Best Alignments for T0384

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1h6dA/T0384-1h6dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1h6dA/T0384-1h6dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1894e-385.69e-179 c.2.1.3
d.81.1.5
1ydwA/T0384-1ydwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ydwA/T0384-1ydwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3116e-323.12e-145
1rydA/T0384-1rydA-t04-global-adpstyle1.a2m 1rydA/T0384-1rydA-t04-global-adpstyle1.al 3.5689e-252.47e-74
1zh8A/T0384-1zh8A-t04-global-adpstyle1.a2m 1zh8A/T0384-1zh8A-t04-global-adpstyle1.al 1.1132e-242.47e-74
1gcuA/T0384-1gcuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gcuA/T0384-1gcuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3192e-211.50e-117 1gcuA c.2.1.3
d.81.1.4
1ff9A/T0384-1ff9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ff9A/T0384-1ff9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8914e-133.12e-79 1ff9A c.2.1.3
d.81.1.2
2h63A/T0384-2h63A-t04-global-adpstyle1.a2m 2h63A/T0384-2h63A-t04-global-adpstyle1.al 2.3912e-112.70e-38
1cf2O/T0384-1cf2O-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1cf2O/T0384-1cf2O-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4615e-094.25e-68 1b7gO c.2.1.3
d.81.1.1
1drw/T0384-1drw-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1drw/T0384-1drw-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3297e-092.33e-51 1drw c.2.1.3
d.81.1.3
1f06A/T0384-1f06A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f06A/T0384-1f06A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4525e-093.11e-60 1dapA c.2.1.3
d.81.1.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001