CreatePredAlphaCost pred_alpha2k alpha11 T0385.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0385.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0385.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 20 dry6.5 30 dry8 20 dry12 5 \ phobic_fit 0.3 \ sidechain 5 \ n_ca_c 10 bad_peptide 20 \ bystroff 5 \ soft_clashes 70 backbone_clashes 2 \ break 150 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 12 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 #from try32-opt2.helices HelixConstraint (T0385)S4 (T0385)T11 1 HelixConstraint (T0385)G9 (T0385)S15 1 HelixConstraint (T0385)G19 (T0385)G41 1 HelixConstraint (T0385)G41 (T0385)L46 1 HelixConstraint (T0385)G50 (T0385)G77 1 HelixConstraint (T0385)S95 (T0385)E122 1 HelixConstraint (T0385)T123 (T0385)S131 1 HelixConstraint (T0385)A130 (T0385)W151 1 HelixConstraint (T0385)A155 (T0385)G160 1 # from alignment to 2fkzA Constraint L30.CB V69.CB -10 4.3 4.7 0.3 Constraint A29.CB V69.CB -10 5.7 6.0 0.3 Constraint A25.CB V117.CB -10 4.0 4.4 0.3 Constraint A25.CB A116.CB -10 4.7 5.2 0.3 Constraint L26.CB L73.CB -10 4.8 5.1 0.3 Constraint L26.CB M72.CB -10 6.0 6.2 0.3 Constraint W144.CB A103.CB -10 5.6 5.8 0.3 Constraint W144.CB V104.CB -10 4.2 4.5 0.3 Constraint A29.CB V117.CB -10 5.7 5.9 0.3