CreatePredAlphaCost pred_alpha2k alpha11 T0383.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0383.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0383.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 20 dry6.5 30 dry8 15 dry12 5 \ phobic_fit 1 \ n_ca_c 10 bad_peptide 20 \ sidechain 5 \ bystroff 8 \ soft_clashes 40 backbone_clashes 2 \ break 150 \ pred_alpha2k 3 \ pred_alpha04 4 \ pred_alpha06 5 \ constraints 10 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 # from decoys/try27-opt2.sheets SheetConstraint E9 S14 I79 S74 hbond Q10 5 SheetConstraint Q15 A20 S74 I69 hbond Q15 5 SheetConstraint P32 H45 I62 N49 hbond E33 10 SheetConstraint N49 M61 D80 V68 hbond Q50 10 # from decoys/try27-opt2.helices HelixConstraint S1 E9 HelixConstraint S88 D119 20 #merged constraint L109.CB I73.CB -10 5.0 8 1 constraint I116.CB F18.CB -10 5.0 8 1