# List of top-scoring protein chains for t04-100-30-alpha-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i9sA 210 3.93e-01 1i9sA c.45.1.1 62099 2c46A 241 4.90e-01 1ysrA 150 5.51e-01 1zbsA 291 1.26e+00 2d0sA 79 1.29e+00 2a5vA 213 1.76e+00 1r6xA 395 1.77e+00 b.122.1.3,c.26.1.5 97167,97168 1ym3A 215 2.10e+00 1s6cA 183 2.46e+00 a.39.1.5 98594 1s1eA 224 2.55e+00 1sumB 235 2.57e+00 a.7.12.1 106025 1g8fA 511 3.23e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2cohA 202 3.78e+00 1ylmA 144 6.26e+00 1ow4A 129 6.40e+00 a.39.2.1 93628 2d2yA 145 6.70e+00 1ifqA 138 6.87e+00 1ifqA d.110.4.1 62350 2a1xA 308 6.96e+00 1eexA 554 7.29e+00 1dioA c.1.19.3 29650 1dmhA 311 7.56e+00 1dmhA b.3.6.1 22633 1d3gA 367 9.48e+00 1d3gA c.1.4.1 28600 1g99A 408 9.87e+00 1g99A c.55.1.2,c.55.1.2 33457,33458 1pveA 72 1.11e+01 a.189.1.1 104322 1sqhA 312 1.16e+01 d.108.1.5 98966 1qsgA 265 1.18e+01 1eny c.2.1.2 29935 1eueA 86 1.20e+01 1cyo d.120.1.1 59504 2herA 368 1.28e+01 1i7hA 111 1.40e+01 d.15.4.1 71122 1vr5A 547 1.41e+01 2fbqA 235 1.47e+01 1e0eA 55 1.48e+01 1wjcA a.4.10.1 59147 1irdA 141 1.51e+01 a.1.1.2 66286 1qbgA 272 1.55e+01 1d4aA c.23.5.3 31227 1jlwA 219 1.56e+01 a.45.1.1,c.47.1.5 71741,71742 1szwA 379 1.59e+01 d.265.1.4 99047 2azqA 311 1.59e+01 1kqfC 217 1.69e+01 f.21.1.1 72874 2g0qA 173 1.70e+01 1j0fA 100 1.80e+01 c.47.1.14 90739 1zejA 293 1.81e+01 1t1vA 93 1.87e+01 c.47.1.14 106278 1d4aA 273 1.92e+01 1d4aA c.23.5.3 31219 1babA 143 1.93e+01 1abwA a.1.1.2 15235 2f4mB 61 1.94e+01 1tp4A 97 2.16e+01 a.189.1.1 107183 2d9bA 109 2.42e+01 1u7gA 385 2.48e+01 f.44.1.1 107723 1dik 874 2.73e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1ofcX 304 2.98e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1i3zA 103 2.99e+01 d.93.1.1 83667 1s8nA 205 3.01e+01 c.23.1.1 105374 2dhqA 146 3.17e+01 2dhqA c.23.13.1 31382 1vp7A 100 3.24e+01 1bdb 277 3.25e+01 1bdb c.2.1.2 29874 1zxoA 291 3.34e+01 2fha 183 3.35e+01 2fha a.25.1.1 16674 2gk9A 426 3.36e+01 1wjgA 137 3.36e+01 1vplA 256 3.50e+01 1zp4A 304 3.58e+01 1t0qC 86 3.62e+01 d.15.12.1 106222 2cq7A 49 3.67e+01 1kblA 873 3.75e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1jykA 254 3.78e+01 c.68.1.13 67458 1gmlA 178 3.82e+01 c.8.5.2 70273 1hm6A 346 3.88e+01 1avc a.65.1.1 18147 2ftzA 284 3.98e+01 1qwgA 251 4.08e+01 c.1.27.1 96473 1ojrA 274 4.12e+01 c.74.1.1 93147 1q1aA 289 4.15e+01 c.31.1.5 95561 1ekjA 221 4.26e+01 1ekjB c.53.2.1 33364 2fcr 173 4.31e+01 1rcf c.23.5.1 31151 1u5uA 374 4.39e+01 1whsA 255 4.42e+01 1ivyA c.69.1.5 34649 1whtA 256 4.43e+01 1ivyA c.69.1.5 34646 1e3aA 260 4.47e+01 1ajqA d.153.1.2 41838 1j7yA 141 4.48e+01 a.1.1.2 66426 1am2 199 4.49e+01 1am2 b.86.1.2 28381 1gzsB 165 4.50e+01 a.168.1.1 76425 1orvA 728 4.55e+01 b.70.3.1,c.69.1.24 87354,87355 1ypqA 135 4.70e+01 1gw5S 142 4.76e+01 d.110.4.2 70633 1gvdA 52 4.77e+01 a.4.1.3 83338 2b0mA 393 4.78e+01 2clbA 188 4.82e+01 1cxzB 86 4.89e+01 1cxzB a.2.6.1 15705 2d0oA 610 4.94e+01 1w0uA 55 4.94e+01 1zz1A 369 5.06e+01 2dkaA 544 5.10e+01 1pyoB 105 5.19e+01 2g8lA 299 5.24e+01 1l5oA 356 5.45e+01 c.39.1.1 77711 1q35A 320 5.47e+01 c.94.1.1 95661 1tp6A 128 5.52e+01 d.17.4.12 107184 1amuA 563 5.83e+01 1amuA e.23.1.1 43351 1qpaA 345 5.85e+01 1arv a.93.1.1 18585 1cmbA 104 5.95e+01 1cmbA a.43.1.5 17460 1h49A 512 5.99e+01 c.1.8.4 83477 1e55A 512 6.01e+01 1e70M c.1.8.4 28934 2cmwA 310 6.09e+01 1h05A 146 6.16e+01 c.23.13.1 76433 1s5lA 344 6.17e+01 1x52A 124 6.20e+01 1i9bA 217 6.25e+01 1i9bA b.96.1.1 62084 1heiA 451 6.30e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1jvr 137 6.30e+01 1jvr a.61.1.2 18132 2c4wA 176 6.33e+01 1dozA 309 6.34e+01 1ak1 c.92.1.1 35592 1sfkA 76 6.40e+01 a.190.1.1 105488 1djtA 64 6.59e+01 1aho g.3.7.1 44132 1mun 225 6.62e+01 1mun a.96.1.2 18744 1xg1A 67 6.63e+01 1elvA 333 6.63e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1uok 558 6.69e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1e9rA 437 6.98e+01 c.37.1.11 64827 2pspA 106 7.03e+01 2pspA g.16.1.1,g.16.1.1 44730,44731 1v4xB 146 7.18e+01 a.1.1.2 108364 1xmpA 170 7.20e+01 2bsjA 133 7.25e+01 1hx1B 114 7.25e+01 1hx1B a.7.7.1 61350 1d0vA 356 7.25e+01 1d0vA c.39.1.1 32476 2c4jA 218 7.35e+01 2bhoA 130 7.56e+01 1a7tA 232 7.58e+01 1a7tA d.157.1.1 42041 2ddfA 257 7.69e+01 1cmcA 104 7.90e+01 1cmbA a.43.1.5 17462 2h79A 269 8.02e+01 7taa 478 8.03e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1v9sA 208 8.03e+01 1gmuA 143 8.04e+01 b.107.1.1,d.58.38.1 65335,65336 1olmA 403 8.05e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1gr0A 367 8.10e+01 c.2.1.3,d.81.1.3 70379,70380 1xn8A 131 8.16e+01 1cjxA 357 8.24e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1ua4A 455 8.25e+01 c.72.1.3 99128 2fueA 262 8.50e+01 1nmoA 247 8.68e+01 c.135.1.1 91980 1bkcE 256 8.70e+01 1bkcA d.92.1.10 40333 1hyp 80 8.73e+01 1hyp a.52.1.1 17806 1gk9A 260 8.86e+01 d.153.1.2 65246