Best Alignments for T0384

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1h6dA/T0384-1h6dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1h6dA/T0384-1h6dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0224e-381.98e-185 c.2.1.3
d.81.1.5
1ydwA/T0384-1ydwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ydwA/T0384-1ydwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5915e-312.18e-149
1rydA/T0384-1rydA-t2k-global-adpstyle1.a2m 1rydA/T0384-1rydA-t2k-global-adpstyle1.al 6.4066e-303.64e-73
1zh8A/T0384-1zh8A-t2k-global-adpstyle1.a2m 1zh8A/T0384-1zh8A-t2k-global-adpstyle1.al 9.0059e-273.64e-73
1gcuA/T0384-1gcuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gcuA/T0384-1gcuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5499e-213.67e-120 1gcuA c.2.1.3
d.81.1.4
2h63A/T0384-2h63A-t2k-global-adpstyle1.a2m 2h63A/T0384-2h63A-t2k-global-adpstyle1.al 9.8618e-123.85e-36
1ff9A/T0384-1ff9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ff9A/T0384-1ff9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4511e-068.64e-58 1ff9A c.2.1.3
d.81.1.2
1b7gO/T0384-1b7gO-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b7gO/T0384-1b7gO-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0571e-051.74e-50 1b7gO c.2.1.3
d.81.1.1
2czcA/T0384-2czcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2czcA/T0384-2czcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2181e-054.66e-47
1f06A/T0384-1f06A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f06A/T0384-1f06A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2655e-052.31e-50 1dapA c.2.1.3
d.81.1.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001