ym3A 215 2.35e+00 1dmhA 311 2.39e+00 1dmhA b.3.6.1 22633 1ifqA 138 3.56e+00 1ifqA d.110.4.1 62350 2d0sA 79 4.01e+00 1zejA 293 4.32e+00 1ylmA 144 5.31e+00 1zbsA 291 5.53e+00 1uf2A 1019 6.79e+00 e.28.1.2 99289 2azqA 311 6.93e+00 2a1xA 308 6.95e+00 1d3gA 367 7.38e+00 1d3gA c.1.4.1 28600 1i7hA 111 7.55e+00 d.15.4.1 71122 2a7kA 250 7.83e+00 1elvA 333 8.51e+00 5ptp b.47.1.2,g.18.1.1 59454,59455 1vr5A 547 9.87e+00 1kqfC 217 1.10e+01 f.21.1.1 72874 1jlwA 219 1.17e+01 a.45.1.1,c.47.1.5 71741,71742 1uok 558 1.19e+01 1uok b.71.1.1,c.1.8.1 27801,28788 2clbA 188 1.26e+01 1sfkA 76 1.28e+01 a.190.1.1 105488 1gr0A 367 1.38e+01 c.2.1.3,d.81.1.3 70379,70380 1qbgA 272 1.39e+01 1d4aA c.23.5.3 31227 2g0qA 173 1.43e+01 1eueA 86 1.48e+01 1cyo d.120.1.1 59504 1r9kA 172 1.48e+01 a.168.1.1 104869 1sumB 235 1.54e+01 a.7.12.1 106025 2herA 368 1.59e+01 1ofcX 304 1.64e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1amuA 563 1.79e+01 1amuA e.23.1.1 43351 2cq7A 49 2.01e+01 2d2yA 145 2.02e+01 1m2dA 110 2.09e+01 c.47.1.11 78476 1djtA 64 2.13e+01 1aho g.3.7.1 44132 1e0eA 55 2.16e+01 1wjcA a.4.10.1 59147 1kv0A 66 2.17e+01 g.3.7.1 91040 1zxoA 291 2.39e+01 1s8nA 205 2.41e+01 c.23.1.1 105374 1zd7A 159 2.42e+01 1d4aA 273 2.45e+01 1d4aA c.23.5.3 31219 1ojrA 274 2.62e+01 c.74.1.1 93147 1oohA 126 2.66e+01 a.39.2.1 93383 2drwA 363 2.73e+01 2d83A 363 2.73e+01 1eexA 554 2.74e+01 1dioA c.1.19.3 29650 1gzsB 165 2.78e+01 a.168.1.1 76425 2f4mB 61 2.79e+01 1irdA 141 2.97e+01 a.1.1.2 66286 1t1vA 93 3.01e+01 c.47.1.14 106278 1e55A 512 3.03e+01 1e70M c.1.8.4 28934 1bxvA 91 3.09e+01 1aac b.6.1.1 22875 1s5lA 344 3.17e+01 1gvdA 52 3.20e+01 a.4.1.3 83338 1ow4A 129 3.21e+01 a.39.2.1 93628 1t0qC 86 3.22e+01 d.15.12.1 106222 1sqhA 312 3.26e+01 d.108.1.5 98966 1zm7A 230 3.29e+01 1n00A 321 3.34e+01 a.65.1.1 85241 1cmcA 104 3.39e+01 1cmbA a.43.1.5 17462 1h49A 512 3.41e+01 c.1.8.4 83477 1cmbA 104 3.49e+01 1cmbA a.43.1.5 17460 1xn8A 131 3.49e+01 1x3xA 82 3.51e+01 1gmlA 178 3.54e+01 c.8.5.2 70273 1vp7A 100 3.58e+01 7taa 478 3.62e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1j0fA 100 3.73e+01 c.47.1.14 90739 1pveA 72 3.75e+01 a.189.1.1 104322 2b0mA 393 3.76e+01 1ojhA 65 3.77e+01 a.214.1.1 103976 1r29A 127 3.80e+01 d.42.1.1 96856 1jsuC 84 3.84e+01 1jsuC j.55.1.1 46339 2h79A 269 3.88e+01 1ztsA 139 3.93e+01 1zkiA 133 4.00e+01 1hx1B 114 4.00e+01 1hx1B a.7.7.1 61350 1nmoA 247 4.14e+01 c.135.1.1 91980 1plc 99 4.19e+01 1plc b.6.1.1 22846 1jvr 137 4.30e+01 1jvr a.61.1.2 18132 1tp4A 97 4.32e+01 a.189.1.1 107183 1pinA 163 4.55e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 2fha 183 4.66e+01 2fha a.25.1.1 16674 1g99A 408 4.69e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 1ofzA 312 4.76e+01 b.68.8.1 86978 1whsA 255 4.93e+01 1ivyA c.69.1.5 34649 1w0uA 55 4.97e+01 1uwmA 106 5.13e+01 1bdb 277 5.15e+01 1bdb c.2.1.2 29874 1x8gA 227 5.19e+01 1oe0A 230 5.19e+01 c.37.1.1 92788 1zcjA 463 5.19e+01 1j7yA 141 5.24e+01 a.1.1.2 66426 1whtA 256 5.25e+01 1ivyA c.69.1.5 34646 1xg1A 67 5.26e+01 1u5uA 374 5.38e+01 1e9mA 106 5.42e+01 1ayfA d.15.4.1 59397 1o63A 219 5.54e+01 c.94.1.1 92540 2dkaA 544 5.57e+01 1rwzA 245 5.59e+01 d.131.1.2,d.131.1.2 98005,98006 1q4uA 151 5.61e+01 d.38.1.5 95828 1xmpA 170 5.66e+01 1l5oA 356 5.67e+01 c.39.1.1 77711 1p1mA 406 5.71e+01 b.92.1.4,c.1.9.9 87696,87697 1q35A 320 5.85e+01 c.94.1.1 95661 2d9bA 109 5.98e+01 2b25A 336 6.01e+01 1f37A 110 6.11e+01 1f37A c.47.1.11 33088 1dbqA 289 6.31e+01 1qpzA c.93.1.1 35666 1hm6A 346 6.37e+01 1avc a.65.1.1 18147 2gk9A 426 6.40e+01 2d0oA 610 6.57e+01 1zz1A 369 6.62e+01 1qsgA 265 6.64e+01 1eny c.2.1.2 29935 2ac4A 309 6.68e+01 1d0vA 356 6.79e+01 1d0vA c.39.1.1 32476 1e3aA 260 6.80e+01 1ajqA d.153.1.2 41838 2pspA 106 6.90e+01 2pspA g.16.1.1,g.16.1.1 44730,44731 1g12A 167 7.24e+01 1ge5A d.92.1.12 60193 1dik 874 7.32e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1zp4A 304 7.34e+01 1i3zA 103 7.37e+01 d.93.1.1 83667 1hyp 80 7.40e+01 1hyp a.52.1.1 17806 1gw5S 142 7.57e+01 d.110.4.2 70633 1bqbA 301 7.61e+01 1hyt d.92.1.2 58962 1dd9A 338 7.78e+01 1dd9A e.13.1.1 43254 1gox 370 7.78e+01 1gox c.1.4.1 28607 1qw9A 502 7.81e+01 b.71.1.2,c.1.8.3 96466,96467 1gk9A 260 7.83e+01 d.153.1.2 65246 1o57A 291 7.89e+01 a.4.5.40,c.61.1.1 92483,92484 1sv6A 269 7.90e+01 d.177.1.1 106043 2g8lA 299 7.95e+01 2knt 58 8.14e+01 1bpi g.8.1.1 44537 1j6pA 418 8.25e+01 b.92.1.4,c.1.9.9 77089,77090 1j6wA 175 8.38e+01 1j98A d.185.1.2 62663 1ypqA 135 8.39e+01 1oxxK 353 8.55e+01 b.40.6.3,c.37.1.12 93715,93716 1tp6A 128 8.55e+01 d.17.4.12 107184 1hcrA 52 8.57e+01 1hcrA a.4.1.2 16020 2f1rA 171 8.58e+01 2f9dA 125 8.63e+01 1ykiA 217 8.70e+01 2fueA 262 8.81e+01 1babA 143 8.93e+01 1abwA a.1.1.2 15235