CreatePredAlphaCost pred_alpha2k alpha11 T0385.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0385.t04.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha06 alpha11 T0385.t06.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 20 dry6.5 40 dry8 25 dry12 5 \
	phobic_fit 0.3 \
	sidechain 3 \
	n_ca_c	5 bad_peptide 10 \
	bystroff 5 \
	soft_clashes 40  backbone_clashes 2 \
	break 110  \
	pred_alpha2k 2 \
	pred_alpha04 2 \
	pred_alpha06 2 \
	constraints 10 \
	hbond_geom 5 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 50 \
	hbond_geom_beta_pair 100 \
	missing_atoms 1 


# added to trying to "unhelix" the linker that is a bit too short
StrandConstraint	A84	P90	0.1
StrandConstraint	L46	P48	5
StrandConstraint	A121	T123	3

# from T0385.dssp-ehl2.constraints
HelixConstraint 	S20	A45	2
HelixConstraint 	P49	A75	2
HelixConstraint 	A96	H120	1.5
HelixConstraint 	A124	R146	1.5

# from align 1 to 1vjxA

Constraint	A35.CB	M106.CB	-10	8.5	10	0.3
Constraint	V43.CB	A99.CB	-10	5.8	8	0.3
Constraint	L54.CB	V147.CB	-10	7.1	10	0.3
Constraint	L54.CB	W144.CB	-10	9.1	12	0.3
Constraint	A58.CB	M140.CB	-10	5.8	8	0.3
#Constraint	V43.CB	V55.CB	-10	4.7	7	0.3
Constraint	A25.CB	V117.CB	-10	4.7	7	0.3
Constraint	A29.CB	A113.CB	-10	6.2	10	0.3
Constraint	A29.CB	W114.CB	-10	6.1	9	0.3

# from try2-opt2

Constraint	A21.CB	A121.CB	-10	6.1	8	0.3
Constraint	A21.CB	V117.CB	-10	4.4	6	0.3
#Constraint	A25.CB	A133.CB	-10	7.2	9	0.3
Constraint	A25.CB	V117.CB	-10	5.4	7	0.3
Constraint	V32.CB	M140.CB	-10	8.4	11	0.3
Constraint	V32.CB	M106.CB	-10	4.5	6	0.3
Constraint	M72.CB	F129.CB	-10	6.5	8	0.3
Constraint	M72.CB	V128.CB	-10	8.0	10	0.3
#constraint	V69.CB	A133.CB	-10	8.7	10	0.3
Constraint	W114.CB A138.CB -10	8	9.8	0.3