# TARGET T0385 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0385.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 17 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.037 0.014 0.004 0.023 0.169 0.753 2 T 0.076 0.096 0.006 0.032 0.326 0.464 3 S 0.059 0.020 0.008 0.022 0.354 0.537 4 S 0.031 0.017 0.009 0.017 0.407 0.520 5 E 0.026 0.018 0.005 0.007 0.296 0.647 6 P 0.031 0.036 0.010 0.014 0.211 0.698 7 A 0.021 0.022 0.025 0.017 0.316 0.599 8 H 0.024 0.010 0.046 0.026 0.352 0.541 9 G 0.062 0.038 0.069 0.050 0.303 0.478 10 A 0.083 0.047 0.055 0.059 0.276 0.481 11 T 0.087 0.049 0.035 0.043 0.337 0.450 12 P 0.061 0.020 0.023 0.038 0.319 0.539 13 K 0.040 0.026 0.014 0.029 0.263 0.628 14 R 0.030 0.044 0.012 0.034 0.312 0.568 15 S 0.022 0.028 0.013 0.044 0.443 0.451 16 P 0.017 0.015 0.045 0.093 0.550 0.281 17 S 0.008 0.009 0.033 0.085 0.561 0.303 18 E 0.005 0.008 0.028 0.098 0.510 0.351 19 G 0.002 0.004 0.014 0.206 0.192 0.582 20 S 0.001 0.002 0.018 0.782 0.089 0.109 21 A 0.001 0.001 0.016 0.881 0.064 0.037 22 D 0.001 0.001 0.009 0.932 0.029 0.028 23 N 0.001 0.001 0.002 0.987 0.006 0.005 24 A 0.001 0.001 0.001 0.990 0.004 0.004 25 A 0.001 0.001 0.002 0.995 0.002 0.001 26 L 0.001 0.001 0.001 0.997 0.001 0.001 27 C 0.001 0.001 0.001 0.999 0.001 0.001 28 D 0.001 0.001 0.001 0.998 0.001 0.001 29 A 0.001 0.001 0.001 0.997 0.001 0.001 30 L 0.001 0.001 0.001 0.996 0.001 0.002 31 A 0.001 0.001 0.001 0.991 0.003 0.004 32 V 0.001 0.001 0.001 0.989 0.003 0.007 33 E 0.001 0.001 0.001 0.998 0.001 0.001 34 H 0.001 0.001 0.001 0.997 0.001 0.002 35 A 0.001 0.001 0.001 0.999 0.001 0.001 36 T 0.001 0.001 0.001 0.999 0.001 0.001 37 I 0.001 0.001 0.001 0.999 0.001 0.001 38 Y 0.001 0.001 0.001 0.999 0.001 0.001 39 G 0.001 0.001 0.001 0.999 0.001 0.001 40 Y 0.001 0.001 0.001 0.999 0.001 0.001 41 G 0.001 0.001 0.001 0.993 0.003 0.003 42 I 0.002 0.001 0.002 0.989 0.003 0.004 43 V 0.009 0.001 0.006 0.961 0.011 0.013 44 S 0.022 0.002 0.017 0.920 0.018 0.021 45 A 0.083 0.005 0.038 0.716 0.070 0.089 46 L 0.104 0.012 0.037 0.530 0.123 0.194 47 S 0.073 0.029 0.019 0.168 0.200 0.512 48 P 0.016 0.008 0.008 0.040 0.388 0.540 49 P 0.002 0.001 0.220 0.235 0.462 0.080 50 G 0.002 0.002 0.275 0.261 0.408 0.052 51 V 0.002 0.002 0.231 0.451 0.283 0.030 52 N 0.003 0.002 0.039 0.717 0.124 0.115 53 F 0.004 0.002 0.009 0.880 0.047 0.058 54 L 0.003 0.002 0.009 0.951 0.018 0.017 55 V 0.004 0.001 0.004 0.970 0.010 0.011 56 A 0.002 0.001 0.003 0.988 0.004 0.003 57 D 0.001 0.001 0.002 0.987 0.005 0.005 58 A 0.001 0.001 0.001 0.974 0.005 0.019 59 L 0.001 0.001 0.001 0.991 0.002 0.006 60 K 0.001 0.001 0.001 0.995 0.002 0.003 61 Q 0.001 0.001 0.001 0.995 0.002 0.003 62 H 0.001 0.001 0.001 0.993 0.002 0.004 63 R 0.001 0.001 0.001 0.996 0.002 0.002 64 H 0.001 0.001 0.001 0.994 0.003 0.003 65 R 0.001 0.001 0.001 0.994 0.002 0.004 66 R 0.001 0.001 0.001 0.997 0.001 0.002 67 D 0.001 0.001 0.001 0.997 0.001 0.001 68 D 0.001 0.001 0.001 0.997 0.001 0.001 69 V 0.001 0.001 0.001 0.998 0.001 0.001 70 I 0.001 0.001 0.001 0.997 0.001 0.001 71 V 0.001 0.001 0.001 0.995 0.002 0.002 72 M 0.001 0.001 0.001 0.991 0.004 0.003 73 L 0.001 0.001 0.002 0.979 0.010 0.007 74 S 0.001 0.001 0.017 0.930 0.033 0.019 75 A 0.001 0.001 0.021 0.866 0.060 0.051 76 R 0.004 0.003 0.026 0.710 0.105 0.153 77 G 0.012 0.005 0.009 0.071 0.236 0.666 78 V 0.014 0.006 0.014 0.030 0.236 0.700 79 T 0.029 0.018 0.016 0.025 0.252 0.660 80 A 0.044 0.007 0.014 0.024 0.224 0.687 81 P 0.080 0.026 0.020 0.039 0.198 0.636 82 I 0.082 0.022 0.054 0.073 0.288 0.482 83 A 0.057 0.011 0.133 0.095 0.339 0.365 84 A 0.031 0.006 0.278 0.099 0.390 0.197 85 A 0.026 0.007 0.270 0.090 0.436 0.170 86 G 0.035 0.010 0.158 0.075 0.439 0.282 87 Y 0.082 0.015 0.058 0.036 0.419 0.390 88 Q 0.129 0.030 0.020 0.015 0.300 0.507 89 L 0.208 0.037 0.007 0.007 0.228 0.514 90 P 0.176 0.004 0.004 0.004 0.186 0.626 91 M 0.162 0.017 0.007 0.004 0.157 0.653 92 Q 0.144 0.014 0.005 0.003 0.163 0.671 93 V 0.093 0.012 0.005 0.005 0.149 0.735 94 S 0.037 0.018 0.004 0.006 0.152 0.783 95 S 0.018 0.010 0.002 0.016 0.128 0.825 96 A 0.001 0.001 0.024 0.845 0.059 0.071 97 A 0.001 0.001 0.023 0.883 0.059 0.033 98 D 0.001 0.001 0.031 0.920 0.039 0.009 99 A 0.001 0.001 0.005 0.978 0.011 0.006 100 A 0.001 0.001 0.002 0.990 0.006 0.002 101 R 0.001 0.001 0.001 0.986 0.008 0.005 102 L 0.001 0.001 0.001 0.990 0.003 0.005 103 A 0.001 0.001 0.001 0.995 0.001 0.002 104 V 0.001 0.001 0.002 0.992 0.003 0.003 105 R 0.001 0.001 0.004 0.983 0.006 0.007 106 M 0.001 0.001 0.004 0.983 0.007 0.006 107 E 0.001 0.001 0.004 0.982 0.008 0.005 108 N 0.001 0.001 0.004 0.970 0.012 0.014 109 D 0.001 0.001 0.005 0.922 0.020 0.053 110 G 0.001 0.001 0.002 0.976 0.005 0.015 111 A 0.001 0.001 0.002 0.984 0.005 0.008 112 T 0.001 0.001 0.002 0.991 0.003 0.004 113 A 0.001 0.001 0.003 0.992 0.002 0.002 114 W 0.001 0.001 0.002 0.995 0.001 0.001 115 R 0.001 0.001 0.002 0.994 0.002 0.002 116 A 0.001 0.001 0.001 0.995 0.002 0.001 117 V 0.001 0.001 0.002 0.995 0.002 0.002 118 V 0.001 0.001 0.007 0.984 0.006 0.003 119 E 0.001 0.001 0.013 0.965 0.014 0.007 120 H 0.002 0.001 0.025 0.921 0.030 0.022 121 A 0.007 0.009 0.027 0.652 0.134 0.172 122 E 0.007 0.013 0.012 0.273 0.168 0.526 123 T 0.001 0.002 0.001 0.109 0.133 0.754 124 A 0.001 0.001 0.004 0.977 0.014 0.006 125 D 0.001 0.001 0.003 0.982 0.013 0.001 126 D 0.001 0.001 0.005 0.987 0.007 0.001 127 R 0.001 0.001 0.003 0.992 0.003 0.001 128 V 0.001 0.001 0.004 0.990 0.004 0.002 129 F 0.001 0.001 0.004 0.989 0.003 0.002 130 A 0.001 0.001 0.003 0.990 0.003 0.004 131 S 0.001 0.001 0.003 0.989 0.003 0.004 132 T 0.001 0.001 0.004 0.984 0.004 0.007 133 A 0.001 0.001 0.004 0.978 0.007 0.010 134 L 0.001 0.001 0.005 0.962 0.012 0.021 135 T 0.001 0.001 0.004 0.943 0.017 0.036 136 E 0.001 0.001 0.003 0.963 0.012 0.022 137 S 0.001 0.001 0.004 0.978 0.007 0.010 138 A 0.001 0.001 0.005 0.968 0.012 0.015 139 V 0.001 0.001 0.005 0.980 0.009 0.007 140 M 0.001 0.001 0.004 0.980 0.009 0.007 141 A 0.001 0.001 0.003 0.975 0.011 0.009 142 T 0.002 0.001 0.004 0.961 0.015 0.017 143 R 0.005 0.002 0.007 0.932 0.029 0.025 144 W 0.004 0.001 0.009 0.919 0.035 0.032 145 N 0.006 0.002 0.024 0.797 0.090 0.081 146 R 0.013 0.003 0.050 0.637 0.153 0.144 147 V 0.023 0.010 0.059 0.511 0.215 0.181 148 L 0.027 0.010 0.075 0.283 0.300 0.305 149 G 0.028 0.004 0.026 0.044 0.384 0.515 150 A 0.065 0.010 0.027 0.024 0.323 0.552 151 W 0.200 0.027 0.010 0.011 0.271 0.481 152 P 0.326 0.011 0.009 0.012 0.165 0.477 153 I 0.621 0.019 0.010 0.011 0.094 0.243 154 T 0.682 0.033 0.018 0.013 0.083 0.170 155 A 0.546 0.013 0.033 0.023 0.139 0.247 156 A 0.318 0.020 0.063 0.031 0.208 0.359 157 F 0.137 0.037 0.032 0.016 0.370 0.408 158 P 0.094 0.006 0.024 0.013 0.419 0.443 159 G 0.055 0.019 0.017 0.009 0.370 0.529 160 G 0.041 0.044 0.012 0.013 0.298 0.593 161 D 0.024 0.015 0.008 0.018 0.174 0.761 162 E 0.002 0.004 0.003 0.009 0.057 0.927