# List of top-scoring protein chains for T0386.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjtA 483 3.30e+00 c.2.1.5,d.162.1.2 100833,100834 1xe0A 114 4.46e+00 2d6fA 435 4.71e+00 1rznA 205 5.78e+00 1zp7A 206 5.79e+00 1toqA 133 5.99e+00 1ts9A 102 6.32e+00 1l6pA 125 6.68e+00 b.1.17.1 73626 1jpeA 151 7.16e+00 b.1.17.1 77146 1g6pA 66 7.29e+00 b.40.4.5 65168 1m26A 133 7.45e+00 1ugxA 133 7.88e+00 1jotA 133 1.13e+01 1jotA 1eft 405 1.17e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1i4k1 77 1.19e+01 1i8fA 1m2mA 82 1.22e+01 d.120.1.1 84755 1xzqB 149 1.27e+01 1xzpB 150 1.27e+01 1j7qA 86 1.29e+01 1j7rA a.39.1.5 62700 1dhn 121 1.31e+01 1dhn d.96.1.3 40663 1aipA 405 1.32e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2c78A 405 1.33e+01 2c77A 405 1.33e+01 1exmA 405 1.34e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1i5uA 82 1.38e+01 1cyo d.120.1.1 61824 1khoA 370 1.59e+01 a.124.1.1,b.12.1.3 72489,72490 1c20A 128 1.60e+01 1c20A a.4.3.1 16079 1jexA 94 1.62e+01 1cyo d.120.1.1 62923 1pc0A 61 1.68e+01 b.137.1.1 94426 1m2eA 135 1.70e+01 c.23.1.5 78478 1wjnA 97 1.78e+01 1kqqA 139 1.78e+01 a.4.3.1 72885 1evqA 310 1.83e+01 1jkmA c.69.1.2 34635 1o0xA 262 1.84e+01 d.127.1.1 80755 1m59A 82 1.85e+01 d.120.1.1 84807 1h71P 463 1.91e+01 b.80.7.1,d.92.1.6 76704,76705 1g9kA 463 1.93e+01 b.80.7.1,d.92.1.6 76217,76218 1jzdC 132 1.99e+01 b.1.17.1 84261 1v54B 227 2.02e+01 b.6.1.2,f.17.2.1 100322,100323 1qzgA 187 2.04e+01 b.40.4.3 96643 1u9uA 82 2.14e+01 1u4nA 310 2.17e+01 2f6cA 595 2.19e+01 2f5vA 595 2.20e+01 1tzlA 622 2.25e+01 1tt0A 623 2.25e+01 1c9oA 66 2.34e+01 1mjc b.40.4.5 25325 1i5fA 66 2.35e+01 b.40.4.5 66034 1hzbA 66 2.36e+01 b.40.4.5 65965 1v1iA 109 2.37e+01 b.83.1.1,h.1.17.1 108255,108256 2crmA 120 2.37e+01 1hzaA 67 2.38e+01 b.40.4.5 65963 1b23P 405 2.42e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25689,25729,32124 1i9cA 137 2.52e+01 c.23.6.1 71136 1hkoA 104 2.53e+01 d.120.1.1 83554 1hz9A 66 2.54e+01 b.40.4.5 65961 1hzcA 66 2.58e+01 b.40.4.5 65967 1b1a 137 2.62e+01 1be1 c.23.6.1 31242 1ccwA 137 2.63e+01 1be1 c.23.6.1 31238 2au3A 407 2.70e+01 2ainA 93 2.73e+01 1oktA 211 2.80e+01 a.45.1.1,c.47.1.5 93272,93273 1p1mA 406 2.81e+01 b.92.1.4,c.1.9.9 87696,87697 2aawA 222 2.82e+01 1t2mA 101 2.82e+01 1aqa 94 2.85e+01 1cyo d.120.1.1 41075 1j6pA 418 2.85e+01 b.92.1.4,c.1.9.9 77089,77090 1i87A 98 2.93e+01 1cyo d.120.1.1 61950 1bfx 99 2.94e+01 1cyo d.120.1.1 41078 1pdkB 157 2.95e+01 1pdkB b.2.3.2 22427 1xz9A 101 2.98e+01 1s04A 110 3.04e+01 1ib7A 94 3.10e+01 1cyo d.120.1.1 62154 1vybA 238 3.12e+01 d.151.1.1 108897 1zjjA 263 3.14e+01 1z5yD 143 3.16e+01 2h3lA 103 3.63e+01 1qiuA 264 3.72e+01 1qhvA b.21.1.1,b.83.1.1 23843,28208 1z1yA 186 3.76e+01 1qd6C 240 3.76e+01 1qd5A 1vslA 146 3.77e+01 1cxqA c.55.3.2 33637 1vsmA 146 3.78e+01 1cxqA c.55.3.2 33635 1l3iA 192 3.82e+01 c.66.1.22 77676 2d9rA 104 3.82e+01 2fwkA 121 3.83e+01 1xxqA 161 3.93e+01 1vsd 152 4.00e+01 1cxqA c.55.3.2 33625 1ykfA 352 4.01e+01 1pedA b.35.1.2,c.2.1.1 24757,29773 1ux6A 350 4.10e+01 b.29.1.16,g.75.1.1 100145,100146 1fw3A 275 4.12e+01 1qd5A f.4.2.1 60054 1qd5A 275 4.18e+01 1qd5A f.4.2.1 43748 1r8jA 289 4.20e+01 a.186.1.1,c.23.1.5 104847,104848 4ubpC 570 4.21e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1ie7C 570 4.21e+01 1ubpC b.92.1.1,c.1.9.2 62315,62316 2a5zA 262 4.24e+01 1cyo 93 4.33e+01 1cyo d.120.1.1 41065 1tp7A 460 4.47e+01 1xr7A 460 4.47e+01 1ig0A 319 4.50e+01 1ig0A b.82.6.1,c.100.1.1 62354,62355 1ilzA 275 4.52e+01 f.4.2.1 66209 1m6jA 261 4.53e+01 c.1.1.1 78693 1do9A 94 4.57e+01 1cyo d.120.1.1 41084 1yezA 68 4.60e+01 1iktA 120 4.61e+01 d.106.1.1 66188 1u0mA 382 4.62e+01 c.95.1.2,c.95.1.2 107557,107558 1yo8A 634 4.66e+01 1yavA 159 4.71e+01 1wqaA 455 4.74e+01 1m2iA 82 4.77e+01 d.120.1.1 84752 1mfgA 95 4.80e+01 b.36.1.1 79043 1a5v 158 4.92e+01 1cxqA c.55.3.2 33629 1gtzA 156 4.98e+01 c.23.13.1 70539 1h641 75 5.04e+01 1m8vA 77 5.04e+01 b.38.1.1 78814 1asu 162 5.11e+01 1cxqA c.55.3.2 33626 1r7hA 75 5.19e+01 c.47.1.1 97196 1cz9A 162 5.20e+01 1cxqA c.55.3.2 33623 1zq1A 438 5.21e+01 1cxqA 162 5.24e+01 1cxqA c.55.3.2 33621 1gu1A 156 5.27e+01 c.23.13.1 70563 2bt4A 157 5.29e+01 2futA 748 5.49e+01 2fuqA 747 5.49e+01 1m5zA 91 5.50e+01 b.36.1.1 78676 2ax5A 107 5.55e+01 1mgqA 83 5.56e+01 b.38.1.1 79099 1xtqA 177 5.88e+01 1ass 159 6.00e+01 1a6dA c.8.5.2 30818 1xzpA 482 6.52e+01 1jmxA 494 6.53e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1v3fA 120 6.65e+01 a.4.5.31 100289 1c0mA 238 6.67e+01 1cxqA b.34.7.1,c.55.3.2 24635,33640 2etrA 415 6.97e+01 1csp 67 6.98e+01 1mjc b.40.4.5 25321 1nlxA 111 7.38e+01 a.24.17.1 80637 1quuA 250 7.42e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1u9mA 82 7.43e+01 1jqiA 388 7.50e+01 a.29.3.1,e.6.1.1 67087,67088 1jriA 85 7.51e+01 b.38.1.1 67121 1ehbA 82 7.58e+01 1cyo d.120.1.1 41066 1zoyB 252 7.63e+01 1jbmA 86 7.75e+01 b.38.1.1 84143 1eajA 126 7.76e+01 1f5wA b.1.1.1 59401 1jewR 120 7.82e+01 i.6.1.1 66618 1rsfA 126 7.95e+01 b.1.1.1 97809 1lojA 87 7.99e+01 b.38.1.1 84650 1kacB 124 8.02e+01 1neu b.1.1.1 19707 1bjnA 360 8.12e+01 1bjnA c.67.1.4 34469 1m20A 82 8.53e+01 d.120.1.1 78461 1f3uB 171 8.56e+01 1f3uB b.65.1.1 27525 1vj0A 380 8.79e+01 b.35.1.2,c.2.1.1 100786,100787 1crl 534 8.98e+01 1thg c.69.1.17 34765