# TARGET T0385 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0385.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 36.4986 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.044 0.005 0.010 0.037 0.148 0.756 2 T 0.131 0.044 0.020 0.070 0.200 0.535 3 S 0.117 0.042 0.024 0.069 0.253 0.495 4 S 0.107 0.046 0.028 0.050 0.308 0.462 5 E 0.079 0.016 0.038 0.050 0.417 0.401 6 P 0.051 0.018 0.090 0.069 0.458 0.314 7 A 0.054 0.034 0.121 0.066 0.464 0.261 8 H 0.078 0.036 0.187 0.058 0.428 0.213 9 G 0.056 0.038 0.104 0.059 0.450 0.293 10 A 0.062 0.051 0.053 0.036 0.382 0.416 11 T 0.051 0.035 0.026 0.019 0.453 0.416 12 P 0.027 0.014 0.108 0.030 0.569 0.252 13 K 0.029 0.016 0.120 0.042 0.530 0.263 14 R 0.044 0.045 0.098 0.044 0.459 0.310 15 S 0.025 0.031 0.019 0.015 0.476 0.434 16 P 0.019 0.024 0.036 0.025 0.435 0.462 17 S 0.021 0.036 0.041 0.025 0.519 0.357 18 E 0.020 0.029 0.045 0.039 0.544 0.323 19 G 0.014 0.012 0.017 0.047 0.395 0.515 20 S 0.010 0.015 0.033 0.389 0.248 0.305 21 A 0.005 0.010 0.022 0.742 0.095 0.126 22 D 0.002 0.001 0.010 0.944 0.025 0.019 23 N 0.001 0.001 0.003 0.977 0.010 0.008 24 A 0.001 0.001 0.003 0.990 0.004 0.002 25 A 0.001 0.001 0.007 0.985 0.005 0.002 26 L 0.001 0.001 0.008 0.981 0.007 0.002 27 C 0.001 0.001 0.005 0.987 0.005 0.002 28 D 0.001 0.001 0.003 0.991 0.004 0.002 29 A 0.001 0.001 0.003 0.994 0.002 0.001 30 L 0.001 0.001 0.002 0.995 0.002 0.001 31 A 0.001 0.001 0.002 0.995 0.003 0.001 32 V 0.001 0.001 0.003 0.994 0.002 0.001 33 E 0.001 0.001 0.003 0.993 0.003 0.001 34 H 0.001 0.001 0.005 0.991 0.003 0.001 35 A 0.001 0.001 0.004 0.991 0.004 0.001 36 T 0.001 0.001 0.004 0.991 0.004 0.001 37 I 0.001 0.001 0.005 0.985 0.006 0.002 38 Y 0.003 0.001 0.011 0.963 0.018 0.005 39 G 0.006 0.001 0.011 0.934 0.037 0.012 40 Y 0.014 0.001 0.016 0.860 0.053 0.056 41 G 0.039 0.004 0.060 0.577 0.146 0.174 42 I 0.049 0.009 0.119 0.643 0.093 0.087 43 V 0.078 0.013 0.133 0.614 0.101 0.060 44 S 0.050 0.008 0.091 0.592 0.152 0.107 45 A 0.040 0.005 0.091 0.435 0.229 0.201 46 L 0.061 0.032 0.059 0.280 0.285 0.283 47 S 0.043 0.019 0.019 0.133 0.371 0.414 48 P 0.018 0.008 0.014 0.097 0.373 0.490 49 P 0.007 0.009 0.029 0.217 0.296 0.441 50 G 0.010 0.013 0.025 0.307 0.215 0.431 51 V 0.002 0.001 0.014 0.933 0.025 0.025 52 N 0.003 0.001 0.006 0.944 0.016 0.030 53 F 0.002 0.001 0.005 0.974 0.010 0.009 54 L 0.003 0.001 0.007 0.973 0.011 0.006 55 V 0.001 0.001 0.003 0.984 0.007 0.003 56 A 0.001 0.001 0.003 0.991 0.004 0.002 57 D 0.001 0.001 0.003 0.988 0.005 0.003 58 A 0.001 0.001 0.003 0.985 0.006 0.006 59 L 0.001 0.001 0.003 0.984 0.007 0.006 60 K 0.001 0.001 0.005 0.979 0.010 0.007 61 Q 0.001 0.001 0.008 0.943 0.027 0.021 62 H 0.001 0.001 0.009 0.943 0.024 0.022 63 R 0.001 0.001 0.011 0.959 0.018 0.011 64 H 0.001 0.001 0.017 0.927 0.028 0.027 65 R 0.001 0.001 0.011 0.946 0.012 0.030 66 R 0.001 0.001 0.005 0.971 0.010 0.014 67 D 0.001 0.001 0.002 0.993 0.003 0.002 68 D 0.001 0.001 0.002 0.996 0.002 0.001 69 V 0.001 0.001 0.001 0.998 0.001 0.001 70 I 0.001 0.001 0.001 0.999 0.001 0.001 71 V 0.001 0.001 0.001 0.997 0.001 0.001 72 M 0.001 0.001 0.001 0.995 0.002 0.002 73 L 0.001 0.001 0.003 0.993 0.003 0.001 74 S 0.001 0.001 0.005 0.990 0.004 0.001 75 A 0.001 0.001 0.005 0.988 0.006 0.002 76 R 0.001 0.001 0.008 0.950 0.010 0.031 77 G 0.001 0.001 0.001 0.002 0.028 0.969 78 V 0.010 0.009 0.004 0.003 0.086 0.888 79 T 0.074 0.035 0.008 0.005 0.139 0.739 80 A 0.153 0.039 0.020 0.013 0.176 0.598 81 P 0.116 0.021 0.050 0.029 0.212 0.572 82 I 0.103 0.017 0.099 0.038 0.294 0.448 83 A 0.107 0.019 0.154 0.050 0.294 0.376 84 A 0.073 0.015 0.278 0.052 0.313 0.269 85 A 0.059 0.014 0.204 0.074 0.330 0.319 86 G 0.051 0.006 0.028 0.010 0.254 0.651 87 Y 0.179 0.019 0.006 0.004 0.148 0.644 88 Q 0.224 0.045 0.004 0.003 0.132 0.593 89 L 0.224 0.037 0.005 0.004 0.138 0.591 90 P 0.161 0.011 0.006 0.005 0.230 0.588 91 M 0.209 0.022 0.013 0.006 0.194 0.556 92 Q 0.167 0.023 0.011 0.008 0.323 0.468 93 V 0.145 0.039 0.012 0.009 0.236 0.558 94 S 0.053 0.034 0.005 0.007 0.249 0.652 95 S 0.013 0.009 0.003 0.023 0.155 0.798 96 A 0.001 0.001 0.006 0.983 0.007 0.004 97 A 0.001 0.001 0.004 0.989 0.005 0.002 98 D 0.001 0.001 0.003 0.990 0.005 0.002 99 A 0.001 0.001 0.002 0.996 0.001 0.001 100 A 0.001 0.001 0.001 0.997 0.001 0.001 101 R 0.001 0.001 0.002 0.996 0.001 0.001 102 L 0.001 0.001 0.002 0.994 0.002 0.001 103 A 0.001 0.001 0.002 0.992 0.003 0.001 104 V 0.001 0.001 0.004 0.987 0.006 0.002 105 R 0.001 0.001 0.007 0.960 0.017 0.013 106 M 0.002 0.001 0.014 0.891 0.041 0.050 107 E 0.003 0.002 0.014 0.910 0.038 0.033 108 N 0.001 0.001 0.012 0.952 0.023 0.011 109 D 0.001 0.001 0.010 0.953 0.019 0.017 110 G 0.003 0.001 0.014 0.940 0.020 0.022 111 A 0.006 0.001 0.011 0.958 0.012 0.011 112 T 0.010 0.002 0.012 0.959 0.011 0.007 113 A 0.006 0.001 0.011 0.971 0.008 0.003 114 W 0.004 0.001 0.012 0.964 0.016 0.003 115 R 0.001 0.001 0.022 0.955 0.019 0.002 116 A 0.002 0.001 0.025 0.946 0.022 0.004 117 V 0.002 0.001 0.028 0.931 0.021 0.017 118 V 0.002 0.002 0.127 0.825 0.031 0.014 119 E 0.003 0.002 0.126 0.781 0.064 0.024 120 H 0.005 0.002 0.170 0.689 0.092 0.043 121 A 0.012 0.011 0.092 0.428 0.245 0.212 122 E 0.012 0.014 0.033 0.321 0.258 0.362 123 T 0.010 0.004 0.006 0.091 0.288 0.600 124 A 0.001 0.001 0.011 0.834 0.097 0.056 125 D 0.002 0.003 0.011 0.860 0.074 0.050 126 D 0.001 0.001 0.005 0.978 0.011 0.006 127 R 0.001 0.001 0.004 0.988 0.004 0.003 128 V 0.001 0.001 0.002 0.991 0.003 0.002 129 F 0.001 0.001 0.003 0.992 0.002 0.001 130 A 0.001 0.001 0.005 0.989 0.003 0.001 131 S 0.003 0.001 0.024 0.963 0.008 0.001 132 T 0.004 0.001 0.036 0.932 0.023 0.005 133 A 0.005 0.001 0.032 0.912 0.027 0.023 134 L 0.003 0.003 0.016 0.858 0.035 0.084 135 T 0.002 0.001 0.016 0.892 0.032 0.057 136 E 0.001 0.001 0.006 0.981 0.008 0.005 137 S 0.001 0.001 0.003 0.991 0.003 0.002 138 A 0.001 0.001 0.003 0.994 0.002 0.001 139 V 0.001 0.001 0.003 0.995 0.001 0.001 140 M 0.001 0.001 0.002 0.997 0.001 0.001 141 A 0.001 0.001 0.001 0.997 0.001 0.001 142 T 0.001 0.001 0.001 0.997 0.001 0.001 143 R 0.001 0.001 0.001 0.997 0.002 0.001 144 W 0.001 0.001 0.001 0.996 0.002 0.001 145 N 0.001 0.001 0.002 0.994 0.003 0.001 146 R 0.001 0.001 0.004 0.986 0.007 0.002 147 V 0.001 0.001 0.007 0.967 0.019 0.006 148 L 0.001 0.001 0.013 0.907 0.047 0.032 149 G 0.003 0.002 0.021 0.258 0.224 0.492 150 A 0.008 0.011 0.024 0.082 0.259 0.615 151 W 0.030 0.014 0.025 0.031 0.311 0.588 152 P 0.057 0.030 0.026 0.025 0.328 0.533 153 I 0.109 0.036 0.042 0.026 0.311 0.476 154 T 0.132 0.027 0.055 0.027 0.325 0.434 155 A 0.161 0.021 0.068 0.027 0.363 0.362 156 A 0.204 0.044 0.058 0.023 0.305 0.366 157 F 0.175 0.042 0.029 0.013 0.389 0.353 158 P 0.131 0.033 0.021 0.012 0.345 0.456 159 G 0.067 0.034 0.012 0.009 0.310 0.567 160 G 0.042 0.021 0.008 0.009 0.262 0.658 161 D 0.018 0.011 0.005 0.015 0.183 0.767 162 E 0.010 0.003 0.006 0.092 0.140 0.749