# This file is the result of combining several RDB files, specifically # T0384.t06.dssp-ebghstl.rdb (weight 1.53986) # T0384.t06.stride-ebghtl.rdb (weight 1.24869) # T0384.t06.str2.rdb (weight 1.54758) # T0384.t06.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0384.t06.dssp-ebghstl.rdb # ============================================ # TARGET T0384 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0384.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3670 # # ============================================ # Comments from T0384.t06.stride-ebghtl.rdb # ============================================ # TARGET T0384 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0384.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3670 # # ============================================ # Comments from T0384.t06.str2.rdb # ============================================ # TARGET T0384 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0384.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3670 # # ============================================ # Comments from T0384.t06.alpha.rdb # ============================================ # TARGET T0384 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0384.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3670 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.1223 0.0133 0.8644 2 L 0.3808 0.0065 0.6127 3 K 0.7524 0.0061 0.2415 4 L 0.9211 0.0035 0.0753 5 G 0.9269 0.0042 0.0690 6 V 0.9299 0.0035 0.0666 7 I 0.8298 0.0408 0.1294 8 G 0.4231 0.0254 0.5516 9 T 0.1334 0.1272 0.7394 10 G 0.0606 0.3281 0.6113 11 A 0.0390 0.7339 0.2271 12 I 0.0204 0.8479 0.1316 13 S 0.0106 0.9053 0.0841 14 H 0.0056 0.9436 0.0508 15 H 0.0052 0.9473 0.0475 16 F 0.0050 0.9512 0.0438 17 I 0.0048 0.9563 0.0389 18 E 0.0048 0.9579 0.0374 19 A 0.0049 0.9506 0.0445 20 A 0.0054 0.9243 0.0704 21 H 0.0062 0.8201 0.1737 22 T 0.0132 0.6409 0.3459 23 S 0.0592 0.0714 0.8693 24 G 0.0213 0.0986 0.8801 25 E 0.0502 0.0672 0.8826 26 Y 0.5318 0.0092 0.4590 27 Q 0.8559 0.0055 0.1386 28 L 0.9090 0.0029 0.0881 29 V 0.8824 0.0145 0.1031 30 A 0.9292 0.0034 0.0673 31 I 0.9136 0.0036 0.0828 32 Y 0.8080 0.0102 0.1819 33 S 0.4160 0.0115 0.5726 34 R 0.0889 0.0628 0.8483 35 K 0.0879 0.0408 0.8714 36 L 0.0053 0.8863 0.1084 37 E 0.0049 0.9158 0.0793 38 T 0.0049 0.9275 0.0676 39 A 0.0048 0.9472 0.0481 40 A 0.0047 0.9526 0.0426 41 T 0.0047 0.9514 0.0439 42 F 0.0049 0.9466 0.0485 43 A 0.0048 0.9458 0.0494 44 S 0.0054 0.9192 0.0754 45 R 0.0085 0.8417 0.1498 46 Y 0.0531 0.5918 0.3551 47 Q 0.0280 0.3120 0.6600 48 N 0.0606 0.2344 0.7050 49 I 0.0884 0.2413 0.6703 50 Q 0.1993 0.2774 0.5233 51 L 0.2243 0.3277 0.4480 52 F 0.1649 0.3227 0.5124 53 D 0.0853 0.2767 0.6380 54 Q 0.0880 0.3140 0.5980 55 L 0.0052 0.9330 0.0618 56 E 0.0048 0.9498 0.0454 57 V 0.0049 0.9466 0.0485 58 F 0.0054 0.9297 0.0649 59 F 0.0090 0.8262 0.1649 60 K 0.0109 0.6260 0.3631 61 S 0.0394 0.2400 0.7206 62 S 0.0651 0.0500 0.8849 63 F 0.1232 0.0128 0.8641 64 D 0.1415 0.0418 0.8168 65 L 0.9242 0.0035 0.0724 66 V 0.9337 0.0032 0.0631 67 Y 0.9335 0.0032 0.0633 68 I 0.9136 0.0043 0.0821 69 A 0.6346 0.0104 0.3550 70 S 0.1709 0.0120 0.8170 71 P 0.0732 0.0546 0.8722 72 N 0.0443 0.1827 0.7730 73 S 0.0274 0.5183 0.4543 74 L 0.0269 0.6209 0.3522 75 H 0.0227 0.6973 0.2800 76 F 0.0052 0.9287 0.0661 77 A 0.0047 0.9495 0.0458 78 Q 0.0047 0.9546 0.0406 79 A 0.0047 0.9580 0.0373 80 K 0.0047 0.9603 0.0350 81 A 0.0047 0.9602 0.0351 82 A 0.0047 0.9583 0.0369 83 L 0.0048 0.9535 0.0417 84 S 0.0055 0.9091 0.0854 85 A 0.0430 0.3359 0.6211 86 G 0.0350 0.0183 0.9467 87 K 0.0798 0.0098 0.9104 88 H 0.6333 0.0099 0.3568 89 V 0.8849 0.0072 0.1079 90 I 0.9151 0.0047 0.0802 91 L 0.8760 0.0084 0.1156 92 E 0.6654 0.0200 0.3146 93 K 0.2615 0.0223 0.7162 94 P 0.1651 0.0700 0.7649 95 A 0.1607 0.1402 0.6991 96 V 0.1406 0.1076 0.7519 97 S 0.1086 0.0473 0.8441 98 Q 0.0658 0.0164 0.9178 99 P 0.0053 0.9249 0.0699 100 Q 0.0048 0.9441 0.0512 101 E 0.0049 0.9486 0.0464 102 W 0.0047 0.9577 0.0376 103 F 0.0047 0.9606 0.0348 104 D 0.0047 0.9596 0.0357 105 L 0.0047 0.9599 0.0355 106 I 0.0047 0.9605 0.0348 107 Q 0.0047 0.9590 0.0363 108 T 0.0047 0.9569 0.0384 109 A 0.0047 0.9547 0.0405 110 E 0.0049 0.9415 0.0536 111 K 0.0067 0.8913 0.1020 112 N 0.0466 0.2773 0.6761 113 N 0.0355 0.0182 0.9463 114 C 0.1539 0.0099 0.8363 115 F 0.8575 0.0056 0.1369 116 I 0.8966 0.0114 0.0920 117 F 0.8864 0.0134 0.1002 118 E 0.8271 0.0350 0.1379 119 A 0.6159 0.0642 0.3198 120 A 0.3038 0.1756 0.5206 121 R 0.1694 0.3192 0.5114 122 N 0.1059 0.4058 0.4883 123 Y 0.0748 0.4144 0.5108 124 H 0.0623 0.4349 0.5028 125 E 0.0254 0.6737 0.3009 126 K 0.0071 0.8874 0.1055 127 A 0.0062 0.9079 0.0858 128 F 0.0055 0.9439 0.0506 129 T 0.0052 0.9553 0.0395 130 T 0.0057 0.9525 0.0418 131 I 0.0055 0.9518 0.0427 132 K 0.0052 0.9532 0.0415 133 N 0.0056 0.9472 0.0472 134 F 0.0060 0.9351 0.0589 135 L 0.0088 0.9021 0.0891 136 A 0.0117 0.8096 0.1787 137 D 0.0111 0.6941 0.2948 138 K 0.0379 0.4957 0.4663 139 Q 0.0395 0.2497 0.7107 140 V 0.1475 0.2216 0.6309 141 L 0.2858 0.0750 0.6391 142 G 0.2458 0.0250 0.7293 143 A 0.3614 0.0204 0.6182 144 D 0.5573 0.0531 0.3896 145 F 0.8558 0.0124 0.1319 146 N 0.8939 0.0070 0.0991 147 Y 0.9132 0.0064 0.0804 148 A 0.8983 0.0092 0.0925 149 K 0.8314 0.0232 0.1455 150 Y 0.7281 0.0302 0.2417 151 S 0.4371 0.0616 0.5013 152 S 0.2407 0.0932 0.6661 153 K 0.1392 0.1116 0.7492 154 M 0.1114 0.0986 0.7899 155 P 0.0814 0.2894 0.6291 156 D 0.0854 0.4426 0.4719 157 L 0.0937 0.5029 0.4034 158 L 0.1050 0.4301 0.4649 159 A 0.0678 0.2831 0.6491 160 G 0.0524 0.1197 0.8279 161 Q 0.0821 0.0706 0.8473 162 T 0.0932 0.0480 0.8588 163 P 0.0519 0.2321 0.7159 164 N 0.0822 0.2781 0.6396 165 V 0.1772 0.3083 0.5145 166 F 0.2436 0.1940 0.5625 167 S 0.1729 0.1491 0.6780 168 D 0.0670 0.3815 0.5514 169 R 0.0773 0.3823 0.5404 170 F 0.1239 0.3189 0.5572 171 A 0.1251 0.1899 0.6850 172 G 0.1135 0.1477 0.7388 173 G 0.1689 0.1971 0.6340 174 A 0.2887 0.2902 0.4211 175 L 0.2785 0.4231 0.2985 176 M 0.2323 0.4633 0.3043 177 D 0.1770 0.4770 0.3460 178 L 0.0784 0.4583 0.4633 179 G 0.0855 0.3043 0.6102 180 I 0.0819 0.4810 0.4371 181 Y 0.0645 0.6211 0.3144 182 P 0.0143 0.8929 0.0928 183 L 0.0072 0.9356 0.0572 184 Y 0.0050 0.9517 0.0432 185 A 0.0049 0.9575 0.0376 186 A 0.0047 0.9580 0.0373 187 V 0.0048 0.9542 0.0410 188 R 0.0052 0.9362 0.0587 189 L 0.0112 0.8144 0.1743 190 F 0.0428 0.4545 0.5026 191 G 0.0409 0.0955 0.8636 192 K 0.0789 0.0458 0.8752 193 A 0.1703 0.1045 0.7252 194 N 0.3295 0.1391 0.5314 195 D 0.6248 0.0849 0.2903 196 A 0.7735 0.0416 0.1848 197 T 0.8467 0.0312 0.1221 198 Y 0.8587 0.0253 0.1160 199 H 0.8253 0.0317 0.1430 200 A 0.7715 0.0524 0.1762 201 Q 0.6943 0.0694 0.2363 202 Q 0.6875 0.0681 0.2444 203 L 0.4874 0.0938 0.4188 204 D 0.2666 0.0981 0.6353 205 N 0.1205 0.0958 0.7837 206 S 0.1418 0.0636 0.7947 207 I 0.3265 0.0515 0.6220 208 D 0.4432 0.0460 0.5108 209 L 0.5400 0.0566 0.4034 210 N 0.6312 0.0261 0.3427 211 G 0.7623 0.0094 0.2283 212 D 0.8568 0.0055 0.1377 213 G 0.9144 0.0037 0.0819 214 I 0.9282 0.0035 0.0683 215 L 0.9237 0.0038 0.0725 216 F 0.9113 0.0045 0.0842 217 Y 0.5543 0.0083 0.4374 218 P 0.0508 0.0783 0.8709 219 D 0.0405 0.0349 0.9246 220 Y 0.1738 0.0313 0.7949 221 Q 0.5152 0.0117 0.4731 222 V 0.8853 0.0038 0.1109 223 H 0.9206 0.0035 0.0759 224 I 0.9257 0.0035 0.0708 225 K 0.9146 0.0048 0.0806 226 A 0.8502 0.0088 0.1410 227 G 0.6342 0.0206 0.3453 228 K 0.5055 0.0547 0.4398 229 N 0.5104 0.0585 0.4310 230 I 0.4129 0.0632 0.5239 231 T 0.2396 0.0745 0.6859 232 S 0.1463 0.0722 0.7815 233 N 0.1067 0.0465 0.8468 234 L 0.2204 0.0139 0.7657 235 P 0.4547 0.0072 0.5381 236 C 0.8565 0.0043 0.1392 237 E 0.9196 0.0037 0.0767 238 I 0.9275 0.0032 0.0694 239 Y 0.8883 0.0089 0.1028 240 T 0.7287 0.0078 0.2635 241 T 0.3110 0.0602 0.6288 242 D 0.1217 0.0421 0.8362 243 G 0.3173 0.0269 0.6558 244 T 0.8170 0.0069 0.1761 245 L 0.9111 0.0035 0.0854 246 T 0.9072 0.0044 0.0884 247 L 0.8442 0.0092 0.1466 248 N 0.4945 0.0345 0.4710 249 T 0.3475 0.0505 0.6020 250 I 0.2743 0.2334 0.4924 251 E 0.2651 0.3025 0.4323 252 H 0.3074 0.2853 0.4073 253 I 0.4215 0.1798 0.3987 254 R 0.5063 0.1370 0.3567 255 S 0.6563 0.1104 0.2334 256 A 0.7144 0.1026 0.1830 257 I 0.7662 0.0756 0.1582 258 F 0.7601 0.0554 0.1845 259 T 0.6116 0.0571 0.3313 260 D 0.2985 0.0911 0.6104 261 H 0.1118 0.1247 0.7634 262 Q 0.0891 0.0778 0.8331 263 G 0.1137 0.0585 0.8278 264 N 0.3411 0.0434 0.6156 265 Q 0.6518 0.0340 0.3142 266 V 0.7065 0.0271 0.2664 267 Q 0.6727 0.0270 0.3003 268 L 0.4195 0.0290 0.5514 269 P 0.2806 0.0425 0.6769 270 I 0.1999 0.1645 0.6356 271 Q 0.1451 0.2021 0.6528 272 Q 0.1095 0.2202 0.6703 273 A 0.0770 0.0887 0.8343 274 P 0.0358 0.2851 0.6791 275 H 0.0326 0.3611 0.6063 276 T 0.0354 0.5439 0.4207 277 M 0.0114 0.8314 0.1572 278 T 0.0050 0.9407 0.0543 279 E 0.0047 0.9529 0.0423 280 E 0.0047 0.9567 0.0386 281 V 0.0047 0.9597 0.0356 282 A 0.0047 0.9604 0.0350 283 A 0.0047 0.9577 0.0376 284 F 0.0047 0.9579 0.0375 285 A 0.0047 0.9583 0.0370 286 H 0.0047 0.9535 0.0417 287 M 0.0051 0.9397 0.0552 288 I 0.0067 0.8851 0.1082 289 Q 0.0153 0.6277 0.3570 290 Q 0.0551 0.1708 0.7741 291 P 0.0236 0.1765 0.8000 292 D 0.0456 0.1855 0.7689 293 L 0.0730 0.2975 0.6294 294 N 0.0884 0.2481 0.6636 295 L 0.1222 0.2575 0.6202 296 Y 0.1780 0.2037 0.6184 297 Q 0.2084 0.1798 0.6118 298 T 0.2035 0.1515 0.6449 299 W 0.1341 0.1733 0.6926 300 L 0.0072 0.9162 0.0766 301 Y 0.0060 0.9312 0.0628 302 D 0.0067 0.9189 0.0745 303 A 0.0055 0.9423 0.0523 304 G 0.0047 0.9540 0.0413 305 S 0.0047 0.9571 0.0382 306 V 0.0047 0.9604 0.0349 307 H 0.0047 0.9593 0.0360 308 E 0.0047 0.9607 0.0346 309 L 0.0046 0.9607 0.0347 310 L 0.0046 0.9615 0.0339 311 Y 0.0046 0.9615 0.0338 312 T 0.0046 0.9604 0.0350 313 M 0.0047 0.9576 0.0377 314 R 0.0048 0.9541 0.0412 315 Q 0.0052 0.9392 0.0556 316 T 0.0069 0.9051 0.0880 317 A 0.0300 0.7272 0.2428 318 G 0.0233 0.3396 0.6371 319 I 0.0751 0.2412 0.6837 320 R 0.0955 0.1202 0.7843 321 F 0.1866 0.0739 0.7395 322 E 0.3425 0.0787 0.5789 323 A 0.2654 0.0875 0.6471 324 E 0.1212 0.0527 0.8261 325 K 0.0488 0.0288 0.9224