# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1u6zA 513 4.88e-01 2kfnA 605 6.00e-01 1xwl c.55.3.5,e.8.1.1 33682,42975 1d8yA 605 7.13e-01 1xwl c.55.3.5,e.8.1.1 33684,42977 1kfd 605 8.06e-01 1xwl c.55.3.5,e.8.1.1 33694,42987 1dytA 133 9.44e-01 7rsa d.5.1.1 37288 1qmtA 134 1.05e+00 7rsa d.5.1.1 37290 1j93A 353 1.20e+00 c.1.22.1 66454 1klnA 605 1.30e+00 1xwl c.55.3.5,e.8.1.1 33693,42986 1h1hA 134 1.49e+00 d.5.1.1 76468 1qynA 153 1.69e+00 d.33.1.1 96597 1vjpA 394 1.83e+00 c.2.1.3,d.81.1.3 100828,100829 1k3xA 262 1.94e+00 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1mugA 168 2.08e+00 1mugA c.18.1.2 31030 1lxtA 561 3.05e+00 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35432,35433,35434,41309 1vq0A 302 3.43e+00 1xnzA 264 3.65e+00 1c24A 263 4.22e+00 1c24A d.127.1.1 41148 2matA 264 4.27e+00 1c24A d.127.1.1 41146 4matA 278 4.54e+00 1c24A d.127.1.1 41150 1mat 264 4.57e+00 1c24A d.127.1.1 41152 2ggcA 263 5.47e+00 1ijbA 202 5.62e+00 c.62.1.1 71229 1bh9A 45 5.85e+00 1bh9A a.22.1.3 16483 1g0sA 209 5.90e+00 1g0sA d.113.1.1 60187 1auq 208 7.27e+00 1auq c.62.1.1 34137 1oshA 232 7.33e+00 a.123.1.1 93496 1o0xA 262 7.73e+00 d.127.1.1 80755 1fx3B 169 8.01e+00 1fx3B d.33.1.1 38525 1m9sA 605 8.20e+00 b.1.18.15,b.34.11.1,b.34.11.1,b.34.11.1,c.10.2.1 78874,78875,78876,78877,78878 1ttuA 477 8.43e+00 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1wywA 230 8.55e+00 1vhmA 195 9.55e+00 d.110.2.1 100691 1mkmA 249 1.02e+01 a.4.5.33,d.110.2.2 79242,79243 1oakA 196 1.03e+01 1auq c.62.1.1 34138 1fnsA 196 1.03e+01 1auq c.62.1.1 34136 1hyeA 313 1.06e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1qqcA 773 1.07e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1sjqA 105 1.14e+01 d.58.7.1 105660 1tgoA 773 1.32e+01 1tgoA c.55.3.5,e.8.1.1 33721,43010 1sefA 274 1.41e+01 b.82.1.11 105452 1ji8A 111 1.43e+01 d.203.1.1 66733 1w6uA 302 1.68e+01 1xkyA 301 1.72e+01 1mc0A 368 1.73e+01 d.110.2.1,d.110.2.1 78937,78938 1no7A 604 1.89e+01 e.48.1.1 92016 1fl1A 230 1.92e+01 1at3A b.57.1.1 27023 1onwA 390 1.97e+01 b.92.1.7,c.1.9.13 87172,87173 1zpyA 95 1.99e+01 2bl1A 172 2.01e+01 1njkA 156 2.02e+01 d.38.1.1 85818 1yvoA 172 2.10e+01 1h6tA 291 2.12e+01 b.1.18.15,c.10.2.1 65686,65687 1hwxA 501 2.16e+01 1hwyA c.2.1.7,c.58.1.1 30250,33898 1onxA 390 2.20e+01 b.92.1.7,c.1.9.13 87176,87177 1hwyA 501 2.22e+01 1hwyA c.2.1.7,c.58.1.1 30262,33910 1dovA 181 2.28e+01 1dovA a.24.9.1 16627 1tg0A 68 2.32e+01 1dowA 205 2.32e+01 1dovA a.24.9.1 16626 1df3A 162 2.33e+01 1mup b.60.1.1 27134 1ovaA 386 2.43e+01 1ovaA e.1.1.1 42619 1i1iP 681 2.56e+01 1i1iP d.92.1.5 40297 1v61A 132 2.59e+01 b.55.1.1 108389 1fcyA 236 2.61e+01 2lbd a.123.1.1 19282 1mkyA 439 2.73e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2bskB 90 2.73e+01 1gz6A 319 2.77e+01 c.2.1.2 76410 4lbd 267 2.78e+01 2lbd a.123.1.1 19289 2lbd 267 2.78e+01 2lbd a.123.1.1 19287 1wdxA 69 2.79e+01 1phk 298 2.87e+01 1cdkA d.144.1.7 41635 1vs0A 310 3.22e+01 1fvrA 327 3.23e+01 d.144.1.7 60047 1nmtA 392 3.23e+01 1nmtA d.108.1.2,d.108.1.2 40823,40824 1sviA 195 3.35e+01 c.37.1.8 106048 1zndA 174 3.49e+01 1jv4A 162 3.53e+01 b.60.1.1 67343 1wgeA 83 3.62e+01 1od2A 805 3.66e+01 c.14.1.4,c.14.1.4 86821,86822 1eujA 166 3.72e+01 1eujA b.40.4.4 25316 1zwxA 301 3.73e+01 1o5kA 306 3.76e+01 c.1.10.1 92504 1pk5A 248 3.79e+01 a.123.1.1 88139 1xrtA 467 3.80e+01 1umgA 362 3.82e+01 d.280.1.1 107956 1uekA 275 3.85e+01 d.14.1.5,d.58.26.5 88483,88484 1t01B 24 3.88e+01 1b6q 63 3.95e+01 1nkd a.30.1.1 16977 1zy4A 303 3.99e+01 1d6aB 262 3.99e+01 1qi7A d.165.1.1 42198 1ym5A 300 3.99e+01 2b5gA 171 4.01e+01 1egdA 396 4.03e+01 3mdeA a.29.3.1,e.6.1.1 16596,42857 1wtaA 275 4.05e+01 1qciA 262 4.08e+01 1qi7A d.165.1.1 42201 1jenB 67 4.09e+01 1jenB d.156.1.1 42029 1ht9A 76 4.14e+01 4icb a.39.1.1 61252 1xoyA 161 4.16e+01 1qy1A 174 4.22e+01 b.60.1.1 96568 1ia9A 280 4.26e+01 1ia9A d.144.1.5 62113 1oj4A 283 4.27e+01 d.14.1.5,d.58.26.5 93083,93084 3icb 75 4.29e+01 4icb a.39.1.1 17147 1sauA 115 4.32e+01 4icb 76 4.45e+01 4icb a.39.1.1 17145 2a3qA 170 4.60e+01 1d4fA 431 4.65e+01 1b3rA c.2.1.4,c.23.12.3 30110,31370 1ozjA 144 4.71e+01 d.164.1.1 93846 1azqA 66 4.73e+01 1azpA b.34.13.1 37469 1lybA 97 4.73e+01 1smrA b.50.1.2 26857 2gf6A 135 4.76e+01 1f3lA 321 4.81e+01 1g6q2 c.66.1.6 59630 1pjhA 280 4.85e+01 c.14.1.3 94761 1hnuA 280 4.88e+01 1hnoA c.14.1.3 61096 1hnoA 280 4.90e+01 1hnoA c.14.1.3 61095 1azpA 66 4.90e+01 1azpA b.34.13.1 37467 1x7yA 400 4.91e+01 1f2tA 149 5.00e+01 1f2tA c.37.1.12 32373 2g8mA 264 5.02e+01 1lshA 1056 5.20e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1r8mE 203 5.20e+01 a.118.3.1 97242 1evfA 264 5.26e+01 1bkpA d.117.1.1 40932 1i40A 175 5.27e+01 b.40.5.1 66024 1kopA 223 5.27e+01 2cba b.74.1.1 27966 2a1dD 329 5.32e+01 1qqqA 264 5.38e+01 1bkpA d.117.1.1 40931 1mznA 240 5.45e+01 a.123.1.1 79704 1uhgA 385 5.48e+01 e.1.1.1 88491 1j1qA 261 5.49e+01 d.165.1.1 90768 2g38B 198 5.50e+01 1i06A 180 5.57e+01 1mup b.60.1.1 27131 1a3yA 149 5.61e+01 1obpA b.60.1.1 27110 2gz4A 207 5.76e+01 2gx9A 129 5.76e+01 2gi3A 476 5.84e+01 1z54A 132 5.86e+01 1b7eA 420 5.87e+01 1b7eA c.55.3.4 33680 2h58A 330 5.96e+01 1f3iA 481 6.01e+01 1b7eA 1a3k 137 6.02e+01 1a3k b.29.1.3 24218 2g8oA 264 6.08e+01 1fit 147 6.11e+01 1fit d.13.1.1 37499 2d4rA 147 6.12e+01 2f6hX 419 6.15e+01 1qxyA 252 6.22e+01 d.127.1.1 96565 1b6fA 159 6.22e+01 1bv1 d.129.3.1 41316 1b26A 416 6.23e+01 1hwyA c.2.1.7,c.58.1.1 30232,33880 1gikA 261 6.27e+01 d.165.1.1 90513 1i05A 180 6.29e+01 1mup b.60.1.1 27130 1ee8A 266 6.35e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2fhi 147 6.35e+01 1fit d.13.1.1 37505 1lay 256 6.48e+01 1lay b.57.1.1 27014 1bdmB 327 6.48e+01 1bmdA c.2.1.5,d.162.1.1 30138,42105 1bmdA 327 6.56e+01 1bmdA c.2.1.5,d.162.1.1 30139,42106 2bfdA 400 6.58e+01 1y7tA 327 6.63e+01 1uujA 88 6.65e+01 a.221.1.1 108046 1q8iA 783 6.65e+01 c.55.3.5,e.8.1.1 96208,96209 1bdmA 327 6.71e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 1bu1A 57 6.72e+01 1bbzA b.34.2.1 24499 1mup 166 6.73e+01 1mup b.60.1.1 27133 1mvcA 240 6.84e+01 a.123.1.1 79499 1axwA 265 6.85e+01 1bkpA d.117.1.1 40938 1x13A 401 6.93e+01 1ta0A 197 6.97e+01 c.108.1.16 106729 1zxq 192 7.02e+01 1zxq b.1.1.3,b.1.1.4 21657,21693 1gy7A 125 7.07e+01 d.17.4.2 70738 1t82A 155 7.14e+01 d.38.1.5 106639 2apjA 260 7.15e+01 1do6A 124 7.30e+01 1do6A b.1.13.1 22361 1v1rA 400 7.41e+01 c.36.1.11 108272 1ipwA 175 7.44e+01 2prd b.40.5.1 25427 1aiqA 264 7.54e+01 1bkpA d.117.1.1 40967 1i39A 225 7.54e+01 1ekeA c.55.3.1 61585 1phm 310 7.58e+01 1phm b.121.1.2,b.121.1.2 59015,59016 1xgsA 295 7.62e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1fafA 79 7.68e+01 1fafA a.2.3.1 15700 1fi8A 228 7.69e+01 5ptp b.47.1.2 26374 1ts9A 102 7.70e+01 1gtmA 419 7.71e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1vl4A 447 7.75e+01 d.283.1.1 108718 1vp4A 425 7.82e+01 1pzgA 331 7.97e+01 c.2.1.5,d.162.1.1 95425,95426 1souA 194 7.99e+01 c.124.1.6 105858 1xwsA 313 8.00e+01 1m1lA 236 8.10e+01 d.260.1.1 91166 1b1yA 500 8.11e+01 1byb c.1.8.1 28796 1w1kA 560 8.16e+01 d.58.32.1,d.145.1.1 109059,109060 1ehiA 377 8.17e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1h2xA 710 8.23e+01 b.69.7.1,c.69.1.4 76598,76599 1g5yA 238 8.29e+01 1lbd a.123.1.1 60294 1y7bA 542 8.31e+01 1caj 260 8.34e+01 2cba b.74.1.1 27841 1w36C 1122 8.35e+01 1vlrA 350 8.36e+01 d.13.1.3,d.246.1.1 108860,108861 1ysqA 193 8.44e+01 1nozA 388 8.46e+01 1clqA c.55.3.5 33715 1ron 37 8.49e+01 1ron j.6.1.1 46090 1bccD 241 8.51e+01 1be3D a.3.1.3,f.23.11.1 15959,43698 1dqiA 124 8.52e+01 1do6A b.1.13.1 22357 1s1hM 132 8.66e+01 i.1.1.1 105165 2tscA 264 8.71e+01 1bkpA d.117.1.1 40952 1bpr 191 8.77e+01 1dkzA b.130.1.1 43319 1ewfA 456 8.83e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1e69B 322 8.87e+01 1e69B c.37.1.12 32377 1t8sA 484 8.93e+01 c.56.2.1 106679