# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qynA 153 1.40e-01 d.33.1.1 96597 1u6zA 513 1.92e-01 1mugA 168 3.28e-01 1mugA c.18.1.2 31030 1j93A 353 4.90e-01 c.1.22.1 66454 2ggcA 263 6.15e-01 1xnzA 264 6.73e-01 1vq0A 302 1.00e+00 1ttuA 477 1.02e+00 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1ukfA 188 1.35e+00 d.3.1.10 99488 1f2tA 149 2.33e+00 1f2tA c.37.1.12 32373 1fl1A 230 2.95e+00 1at3A b.57.1.1 27023 3pmgA 561 2.99e+00 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1oshA 232 3.31e+00 a.123.1.1 93496 1wywA 230 3.41e+00 1kopA 223 3.51e+00 2cba b.74.1.1 27966 1o0xA 262 3.78e+00 d.127.1.1 80755 1x13A 401 5.06e+00 1bh9A 45 5.76e+00 1bh9A a.22.1.3 16483 1onwA 390 5.80e+00 b.92.1.7,c.1.9.13 87172,87173 1ijbA 202 6.08e+00 c.62.1.1 71229 1yvoA 172 6.54e+00 1ia9A 280 7.28e+00 1ia9A d.144.1.5 62113 1dytA 133 7.38e+00 7rsa d.5.1.1 37288 1qysA 106 7.50e+00 k.41.1.1 96603 1xrtA 467 8.45e+00 1fit 147 8.54e+00 1fit d.13.1.1 37499 2akoA 251 9.19e+00 1m98A 317 9.78e+00 a.175.1.1,d.17.4.6 78866,78867 1hyeA 313 9.97e+00 2cmd c.2.1.5,d.162.1.1 61400,61401 1dzkA 157 1.17e+01 1obpA b.60.1.1 27096 2be3A 226 1.18e+01 1gtmA 419 1.24e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1w6uA 302 1.28e+01 1fcyA 236 1.38e+01 2lbd a.123.1.1 19282 1zpyA 95 1.38e+01 1mkmA 249 1.42e+01 a.4.5.33,d.110.2.2 79242,79243 1sefA 274 1.44e+01 b.82.1.11 105452 1xkyA 301 1.45e+01 1erjA 393 1.49e+01 1erjA b.69.4.1 27660 1h6tA 291 1.51e+01 b.1.18.15,c.10.2.1 65686,65687 1l7dA 384 1.62e+01 c.2.1.4,c.23.12.2 77774,77775 1bdmA 327 1.63e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 1sviA 195 1.65e+01 c.37.1.8 106048 1wucA 250 1.70e+01 1vjpA 394 1.70e+01 c.2.1.3,d.81.1.3 100828,100829 1qxyA 252 1.70e+01 d.127.1.1 96565 1voqa 90 1.75e+01 1musA 477 1.84e+01 c.55.3.4 79494 1w2xA 758 1.88e+01 c.14.1.4,c.14.1.4 109134,109135 2h4uA 145 1.88e+01 2b8eA 273 1.88e+01 1whsB 153 1.90e+01 1whtB 1bdb 277 1.92e+01 1bdb c.2.1.2 29874 1r31A 428 2.01e+01 d.58.20.1,d.179.1.1 96897,96898 1yqtA 538 2.02e+01 1i12A 160 2.10e+01 1i21A d.108.1.1 61515 1uujA 88 2.10e+01 a.221.1.1 108046 1e8gA 560 2.11e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1z54A 132 2.13e+01 2gf6A 135 2.28e+01 1uyrA 737 2.30e+01 c.14.1.4,c.14.1.4 100188,100189 1qf5A 431 2.30e+01 1adeA c.37.1.10 32212 1e9gA 286 2.33e+01 1wgjA b.40.5.1 59393 1snzA 344 2.34e+01 b.30.5.4 98930 1g0sA 209 2.35e+01 1g0sA d.113.1.1 60187 1sauA 115 2.45e+01 1hkhA 279 2.52e+01 c.69.1.12 90628 1p7tA 731 2.52e+01 c.1.13.1 94319 1dowA 205 2.59e+01 1dovA a.24.9.1 16626 1vp4A 425 2.59e+01 1z5yE 149 2.65e+01 1j1qA 261 2.81e+01 d.165.1.1 90768 1umgA 362 2.84e+01 d.280.1.1 107956 1r3dA 264 2.87e+01 1xyiA 66 2.89e+01 1oj4A 283 2.97e+01 d.14.1.5,d.58.26.5 93083,93084 1q0pA 223 2.99e+01 c.62.1.1 95507 1thqA 170 3.00e+01 f.4.1.2 106920 1p2zA 968 3.03e+01 b.121.2.2,b.121.2.2 93962,93963 1pjhA 280 3.07e+01 c.14.1.3 94761 1iicA 422 3.09e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 2bmoB 194 3.18e+01 1fvkA 189 3.20e+01 1fvkA c.47.1.13 90351 1unqA 125 3.25e+01 b.55.1.1 107968 1mkyA 439 3.30e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2gi3A 476 3.31e+01 1o59A 355 3.32e+01 b.18.1.22,b.18.1.22 92495,92496 1ako 268 3.33e+01 1ako d.151.1.1 41779 1q8iA 783 3.38e+01 c.55.3.5,e.8.1.1 96208,96209 1rb9 53 3.48e+01 1rb9 g.41.5.1 45214 1tzyB 126 3.49e+01 a.22.1.1 107531 1vrmA 325 3.55e+01 1w0hA 204 3.58e+01 2gx9A 129 3.63e+01 2b7kA 200 3.64e+01 1p30A 952 3.70e+01 b.121.2.2,b.121.2.2 93964,93965 1q6zA 528 3.86e+01 1zndA 174 3.87e+01 2giyA 191 3.88e+01 1ehiA 377 3.96e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1x8qA 184 3.96e+01 2d9rA 104 3.98e+01 1uekA 275 3.99e+01 d.14.1.5,d.58.26.5 88483,88484 1jfmA 174 4.05e+01 d.19.1.1 66640 1kjlA 146 4.08e+01 1iro 54 4.10e+01 1rb9 g.41.5.1 45223 1jp4A 308 4.21e+01 1jp4A e.7.1.1 63223 1dkzA 219 4.21e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 2apjA 260 4.24e+01 1t01B 24 4.29e+01 2a40B 260 4.33e+01 2a3qA 170 4.38e+01 2g38B 198 4.40e+01 1u6rA 380 4.47e+01 1qy1A 174 4.49e+01 b.60.1.1 96568 1t1jA 125 4.53e+01 c.137.1.1 106249 2bfdA 400 4.67e+01 1lshA 1056 4.86e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1avbA 226 4.87e+01 1led b.29.1.1 24158 1i7nA 309 4.97e+01 c.30.1.5,d.142.1.3 83681,83682 1sglA 209 5.00e+01 d.124.1.1 105536 1nuyA 337 5.03e+01 e.7.1.1 86213 1b35C 282 5.18e+01 1b35C 1yn3A 98 5.19e+01 1ulyA 192 5.22e+01 1y10A 407 5.29e+01 1vs0A 310 5.40e+01 1vlrA 350 5.40e+01 d.13.1.3,d.246.1.1 108860,108861 1sdjA 310 5.49e+01 d.21.1.2,d.21.1.2 98807,98808 1x7yA 400 5.49e+01 2b1xA 470 5.55e+01 1h5qA 265 5.56e+01 1cydA c.2.1.2 60643 1r8mE 203 5.58e+01 a.118.3.1 97242 1neu 124 5.68e+01 1neu b.1.1.1 19704 1qmeA 702 5.68e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1ivyA 452 5.76e+01 1ivyA c.69.1.5 34654 2bskB 90 5.82e+01 1ohzB 60 5.86e+01 a.139.1.1 93044 2f9zC 159 5.89e+01 1wckA 220 5.92e+01 2b3hA 329 6.05e+01 1wvfA 520 6.07e+01 1ve2A 235 6.16e+01 1a8s 273 6.21e+01 1brt c.69.1.12 34710 1hy7A 173 6.31e+01 d.92.1.11 65957 1lf7A 182 6.33e+01 b.60.1.1 73878 1hw7A 255 6.37e+01 1i7fA d.193.1.1 61297 1o5kA 306 6.39e+01 c.1.10.1 92504 1q77A 138 6.42e+01 c.26.2.4 96023 1r2zA 274 6.43e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1wtaA 275 6.52e+01 2gpiA 91 6.57e+01 1svvA 359 6.75e+01 c.67.1.1 106054 1dqiA 124 6.77e+01 1do6A b.1.13.1 22357 1wduA 245 6.77e+01 d.151.1.1 109286 2aq8A 269 6.79e+01 1i39A 225 6.85e+01 1ekeA c.55.3.1 61585 2b5gA 171 6.88e+01 1un7A 400 6.92e+01 b.92.1.5,c.1.9.10 99657,99658 1rp3B 88 6.97e+01 a.137.11.1 97681 1fm4A 159 7.05e+01 1bv1 d.129.3.1 76186 2fhzA 109 7.06e+01 1wpoA 256 7.07e+01 1lay b.57.1.1 27012 1qyaA 307 7.07e+01 d.21.1.2,d.21.1.2 104653,104654 1qh4A 380 7.09e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1stzA 338 7.09e+01 a.4.5.51,d.110.2.3 106009,106010 2gz4A 207 7.22e+01 1xgsA 295 7.23e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1xfkA 336 7.33e+01 1lba 146 7.34e+01 1lba d.118.1.1 41062 1fljA 260 7.35e+01 2cba b.74.1.1 27954 1s69A 124 7.42e+01 a.1.1.1 105305 1o6vA 466 7.47e+01 b.1.18.15,c.10.2.1 81099,81100 1xesA 413 7.49e+01 2bwvA 440 7.52e+01 1mw7A 240 7.54e+01 e.39.1.1 79557 1nhcA 336 7.64e+01 b.80.1.3 91879 1ym5A 300 7.64e+01 1ee8A 266 7.68e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1guqA 348 7.74e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 1tvfA 369 7.76e+01 b.105.1.2,e.3.1.1 107358,107359 1z70X 311 7.87e+01 1mvcA 240 7.91e+01 a.123.1.1 79499 1yllA 200 7.93e+01 1tzfA 259 7.95e+01 c.68.1.13 107476 2bhvA 246 8.01e+01 1li4A 432 8.02e+01 c.2.1.4,c.23.12.3 84616,84617 1r8sE 203 8.05e+01 a.118.3.1 97248 1x31D 99 8.16e+01 2g09A 297 8.33e+01 1jjtA 228 8.68e+01 1a7tA d.157.1.1 63139 1z94A 147 8.70e+01 2bv5A 282 8.85e+01 1ts9A 102 8.89e+01 2c6cA 707 8.98e+01 1h6lA 353 8.99e+01 b.68.3.1 60687 1qeyA 31 8.99e+01 1qeyA h.2.1.1 45666