# List of top-scoring protein chains for T0383.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m2eA 135 3.10e+00 c.23.1.5 78478 1r8jA 289 7.62e+00 a.186.1.1,c.23.1.5 104847,104848 1xx7A 184 9.30e+00 1x5kA 124 9.42e+00 1itxA 419 1.07e+01 c.1.8.5,d.26.3.1 71425,71426 1goiA 499 1.39e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1nhkL 144 1.42e+01 1npk d.58.6.1 39142 1dkfB 235 1.47e+01 2lbd a.123.1.1 19281 1h0iA 499 1.62e+01 b.72.2.1,c.1.8.5,d.26.3.1 70838,70839,70840 1e6zA 498 1.62e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59330,59331,59332 1o6iA 499 1.62e+01 b.72.2.1,c.1.8.5,d.26.3.1 86630,86631,86632 1g7dA 106 1.73e+01 1g7dA a.71.1.1 18318 1rf8A 213 1.84e+01 d.86.1.1 97370 1x6mA 196 2.34e+01 1ogbA 499 2.41e+01 b.72.2.1,c.1.8.5,d.26.3.1 92882,92883,92884 1ur9A 499 2.41e+01 b.72.2.1,c.1.8.5,d.26.3.1 99819,99820,99821 1fd0A 235 2.48e+01 a.123.1.1 76164 1fcyA 236 2.48e+01 2lbd a.123.1.1 19282 1exaA 246 2.57e+01 2lbd a.123.1.1 19285 2lbd 267 2.63e+01 2lbd a.123.1.1 19287 2gp5A 349 2.74e+01 1y9wA 140 2.88e+01 1x3bA 146 3.09e+01 1z3zA 431 3.30e+01 1wgeA 83 3.36e+01 1m0qA 433 3.37e+01 c.67.1.4 78350 1ttuA 477 3.39e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1s1iX 120 3.40e+01 i.1.1.1 105198 1xapA 267 3.55e+01 1g0u1 266 3.58e+01 1nexB 464 3.69e+01 a.158.1.1,b.69.4.1 80443,80444 1fjjA 159 3.76e+01 1fjjA b.17.1.2 59852 1iruJ 205 3.80e+01 d.153.1.4 71361 1ryp2 233 3.82e+01 1ryp2 2gupA 292 3.85e+01 1vi3A 170 3.92e+01 b.17.1.2 100730 2kfnA 605 3.93e+01 1xwl c.55.3.5,e.8.1.1 33682,42975 1kfd 605 3.93e+01 1xwl c.55.3.5,e.8.1.1 33694,42987 1xdkB 303 3.94e+01 1e6pA 499 3.99e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1sseB 86 4.11e+01 1oftA 161 4.15e+01 c.37.1.22 86968 2bl1A 172 4.32e+01 1yvoA 172 4.38e+01 1ul4A 94 4.73e+01 g.72.1.1 99538 1klnA 605 4.83e+01 1xwl c.55.3.5,e.8.1.1 33693,42986 1fs1A 53 4.85e+01 1fqvA a.158.1.1 19250 2dgaA 565 4.92e+01 1dgd 432 4.92e+01 2dkb c.67.1.4 34443 1d7uA 433 5.02e+01 2dkb c.67.1.4 34439 1jj2E 177 5.21e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 1vqoE 178 5.34e+01 1ofuX 119 5.47e+01 c.37.1.22 86976 2f4eA 180 5.58e+01 1d8yA 605 5.69e+01 1xwl c.55.3.5,e.8.1.1 33684,42977 1ldkE 41 5.71e+01 a.158.1.1 73857 2h6nA 312 5.77e+01 1yn9A 169 5.85e+01 2anpA 291 5.88e+01 1lokA 291 5.92e+01 c.56.5.4 78122 2gnqA 336 5.93e+01 1rtqA 299 6.02e+01 c.56.5.4 97819 1f5yA 85 6.44e+01 1f5yA g.12.1.1,g.12.1.1 44610,44611 1yxlA 119 6.66e+01 2mtaH 373 6.72e+01 2bbkH b.69.2.1 27636 1khbA 625 6.96e+01 c.91.1.1,c.109.1.1 68606,68607 1q98A 165 7.01e+01 c.47.1.10 96253 1uq5A 263 7.05e+01 d.165.1.1 99778 1ea6A 364 7.06e+01 d.14.1.3,d.122.1.2 64871,64872 1h7sA 365 7.06e+01 d.14.1.3,d.122.1.2 65705,65706 2a7sA 548 7.09e+01 1a7aA 432 7.81e+01 1b3rA c.2.1.4,c.23.12.3 30104,31364 1li4A 432 7.84e+01 c.2.1.4,c.23.12.3 84616,84617 2bbkH 355 7.88e+01 2bbkH b.69.2.1 27634 1sq0A 214 8.28e+01 c.62.1.1 98959 1uexC 209 8.31e+01 c.62.1.1 99284 1ap8 213 8.35e+01 1ap8 d.86.1.1 40151 1auq 208 8.38e+01 1auq c.62.1.1 34137 2rig 144 8.44e+01 1d9cA a.26.1.3 16921 1j1mA 268 8.51e+01 d.165.1.1 90767 1daqA 71 8.74e+01 1daqA a.139.1.1 59113 2agjL 215 8.91e+01 1ijbA 202 8.92e+01 c.62.1.1 71229