# TARGET T0386 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0386.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.01368 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 L 0.032 0.504 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.006 0.044 0.388 2 L 0.031 0.698 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.004 0.023 0.223 3 K 0.011 0.826 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.002 0.009 0.142 4 E 0.007 0.884 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.102 5 F 0.009 0.959 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.027 6 M 0.009 0.961 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.019 7 H 0.021 0.918 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.045 8 T 0.041 0.869 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.001 0.065 9 M 0.082 0.808 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.001 0.084 10 K 0.033 0.763 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.013 0.009 0.165 11 N 0.067 0.619 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.032 0.018 0.250 12 T 0.199 0.502 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.068 0.010 0.209 13 G 0.216 0.286 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.016 0.070 0.030 0.364 14 R 0.033 0.046 0.343 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.004 0.003 0.001 0.001 0.018 0.009 0.142 0.390 15 N 0.057 0.024 0.004 0.009 0.001 0.001 0.001 0.001 0.001 0.016 0.001 0.002 0.003 0.001 0.002 0.001 0.064 0.009 0.165 0.640 16 V 0.083 0.029 0.002 0.002 0.003 0.001 0.002 0.001 0.039 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.088 0.009 0.113 0.624 17 N 0.062 0.059 0.004 0.001 0.005 0.006 0.006 0.004 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.119 0.007 0.167 0.553 18 D 0.155 0.037 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.158 0.042 0.142 0.454 19 R 0.283 0.019 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.092 0.019 0.279 0.298 20 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 21 V 0.003 0.001 0.001 0.001 0.035 0.019 0.010 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.002 0.595 0.004 0.073 0.242 22 M 0.005 0.002 0.001 0.001 0.004 0.005 0.003 0.009 0.001 0.001 0.001 0.001 0.002 0.033 0.002 0.002 0.835 0.001 0.018 0.078 23 V 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.001 0.147 0.047 0.005 0.002 0.535 0.001 0.021 0.220 24 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.027 0.001 0.002 0.008 0.001 0.001 0.001 0.886 0.001 0.010 0.057 25 K 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.369 0.009 0.003 0.002 0.004 0.002 0.002 0.004 0.243 0.001 0.072 0.286 26 E 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.329 0.007 0.084 0.557 27 G 0.011 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.002 0.004 0.002 0.003 0.003 0.001 0.001 0.174 0.016 0.080 0.692 28 E 0.513 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.015 0.075 0.321 29 T 0.012 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.112 0.002 0.074 0.787 30 Y 0.005 0.004 0.001 0.002 0.378 0.084 0.047 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.267 0.002 0.016 0.177 31 T 0.020 0.010 0.002 0.001 0.017 0.030 0.010 0.008 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.147 0.005 0.108 0.632 32 G 0.021 0.010 0.002 0.001 0.003 0.001 0.003 0.004 0.003 0.002 0.005 0.001 0.013 0.008 0.006 0.007 0.496 0.005 0.065 0.343 33 T 0.056 0.013 0.001 0.001 0.001 0.002 0.002 0.006 0.001 0.004 0.001 0.002 0.005 0.007 0.007 0.010 0.269 0.008 0.102 0.503 34 Y 0.024 0.017 0.002 0.001 0.003 0.001 0.005 0.002 0.014 0.006 0.005 0.006 0.049 0.045 0.048 0.016 0.400 0.003 0.050 0.303 35 R 0.023 0.019 0.006 0.001 0.005 0.002 0.001 0.002 0.006 0.004 0.005 0.008 0.016 0.019 0.009 0.005 0.288 0.004 0.108 0.469 36 G 0.017 0.011 0.005 0.002 0.004 0.001 0.001 0.001 0.038 0.009 0.014 0.018 0.105 0.048 0.009 0.002 0.173 0.006 0.069 0.469 37 A 0.103 0.011 0.011 0.002 0.004 0.001 0.001 0.001 0.005 0.006 0.007 0.002 0.007 0.001 0.001 0.001 0.153 0.009 0.089 0.588 38 G 0.046 0.018 0.006 0.003 0.001 0.002 0.002 0.001 0.073 0.048 0.003 0.001 0.001 0.001 0.001 0.001 0.092 0.005 0.094 0.603 39 L 0.131 0.026 0.009 0.003 0.017 0.003 0.002 0.001 0.016 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.104 0.007 0.109 0.569 40 E 0.058 0.054 0.004 0.003 0.004 0.005 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.118 0.006 0.167 0.574 41 G 0.206 0.050 0.005 0.003 0.047 0.007 0.010 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.142 0.019 0.091 0.411 42 F 0.218 0.117 0.012 0.006 0.006 0.010 0.009 0.004 0.001 0.001 0.001 0.001 0.002 0.003 0.008 0.003 0.303 0.012 0.051 0.236 43 A 0.025 0.091 0.005 0.001 0.074 0.015 0.014 0.011 0.002 0.001 0.002 0.001 0.003 0.011 0.002 0.002 0.510 0.003 0.027 0.201 44 L 0.008 0.051 0.002 0.001 0.007 0.017 0.011 0.007 0.001 0.001 0.006 0.003 0.352 0.060 0.005 0.001 0.392 0.001 0.008 0.066 45 N 0.014 0.045 0.002 0.001 0.002 0.002 0.007 0.002 0.001 0.009 0.004 0.001 0.017 0.002 0.001 0.001 0.760 0.003 0.017 0.110 46 V 0.015 0.026 0.004 0.001 0.001 0.001 0.001 0.001 0.417 0.023 0.003 0.001 0.001 0.001 0.001 0.001 0.350 0.002 0.017 0.138 47 K 0.007 0.055 0.011 0.001 0.001 0.001 0.001 0.001 0.032 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.541 0.005 0.040 0.301 48 G 0.016 0.020 0.018 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.236 0.014 0.091 0.598 49 A 0.280 0.014 0.010 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.254 0.022 0.076 0.332 50 Y 0.028 0.020 0.006 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.002 0.001 0.638 0.004 0.071 0.216 51 I 0.004 0.007 0.003 0.001 0.307 0.015 0.003 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.483 0.001 0.025 0.138 52 I 0.004 0.007 0.001 0.001 0.020 0.020 0.004 0.002 0.003 0.001 0.002 0.001 0.010 0.014 0.015 0.031 0.663 0.001 0.018 0.182 53 G 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.004 0.004 0.577 0.004 0.061 0.320 54 N 0.008 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.009 0.002 0.009 0.002 0.002 0.002 0.003 0.241 0.006 0.189 0.515 55 I 0.017 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.192 0.008 0.135 0.627 56 D 0.024 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.085 0.008 0.166 0.710 57 H 0.550 0.002 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.020 0.047 0.359 58 L 0.690 0.025 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.006 0.019 0.244 59 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.997 60 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 61 E 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.004 0.140 0.816 62 Q 0.349 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.009 0.201 0.408 63 L 0.282 0.536 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.006 0.002 0.165 64 K 0.053 0.571 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.001 0.120 0.009 0.021 0.210 65 I 0.131 0.355 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.019 0.094 0.008 0.385 66 L 0.434 0.222 0.012 0.001 0.001 0.001 0.009 0.001 0.001 0.002 0.001 0.001 0.003 0.001 0.001 0.001 0.101 0.054 0.011 0.148 67 K 0.023 0.054 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.117 0.011 0.565 0.220 68 P 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.011 0.972 69 G 0.013 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.683 0.003 0.044 0.251 70 D 0.807 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.031 0.011 0.013 0.132 71 K 0.041 0.004 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.448 0.003 0.130 0.366 72 I 0.006 0.001 0.001 0.001 0.002 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.826 0.001 0.031 0.122 73 T 0.002 0.001 0.001 0.001 0.007 0.005 0.003 0.003 0.001 0.001 0.001 0.001 0.002 0.003 0.003 0.002 0.800 0.002 0.034 0.134 74 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.003 0.003 0.725 0.003 0.039 0.208 75 T 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.002 0.004 0.002 0.002 0.003 0.617 0.008 0.084 0.271