# List of top-scoring protein chains for T0385.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjxA 157 3.87e-03 a.25.1.1 100837 1bcfA 158 1.55e-02 1bcfA a.25.1.1 16648 1nfvA 179 5.00e-02 a.25.1.1 85642 2fkzA 155 9.02e-02 1sofA 156 9.10e-02 1mfrA 176 1.13e-01 2fha a.25.1.1 16692 1mftA 53 9.24e-01 k.8.1.1 91262 2fzfA 175 1.72e+00 1zpyA 95 1.99e+00 1jgcA 161 2.49e+00 a.25.1.1 66673 2fha 183 2.86e+00 2fha a.25.1.1 16674 1v2dA 381 3.21e+00 c.67.1.1 108281 1uoeA 366 4.04e+00 c.119.1.2 107972 1u6tA 121 4.86e+00 1wryA 121 5.18e+00 1w7lA 422 5.53e+00 c.67.1.1 109226 2choA 716 5.58e+00 1bg7 176 5.65e+00 2fha a.25.1.1 16686 1oi2A 366 6.07e+00 c.119.1.2 103802 1lt1A 50 6.58e+00 k.8.1.1 84690 2fg4A 174 6.59e+00 1jm0A 50 7.31e+00 k.8.1.1 66870 1xz3A 174 7.47e+00 2gydA 170 7.51e+00 1nw1A 429 8.59e+00 d.144.1.8 86286 1aew 174 8.65e+00 2fha a.25.1.1 16676 1ji5A 142 8.99e+00 a.25.1.1 71678 1gntA 553 1.19e+01 e.26.1.1 70290 1e19A 314 1.26e+01 1b7bA c.73.1.1 34967 1lhpA 312 1.36e+01 c.72.1.5 77960 2fjcA 156 1.41e+01 2bg5A 324 1.55e+01 1wdyA 285 1.73e+01 1wwjA 105 1.75e+01 2ct8A 497 2.15e+01 1x6mA 196 2.17e+01 1ec5A 50 2.19e+01 1ec5A k.8.1.1 46421 1sd6A 123 2.20e+01 a.4.5.39 98803 1x38A 602 2.46e+01 1ex1A 605 2.46e+01 1ex1A c.1.8.7,c.23.11.1 29013,31347 1josA 128 2.51e+01 d.52.7.1 84191 2ftcG 145 2.63e+01 1i7qB 193 2.66e+01 1qdlB c.23.16.1 61902 1q50A 561 2.76e+01 c.80.1.2 104535 2gyqA 173 2.92e+01 1y8cA 246 2.98e+01 1r6uA 437 3.12e+01 c.26.1.1 97163 1u7jA 49 3.14e+01 1vlgA 176 3.21e+01 a.25.1.1 108816 210l 163 3.32e+01 1l92 d.2.1.3 36884 1bdfA 235 3.38e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1np2A 436 3.41e+01 c.1.8.4 85944 1ihoA 283 3.65e+01 1ihoA c.26.1.4 62390 1l9aA 87 3.65e+01 d.201.1.1 73710 1lngA 87 3.66e+01 d.201.1.1 74045 1tjoA 182 3.69e+01 1rci 173 3.78e+01 2fha a.25.1.1 16688 1mg8A 78 3.96e+01 d.15.1.1 84958 1gnxA 479 4.05e+01 c.1.8.4 76241 1r5pA 108 4.05e+01 c.47.1.15 97101 1xqaA 113 4.22e+01 1rcd 173 4.24e+01 2fha a.25.1.1 16687 1o0wA 252 4.55e+01 a.149.1.1,d.50.1.1 80751,80752 1w66A 232 4.64e+01 1ug3A 339 4.66e+01 1okrA 123 4.93e+01 a.4.5.39 93269 1vcsA 102 5.02e+01 1o58A 303 5.09e+01 c.79.1.1 92491 2cq8A 110 5.20e+01 1y47A 46 5.24e+01 1ybhA 590 5.40e+01 1t10A 605 5.44e+01 c.80.1.2 106235 1yswA 164 5.63e+01 1gjhA 166 5.66e+01 1maz f.1.4.1 60575 1ex9A 285 5.76e+01 1cvl c.69.1.18 34785 1wznA 252 5.78e+01 1twfK 120 5.97e+01 1wu8A 256 6.21e+01 1lvwA 295 6.35e+01 c.68.1.6 84723 1h2aL 567 6.40e+01 1h2rL e.18.1.1 43299 1g8xA 1010 6.53e+01 1lvk k.1.1.1 46378 1zhvA 134 6.54e+01 1r03A 182 6.75e+01 a.25.1.1 104675 1lp8A 254 6.76e+01 d.165.1.1 91082 1u69A 163 6.76e+01 d.32.1.7 107699 2b67A 204 6.82e+01 1ujoA 144 6.96e+01 a.40.1.1 107900 1vglA 108 7.07e+01 1vb3A 428 7.16e+01 1ybyA 215 7.16e+01 1jglH 218 7.28e+01 b.1.1.1,b.1.1.2 66679,66680 1fntI 232 7.30e+01 2h3bA 494 7.31e+01 1xneA 113 7.50e+01 1nxiA 132 7.95e+01 d.58.47.1 86381 2h3dA 494 7.99e+01 1d6qA 130 8.01e+01 3lzt d.2.1.2 36556 1hf2A 210 8.03e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1ukuA 102 8.20e+01 d.58.5.2 99533 1vm6A 228 8.26e+01 c.2.1.3,d.81.1.3 108876,108877 1bev3 242 8.43e+01 1aym3 1g5mA 166 8.54e+01 1maz f.1.4.1 60286 1x4gA 109 8.59e+01 1rypI 222 8.66e+01 d.153.1.4 41877 2fo7A 136 8.72e+01 1j2vA 102 8.73e+01 d.58.5.2 90804 1yizA 429 8.80e+01