# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ijbA 202 4.52e-01 c.62.1.1 71229 1yqdA 366 6.62e-01 1mugA 168 8.03e-01 1mugA c.18.1.2 31030 1k3xA 262 1.18e+00 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1ysqA 193 1.20e+00 1oshA 232 1.21e+00 a.123.1.1 93496 1j93A 353 1.65e+00 c.1.22.1 66454 1k2eA 156 2.09e+00 d.113.1.1 72010 1bh9A 45 2.39e+00 1bh9A a.22.1.3 16483 1qynA 153 2.67e+00 d.33.1.1 96597 1xnzA 264 3.38e+00 1fit 147 4.99e+00 1fit d.13.1.1 37499 1oj4A 283 5.10e+00 d.14.1.5,d.58.26.5 93083,93084 1u6zA 513 5.14e+00 2gi3A 476 5.45e+00 1vq0A 302 5.70e+00 1fcyA 236 5.94e+00 2lbd a.123.1.1 19282 2ggcA 263 6.27e+00 1z54A 132 6.64e+00 1o0xA 262 7.55e+00 d.127.1.1 80755 1vjpA 394 8.33e+00 c.2.1.3,d.81.1.3 100828,100829 1q77A 138 8.92e+00 c.26.2.4 96023 1yvoA 172 9.03e+00 1uyjA 296 9.69e+00 f.8.1.2 108143 1e8gA 560 9.97e+00 1qltA d.58.32.1,d.145.1.1 39455,41718 1s14A 194 1.00e+01 d.122.1.2 98329 2d5cA 263 1.05e+01 1mkmA 249 1.07e+01 a.4.5.33,d.110.2.2 79242,79243 1lssA 140 1.07e+01 c.2.1.9 74246 1no7A 604 1.10e+01 e.48.1.1 92016 2gf6A 135 1.17e+01 1wywA 230 1.20e+01 2bfdA 400 1.23e+01 1ryp2 233 1.27e+01 1ryp2 2es7A 142 1.31e+01 1ukfA 188 1.34e+01 d.3.1.10 99488 1jjtA 228 1.37e+01 1a7tA d.157.1.1 63139 1x7yA 400 1.39e+01 2b8eA 273 1.41e+01 1bia 321 1.54e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1khbA 625 1.60e+01 c.91.1.1,c.109.1.1 68606,68607 1erjA 393 1.62e+01 1erjA b.69.4.1 27660 2c3vA 102 1.73e+01 1gtmA 419 1.73e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1qeyA 31 1.77e+01 1qeyA h.2.1.1 45666 1vrmA 325 1.77e+01 1jk7A 323 1.80e+01 1auiA d.159.1.3 63144 1oqjA 97 1.80e+01 d.217.1.1 93417 1s7kA 182 1.89e+01 2fxqA 264 1.92e+01 2g38B 198 1.96e+01 2h4uA 145 2.02e+01 1jfmA 174 2.03e+01 d.19.1.1 66640 1fs7A 485 2.08e+01 1qdbA a.138.1.3 19691 1zuhA 168 2.24e+01 2ch4A 320 2.26e+01 1t1jA 125 2.30e+01 c.137.1.1 106249 1wkoA 180 2.31e+01 1bdmA 327 2.35e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 2bwvA 440 2.41e+01 2g09A 297 2.43e+01 1t01B 24 2.45e+01 1eteA 134 2.45e+01 1eteA a.26.1.2 16869 1w6uA 302 2.50e+01 2bhvA 246 2.52e+01 1xvsA 126 2.52e+01 1v7rA 186 2.53e+01 c.51.4.1 100482 1i58A 189 2.54e+01 1b3qA d.122.1.3 61773 1ul4A 94 2.57e+01 g.72.1.1 99538 1vqzA 341 2.58e+01 1f2tA 149 2.61e+01 1f2tA c.37.1.12 32373 1dowA 205 2.68e+01 1dovA a.24.9.1 16626 1i8fA 81 2.81e+01 1i8fA b.38.1.1 61959 1vf6A 83 2.82e+01 a.194.1.1 100600 1g87A 614 2.86e+01 a.102.1.2,b.2.2.2 83275,83276 1vqoE 178 2.87e+01 2gz4A 207 2.92e+01 1sdjA 310 2.95e+01 d.21.1.2,d.21.1.2 98807,98808 1p1jA 533 2.99e+01 c.2.1.3,d.81.1.3 87687,87688 1gyxA 76 3.00e+01 d.80.1.1 76387 1vjnA 220 3.00e+01 d.157.1.4 100825 1v8dA 235 3.01e+01 c.140.1.1 108425 2fkbA 180 3.06e+01 1k0iA 394 3.08e+01 c.3.1.2,d.16.1.2 67942,67943 1vb0A 61 3.09e+01 1odkA 235 3.17e+01 c.56.2.1 86863 1yq2A 1024 3.22e+01 1iicA 422 3.23e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1wpoA 256 3.30e+01 1lay b.57.1.1 27012 1h7sA 365 3.32e+01 d.14.1.3,d.122.1.2 65705,65706 2c6cA 707 3.34e+01 2fs3A 282 3.44e+01 2bh8A 101 3.45e+01 1kopA 223 3.45e+01 2cba b.74.1.1 27966 2ethA 154 3.48e+01 1fl1A 230 3.48e+01 1at3A b.57.1.1 27023 1uujA 88 3.53e+01 a.221.1.1 108046 2d8aA 348 3.54e+01 1dysA 348 3.54e+01 1bvwA c.6.1.1 30669 1gpuA 680 3.65e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1ykjA 394 3.66e+01 1msk 331 3.68e+01 1msk d.173.1.1 42495 2akoA 251 3.70e+01 1zklA 353 3.70e+01 1imjA 210 3.70e+01 c.69.1.23 71246 1y7wA 291 3.72e+01 1ex2A 189 3.81e+01 1ex2A c.51.4.2 33225 2ltnA 181 3.82e+01 1led b.29.1.1 24024 1wjtA 103 3.91e+01 1sx5A 244 3.94e+01 c.52.1.2 99023 1tzyB 126 3.97e+01 a.22.1.1 107531 1xm8A 254 3.99e+01 1u9iA 519 4.02e+01 1qysA 106 4.04e+01 k.41.1.1 96603 1lf7A 182 4.12e+01 b.60.1.1 73878 1lst 239 4.21e+01 1lst c.94.1.1 35755 2fa8A 105 4.22e+01 1h6tA 291 4.25e+01 b.1.18.15,c.10.2.1 65686,65687 1dqpA 230 4.28e+01 1dqnA c.61.1.1 34069 1pc3A 350 4.42e+01 c.94.1.1 104102 1m4jA 142 4.52e+01 d.109.1.2 78602 1mkyA 439 4.54e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1uuqA 440 4.63e+01 c.1.8.3 100015 2f1lA 187 4.63e+01 1x0tA 120 4.68e+01 1a5t 334 4.71e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1s0yA 76 4.78e+01 d.80.1.1 98314 1x31D 99 4.81e+01 1u8vA 490 4.87e+01 1vddA 228 4.89e+01 e.49.1.1 108519 1oe1A 336 4.94e+01 b.6.1.3,b.6.1.3 86891,86892 1fr2B 134 4.94e+01 d.4.1.1 83257 1s69A 124 4.96e+01 a.1.1.1 105305 2f51A 118 4.96e+01 1kq1A 77 5.03e+01 b.38.1.2 72848 1jy2O 56 5.05e+01 h.1.8.1 67441 1ery 39 5.07e+01 1ery a.10.1.1 16364 1xmbA 418 5.07e+01 1fvkA 189 5.11e+01 1fvkA c.47.1.13 90351 1vp4A 425 5.17e+01 2exrA 524 5.23e+01 1vf8A 377 5.25e+01 1zpyA 95 5.28e+01 1mjhA 162 5.29e+01 1mjhA c.26.2.4 31639 1s0yB 71 5.29e+01 d.80.1.1 98315 2bjfA 329 5.30e+01 1eybA 471 5.34e+01 1ey2A b.82.1.4 28115 2f6rA 281 5.35e+01 1hpcA 131 5.39e+01 1htp b.84.1.1 28221 1u1iA 392 5.49e+01 c.2.1.3,d.81.1.3 107582,107583 3daaA 277 5.50e+01 1daaA e.17.1.1 43272 1o6zA 303 5.59e+01 c.2.1.5,d.162.1.1 81107,81108 1r2zA 274 5.59e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1tzpA 255 5.82e+01 d.65.1.3 107520 1bdb 277 5.90e+01 1bdb c.2.1.2 29874 1rg9A 383 6.04e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1ee8A 266 6.07e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1g0cA 364 6.16e+01 7a3hA c.1.8.3 60165 1nytA 271 6.21e+01 c.2.1.7,c.58.1.5 86417,86418 1mkaA 171 6.22e+01 1mkaA d.38.1.2 38543 1vr4A 103 6.27e+01 1m40A 263 6.29e+01 e.3.1.1 74437 1tf1A 198 6.38e+01 d.110.2.2 106826 1hdkA 141 6.42e+01 b.29.1.3 65807 2h2bA 107 6.47e+01 1s9jA 341 6.49e+01 1z8uA 102 6.53e+01 1ozjA 144 6.58e+01 d.164.1.1 93846 1n67A 359 6.62e+01 b.2.3.4,b.2.3.4 85354,85355 1h5qA 265 6.64e+01 1cydA c.2.1.2 60643 1pv5A 264 6.64e+01 d.251.1.1 95150 1u9tA 354 6.67e+01 1ak0 270 6.71e+01 1ak0 a.124.1.2 19345 1sviA 195 6.72e+01 c.37.1.8 106048 1qmeA 702 6.76e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1zjcA 418 6.85e+01 1qw2A 102 6.86e+01 d.249.1.1 96456 1xauA 122 6.86e+01 1kjvB 100 6.90e+01 b.1.1.2 77423 1lk2B 99 6.98e+01 b.1.1.2 91058 2a15A 139 7.03e+01 1xkyA 301 7.12e+01 2g30A 258 7.13e+01 1owfA 99 7.17e+01 a.55.1.1 87487 1dzkA 157 7.19e+01 1obpA b.60.1.1 27096 1q0eA 152 7.19e+01 b.1.8.1 95504 2b3hA 329 7.25e+01 1ttwA 138 7.31e+01 d.198.1.1 107308 2aqlA 173 7.33e+01 1g5aA 628 7.33e+01 b.71.1.1,c.1.8.1 65152,65153 1vhcA 224 7.41e+01 c.1.10.1 100661 1olrA 224 7.55e+01 b.29.1.11 93330 1fm4A 159 7.57e+01 1bv1 d.129.3.1 76186 1z5yE 149 7.58e+01 1g0sA 209 7.59e+01 1g0sA d.113.1.1 60187 1em2A 229 7.66e+01 1em2A d.129.3.2 41321 1q60A 99 7.75e+01 2ccyA 128 7.80e+01 2ccyA a.24.3.2 16544 1sqgA 429 7.84e+01 a.79.1.3,c.66.1.38 105912,105913 2a3qA 170 7.89e+01 1esc 306 7.89e+01 1esc c.23.10.1 31334 1y0kA 209 8.05e+01 1a8s 273 8.09e+01 1brt c.69.1.12 34710 1ig5A 75 8.28e+01 4icb a.39.1.1 62363 1vprA 374 8.29e+01 1jndA 420 8.32e+01 c.1.8.5,d.26.3.1 71757,71758 1vr5A 547 8.38e+01 1vhh 162 8.43e+01 1vhh d.65.1.2 39550 1zndA 174 8.43e+01 1s28A 132 8.47e+01 d.198.1.1 105223 1dfwA 25 8.53e+01 j.35.1.1 46255 3pmgA 561 8.63e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2d9rA 104 8.65e+01 1qlmA 316 8.66e+01 1qlmA d.147.1.1 41765 1tc5A 194 8.85e+01 c.110.1.1 106752 1h21A 247 8.93e+01 a.138.1.3 76510 1itxA 419 8.98e+01 c.1.8.5,d.26.3.1 71425,71426 1uxtA 501 9.00e+01 c.82.1.1 108125