# TARGET T0385 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0385.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 24.9235 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.017 0.006 0.003 0.004 0.073 0.897 2 T 0.076 0.029 0.008 0.015 0.115 0.756 3 S 0.056 0.047 0.015 0.019 0.156 0.707 4 S 0.056 0.059 0.022 0.019 0.230 0.614 5 E 0.062 0.022 0.040 0.025 0.369 0.482 6 P 0.044 0.014 0.092 0.057 0.443 0.351 7 A 0.041 0.038 0.149 0.077 0.448 0.248 8 H 0.055 0.030 0.164 0.086 0.454 0.210 9 G 0.034 0.019 0.084 0.058 0.474 0.331 10 A 0.032 0.029 0.048 0.045 0.389 0.457 11 T 0.046 0.038 0.036 0.024 0.382 0.473 12 P 0.029 0.018 0.169 0.053 0.434 0.297 13 K 0.037 0.027 0.150 0.047 0.393 0.346 14 R 0.060 0.065 0.084 0.057 0.350 0.384 15 S 0.024 0.028 0.014 0.016 0.449 0.469 16 P 0.008 0.011 0.020 0.014 0.487 0.459 17 S 0.009 0.015 0.021 0.014 0.640 0.301 18 E 0.008 0.018 0.032 0.043 0.643 0.257 19 G 0.007 0.016 0.024 0.095 0.359 0.499 20 S 0.008 0.013 0.033 0.463 0.260 0.223 21 A 0.004 0.006 0.031 0.772 0.091 0.096 22 D 0.002 0.002 0.014 0.938 0.025 0.019 23 N 0.003 0.001 0.012 0.947 0.020 0.017 24 A 0.002 0.001 0.008 0.971 0.010 0.008 25 A 0.002 0.001 0.008 0.978 0.006 0.006 26 L 0.001 0.001 0.005 0.990 0.003 0.002 27 C 0.001 0.001 0.003 0.994 0.001 0.002 28 D 0.001 0.001 0.003 0.995 0.001 0.001 29 A 0.001 0.001 0.003 0.995 0.001 0.001 30 L 0.001 0.001 0.002 0.995 0.001 0.001 31 A 0.001 0.001 0.004 0.989 0.004 0.002 32 V 0.001 0.001 0.008 0.984 0.006 0.001 33 E 0.001 0.001 0.012 0.979 0.006 0.003 34 H 0.001 0.001 0.016 0.967 0.008 0.007 35 A 0.002 0.001 0.028 0.940 0.020 0.010 36 T 0.006 0.001 0.024 0.938 0.017 0.014 37 I 0.022 0.005 0.029 0.877 0.031 0.036 38 Y 0.053 0.004 0.041 0.805 0.059 0.038 39 G 0.068 0.003 0.037 0.777 0.077 0.038 40 Y 0.078 0.005 0.035 0.698 0.100 0.084 41 G 0.096 0.007 0.038 0.390 0.171 0.298 42 I 0.173 0.022 0.094 0.387 0.132 0.191 43 V 0.332 0.022 0.115 0.288 0.125 0.119 44 S 0.221 0.021 0.175 0.259 0.186 0.139 45 A 0.137 0.018 0.123 0.134 0.316 0.272 46 L 0.119 0.036 0.042 0.092 0.334 0.376 47 S 0.047 0.022 0.008 0.051 0.310 0.561 48 P 0.016 0.010 0.007 0.044 0.555 0.367 49 P 0.005 0.008 0.034 0.345 0.434 0.175 50 G 0.005 0.006 0.046 0.508 0.253 0.182 51 V 0.002 0.002 0.014 0.947 0.023 0.011 52 N 0.004 0.002 0.005 0.939 0.013 0.037 53 F 0.003 0.001 0.005 0.977 0.008 0.007 54 L 0.004 0.001 0.006 0.977 0.008 0.005 55 V 0.001 0.001 0.003 0.991 0.003 0.002 56 A 0.001 0.001 0.003 0.993 0.002 0.001 57 D 0.001 0.001 0.002 0.993 0.002 0.002 58 A 0.001 0.001 0.003 0.987 0.003 0.007 59 L 0.001 0.001 0.003 0.988 0.004 0.005 60 K 0.001 0.001 0.005 0.977 0.009 0.009 61 Q 0.001 0.001 0.006 0.960 0.015 0.017 62 H 0.001 0.001 0.011 0.952 0.016 0.020 63 R 0.001 0.001 0.009 0.975 0.007 0.007 64 H 0.001 0.001 0.017 0.963 0.008 0.011 65 R 0.001 0.001 0.008 0.975 0.004 0.013 66 R 0.001 0.001 0.004 0.979 0.004 0.013 67 D 0.001 0.001 0.002 0.995 0.002 0.001 68 D 0.001 0.001 0.001 0.998 0.001 0.001 69 V 0.001 0.001 0.001 0.999 0.001 0.001 70 I 0.001 0.001 0.001 0.999 0.001 0.001 71 V 0.001 0.001 0.001 0.999 0.001 0.001 72 M 0.001 0.001 0.001 0.999 0.001 0.001 73 L 0.001 0.001 0.001 0.999 0.001 0.001 74 S 0.001 0.001 0.001 0.998 0.001 0.001 75 A 0.001 0.001 0.001 0.997 0.001 0.001 76 R 0.001 0.001 0.001 0.981 0.003 0.015 77 G 0.001 0.001 0.001 0.005 0.019 0.975 78 V 0.001 0.003 0.001 0.001 0.044 0.949 79 T 0.038 0.016 0.006 0.001 0.134 0.805 80 A 0.059 0.014 0.017 0.003 0.210 0.698 81 P 0.084 0.027 0.034 0.007 0.248 0.600 82 I 0.113 0.030 0.120 0.026 0.279 0.431 83 A 0.116 0.030 0.161 0.071 0.271 0.351 84 A 0.060 0.019 0.270 0.078 0.353 0.220 85 A 0.041 0.013 0.290 0.111 0.334 0.211 86 G 0.050 0.014 0.144 0.066 0.360 0.366 87 Y 0.087 0.015 0.019 0.014 0.239 0.625 88 Q 0.108 0.029 0.006 0.008 0.143 0.706 89 L 0.082 0.036 0.003 0.004 0.149 0.725 90 P 0.077 0.014 0.006 0.006 0.282 0.615 91 M 0.096 0.015 0.010 0.006 0.265 0.608 92 Q 0.131 0.017 0.012 0.015 0.290 0.535 93 V 0.149 0.054 0.016 0.022 0.238 0.520 94 S 0.053 0.028 0.004 0.019 0.212 0.684 95 S 0.013 0.007 0.007 0.180 0.106 0.688 96 A 0.001 0.001 0.003 0.992 0.003 0.003 97 A 0.001 0.001 0.003 0.995 0.001 0.001 98 D 0.001 0.001 0.002 0.996 0.001 0.001 99 A 0.001 0.001 0.001 0.998 0.001 0.001 100 A 0.001 0.001 0.001 0.999 0.001 0.001 101 R 0.001 0.001 0.001 0.999 0.001 0.001 102 L 0.001 0.001 0.001 0.998 0.001 0.001 103 A 0.001 0.001 0.002 0.997 0.001 0.001 104 V 0.001 0.001 0.004 0.993 0.002 0.001 105 R 0.001 0.001 0.008 0.985 0.005 0.002 106 M 0.001 0.001 0.008 0.968 0.013 0.011 107 E 0.001 0.001 0.005 0.970 0.011 0.013 108 N 0.001 0.001 0.004 0.964 0.012 0.018 109 D 0.001 0.001 0.003 0.986 0.005 0.006 110 G 0.001 0.001 0.004 0.982 0.003 0.010 111 A 0.001 0.001 0.003 0.990 0.002 0.003 112 T 0.002 0.001 0.004 0.989 0.003 0.002 113 A 0.001 0.001 0.008 0.986 0.003 0.001 114 W 0.001 0.001 0.011 0.982 0.004 0.001 115 R 0.001 0.001 0.018 0.974 0.005 0.001 116 A 0.001 0.001 0.013 0.981 0.004 0.001 117 V 0.001 0.001 0.008 0.982 0.004 0.005 118 V 0.001 0.001 0.024 0.935 0.015 0.023 119 E 0.002 0.001 0.056 0.880 0.043 0.017 120 H 0.005 0.001 0.047 0.835 0.075 0.037 121 A 0.004 0.007 0.035 0.598 0.154 0.203 122 E 0.003 0.009 0.024 0.333 0.220 0.411 123 T 0.002 0.004 0.006 0.084 0.445 0.458 124 A 0.001 0.002 0.026 0.591 0.257 0.123 125 D 0.001 0.002 0.019 0.794 0.116 0.067 126 D 0.001 0.001 0.007 0.970 0.015 0.006 127 R 0.002 0.001 0.003 0.982 0.005 0.008 128 V 0.003 0.001 0.002 0.990 0.003 0.002 129 F 0.003 0.001 0.003 0.986 0.005 0.002 130 A 0.003 0.001 0.005 0.984 0.005 0.002 131 S 0.003 0.001 0.018 0.964 0.011 0.004 132 T 0.002 0.001 0.028 0.946 0.017 0.006 133 A 0.003 0.001 0.038 0.899 0.025 0.035 134 L 0.002 0.003 0.017 0.842 0.028 0.108 135 T 0.001 0.001 0.008 0.780 0.021 0.188 136 E 0.001 0.001 0.002 0.993 0.002 0.003 137 S 0.001 0.001 0.001 0.996 0.001 0.001 138 A 0.001 0.001 0.001 0.997 0.001 0.001 139 V 0.001 0.001 0.001 0.997 0.001 0.001 140 M 0.001 0.001 0.001 0.997 0.001 0.001 141 A 0.001 0.001 0.001 0.997 0.001 0.001 142 T 0.001 0.001 0.001 0.996 0.001 0.001 143 R 0.001 0.001 0.001 0.997 0.001 0.001 144 W 0.001 0.001 0.002 0.996 0.001 0.001 145 N 0.001 0.001 0.004 0.993 0.002 0.001 146 R 0.001 0.001 0.007 0.984 0.005 0.004 147 V 0.001 0.001 0.009 0.960 0.017 0.013 148 L 0.001 0.001 0.016 0.826 0.066 0.090 149 G 0.003 0.003 0.023 0.146 0.270 0.556 150 A 0.009 0.008 0.034 0.063 0.316 0.569 151 W 0.031 0.017 0.016 0.014 0.301 0.621 152 P 0.045 0.020 0.024 0.014 0.370 0.527 153 I 0.078 0.024 0.054 0.018 0.382 0.445 154 T 0.161 0.024 0.070 0.016 0.337 0.393 155 A 0.248 0.022 0.108 0.015 0.332 0.275 156 A 0.317 0.054 0.058 0.015 0.240 0.315 157 F 0.277 0.052 0.025 0.008 0.297 0.341 158 P 0.182 0.031 0.013 0.004 0.307 0.462 159 G 0.064 0.020 0.009 0.005 0.314 0.589 160 G 0.027 0.022 0.006 0.006 0.253 0.687 161 D 0.015 0.010 0.007 0.011 0.162 0.795 162 E 0.048 0.012 0.052 0.208 0.281 0.399