# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qynA 153 6.24e-01 d.33.1.1 96597 1wt4A 73 2.07e+00 1ia9A 280 3.06e+00 1ia9A d.144.1.5 62113 1f2tA 149 4.62e+00 1f2tA c.37.1.12 32373 1sra 151 5.33e+00 1sra a.39.1.3 17190 1ud0A 113 5.49e+00 a.8.4.1 99198 1vp4A 425 8.93e+00 1tfr 305 9.15e+00 1tfr a.60.7.1,c.120.1.2 18081,33351 1ttuA 477 9.92e+00 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1o60A 292 1.03e+01 c.1.10.4 92532 1vqoE 178 1.06e+01 2giyA 191 1.14e+01 1jhgA 101 1.36e+01 1jhgA a.4.12.1 19009 2gf6A 135 1.40e+01 1y9wA 140 1.46e+01 1ux5A 411 1.54e+01 a.207.1.1 100144 1dytA 133 1.58e+01 7rsa d.5.1.1 37288 1qysA 106 1.65e+01 k.41.1.1 96603 1xs0A 136 1.95e+01 2spcA 107 1.99e+01 2spcA a.7.1.1 16311 1ryp1 222 2.01e+01 1ryp1 1otfA 62 2.16e+01 1otfA d.80.1.1 39820 1fmb 104 2.24e+01 1fmb b.50.1.1 26777 1xjdA 345 2.31e+01 1vhrA 184 2.36e+01 1vhrA c.45.1.1 32651 1scfA 273 2.40e+01 1exzA a.26.1.2 16873 1gpqA 135 2.48e+01 d.233.1.1 83295 1u5pA 216 2.52e+01 1xvsA 126 2.63e+01 1bh9A 45 2.67e+01 1bh9A a.22.1.3 16483 1mugA 168 2.69e+01 1mugA c.18.1.2 31030 2bt6A 108 2.85e+01 1z0jB 59 2.97e+01 2ltnA 181 3.16e+01 1led b.29.1.1 24024 2gf4A 100 3.26e+01 1h6hA 143 3.32e+01 d.189.1.1 65681 1zchA 255 3.55e+01 1rb9 53 3.56e+01 1rb9 g.41.5.1 45214 1dugA 234 3.61e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 2gtsA 86 3.61e+01 1nnwA 252 3.89e+01 d.159.1.5 80674 1yw4A 341 4.09e+01 1ul4A 94 4.27e+01 g.72.1.1 99538 2gh1A 301 4.28e+01 1e7lA 157 4.41e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1t0qB 330 4.44e+01 a.25.1.2 106221 1z54A 132 4.57e+01 1ohzB 60 4.62e+01 a.139.1.1 93044 2cg4A 152 4.66e+01 1qeyA 31 4.69e+01 1qeyA h.2.1.1 45666 1whuA 104 4.73e+01 1rwyA 109 4.82e+01 a.39.1.4 98002 1kb9D 246 4.90e+01 a.3.1.3,f.23.11.1 77317,77318 1vqoY 241 4.96e+01 2c9wA 169 5.27e+01 1k5nA 276 5.27e+01 b.1.1.2,d.19.1.1 77266,77267 1of9A 77 5.28e+01 a.64.1.4 92821 1d02A 202 5.33e+01 1d02A c.52.1.8 33313 1gw5S 142 5.38e+01 d.110.4.2 70633 1q6zA 528 5.70e+01 1tp5A 119 5.73e+01 1fjhA 257 5.88e+01 1fjhB c.2.1.2 29870 1puc 105 5.95e+01 1puc d.97.1.1 40675 1eteA 134 6.02e+01 1eteA a.26.1.2 16869 1e1hB 174 6.09e+01 1g0oA 283 6.26e+01 1ybvA c.2.1.2 60181 2cfaA 217 6.33e+01 1v7rA 186 6.46e+01 c.51.4.1 100482 1fjgN 61 6.55e+01 1fjfN g.39.1.7 45154 1xizA 159 6.75e+01 1wusA 180 6.87e+01 1fit 147 7.01e+01 1fit d.13.1.1 37499 1ro0A 216 7.02e+01 d.264.1.2 97664 1yqyA 523 7.07e+01 1x6mA 196 7.20e+01 2fwkA 121 7.21e+01 1sseB 86 7.21e+01 1p7gA 222 7.29e+01 a.2.11.1,d.44.1.1 94223,94224 1cfr 285 7.34e+01 1cfr c.52.1.7 33312 1tdpA 111 7.34e+01 a.29.8.1 106781 1i8fA 81 7.37e+01 1i8fA b.38.1.1 61959 1h7sA 365 7.57e+01 d.14.1.3,d.122.1.2 65705,65706 1nynA 131 7.64e+01 d.235.1.1 86410 1twfC 318 7.75e+01 1xpa 122 7.75e+01 1xpa a.6.1.2,g.39.1.5 16308,45151 1xfhA 422 8.05e+01 1cunA 213 8.06e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 2cwyA 94 8.11e+01 2ae5B 528 8.66e+01 2fnoA 248 8.68e+01 2fupA 168 8.74e+01 1u3dA 509 8.75e+01 a.99.1.1,c.28.1.1 107638,107639 2acvA 463 8.91e+01