# List of top-scoring protein chains for t04-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ukfA 188 5.68e-01 d.3.1.10 99488 1mugA 168 1.00e+00 1mugA c.18.1.2 31030 1xauA 122 1.40e+00 1fcyA 236 2.11e+00 2lbd a.123.1.1 19282 1qynA 153 2.29e+00 d.33.1.1 96597 1u6zA 513 2.66e+00 1fnsA 196 2.73e+00 1auq c.62.1.1 34136 1oshA 232 2.77e+00 a.123.1.1 93496 1ijbA 202 3.16e+00 c.62.1.1 71229 1yvoA 172 3.51e+00 2kfnA 605 3.63e+00 1xwl c.55.3.5,e.8.1.1 33682,42975 1erjA 393 4.33e+00 1erjA b.69.4.1 27660 1ud9A 245 4.98e+00 d.131.1.2,d.131.1.2 107768,107769 1qwrA 319 5.22e+00 b.82.1.3 96491 2czrA 226 5.23e+00 2bl1A 172 5.50e+00 2gf6A 135 5.65e+00 1mkaA 171 6.51e+00 1mkaA d.38.1.2 38543 1z5yE 149 7.71e+00 1zcbA 362 7.81e+00 2bjfA 329 8.15e+00 1j93A 353 8.41e+00 c.1.22.1 66454 1qysA 106 9.21e+00 k.41.1.1 96603 1w07A 659 9.51e+00 1g5aA 628 9.64e+00 b.71.1.1,c.1.8.1 65152,65153 1kjvB 100 9.95e+00 b.1.1.2 77423 2ggcA 263 9.98e+00 1z54A 132 1.06e+01 1li4A 432 1.06e+01 c.2.1.4,c.23.12.3 84616,84617 1ewfA 456 1.09e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 2b8eA 273 1.20e+01 1s1eA 224 1.28e+01 1iz0A 302 1.32e+01 b.35.1.2,c.2.1.1 83821,83822 1g7dA 106 1.35e+01 1g7dA a.71.1.1 18318 1e8gA 560 1.43e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 2fhi 147 1.45e+01 1fit d.13.1.1 37505 1xoyA 161 1.52e+01 1edg 380 1.55e+01 1edg c.1.8.3 28807 1xwfA 431 1.57e+01 1mnnA 340 1.62e+01 b.2.5.7 79324 1g0sA 209 1.79e+01 1g0sA d.113.1.1 60187 2d8aA 348 1.81e+01 2c36A 285 1.85e+01 1d4fA 431 1.89e+01 1b3rA c.2.1.4,c.23.12.3 30110,31370 1lk2B 99 1.95e+01 b.1.1.2 91058 1fit 147 1.95e+01 1fit d.13.1.1 37499 1fzoB 99 1.96e+01 1agdB b.1.1.2 60157 2f51A 118 1.99e+01 1imjA 210 2.04e+01 c.69.1.23 71246 1bh9A 45 2.05e+01 1bh9A a.22.1.3 16483 1g99A 408 2.13e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 1yo1A 260 2.14e+01 1eceA 358 2.18e+01 1eceA c.1.8.3 28813 1fzkB 99 2.18e+01 1agdB b.1.1.2 60151 2dkb 433 2.23e+01 2dkb c.67.1.4 34438 1mc0A 368 2.24e+01 d.110.2.1,d.110.2.1 78937,78938 1oqjA 97 2.31e+01 d.217.1.1 93417 1t64A 377 2.36e+01 c.42.1.2 106543 1w1kA 560 2.36e+01 d.58.32.1,d.145.1.1 109059,109060 1fjjA 159 2.38e+01 1fjjA b.17.1.2 59852 1c24A 263 2.39e+01 1c24A d.127.1.1 41148 1vhmA 195 2.39e+01 d.110.2.1 100691 2c3vA 102 2.43e+01 3pmgA 561 2.53e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1us8A 147 2.56e+01 c.37.1.12 99859 1kopA 223 2.67e+01 2cba b.74.1.1 27966 1koiA 184 2.78e+01 b.60.1.1 68725 1v61A 132 2.79e+01 b.55.1.1 108389 2cba 260 2.84e+01 2cba b.74.1.1 27821 1cqqA 180 2.88e+01 1cqqA b.47.1.4 26422 1sjqA 105 2.89e+01 d.58.7.1 105660 1gcvB 136 2.95e+01 1cg5B a.1.1.2 15589 1x8qA 184 3.00e+01 1o0xA 262 3.08e+01 d.127.1.1 80755 1pv5A 264 3.09e+01 d.251.1.1 95150 1f2tA 149 3.10e+01 1f2tA c.37.1.12 32373 2c6cA 707 3.11e+01 1lj8A 493 3.29e+01 a.100.1.9,c.2.1.6 90392,90393 1yqdA 366 3.31e+01 1wt4A 73 3.38e+01 1mkyA 439 3.43e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1fm4A 159 3.45e+01 1bv1 d.129.3.1 76186 1wc2A 181 3.50e+01 1lugA 259 3.52e+01 b.74.1.1 91127 1sy3A 184 3.59e+01 b.60.1.1 106110 1y01A 102 3.59e+01 1dytA 133 3.59e+01 7rsa d.5.1.1 37288 1mkmA 249 3.62e+01 a.4.5.33,d.110.2.2 79242,79243 1ia9A 280 3.66e+01 1ia9A d.144.1.5 62113 1hkkA 364 3.70e+01 c.1.8.5,d.26.3.1 90634,90635 2gnqA 336 3.71e+01 1n12A 138 3.72e+01 b.2.3.2 79779 1yemA 179 3.74e+01 1dm0A 287 3.80e+01 1dm0A d.165.1.2 42227 1msk 331 3.81e+01 1msk d.173.1.1 42495 1ceo 343 3.87e+01 1ceo c.1.8.3 28808 1oj4A 283 3.87e+01 d.14.1.5,d.58.26.5 93083,93084 1bv1 159 3.88e+01 1bv1 d.129.3.1 41313 1ooeA 236 3.88e+01 c.2.1.2 87196 2b9wA 424 3.90e+01 2giyA 191 3.90e+01 1de4C 640 4.29e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1gtmA 419 4.29e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1erxA 184 4.30e+01 1np1A b.60.1.1 27164 1m4iA 181 4.33e+01 d.108.1.1 74457 1koqA 253 4.37e+01 2cba b.74.1.1 27964 1snzA 344 4.45e+01 b.30.5.4 98930 1i58A 189 4.53e+01 1b3qA d.122.1.3 61773 2ad9A 119 4.60e+01 1q77A 138 4.61e+01 c.26.2.4 96023 1l1jA 239 4.61e+01 b.47.1.1 84516 1ako 268 4.73e+01 1ako d.151.1.1 41779 1lshA 1056 4.75e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1xnzA 264 4.82e+01 2napA 723 4.87e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1ovaA 386 4.89e+01 1ovaA e.1.1.1 42619 7odcA 424 4.94e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1ex2A 189 4.98e+01 1ex2A c.51.4.2 33225 1fl1A 230 4.99e+01 1at3A b.57.1.1 27023 2h0bA 184 5.05e+01 1d7uA 433 5.08e+01 2dkb c.67.1.4 34439 2bjbA 462 5.12e+01 1n0xL 215 5.14e+01 b.1.1.1,b.1.1.2 91532,91533 1led 243 5.16e+01 1led b.29.1.1 24039 1vqoE 178 5.17e+01 1wbpA 397 5.20e+01 1h21A 247 5.33e+01 a.138.1.3 76510 1qmeA 702 5.48e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1tzfA 259 5.50e+01 c.68.1.13 107476 1vqzA 341 5.51e+01 1qj4A 257 5.53e+01 1qj4A c.69.1.20 34796 1zpyA 95 5.53e+01 1njkA 156 5.54e+01 d.38.1.1 85818 1dlfL 113 5.55e+01 8fabA b.1.1.1 20382 1q98A 165 5.64e+01 c.47.1.10 96253 1do6A 124 5.69e+01 1do6A b.1.13.1 22361 1yasA 257 5.69e+01 1qj4A c.69.1.20 34801 1vq0A 302 5.70e+01 2d5cA 263 5.73e+01 1wudA 89 5.91e+01 1wvcA 259 5.92e+01 1m98A 317 5.98e+01 a.175.1.1,d.17.4.6 78866,78867 1onwA 390 6.02e+01 b.92.1.7,c.1.9.13 87172,87173 1xgyL 216 6.04e+01 1etxA 98 6.08e+01 1fipA a.4.1.12 18978 1ub4A 110 6.10e+01 b.34.6.2 88399 1wpoA 256 6.22e+01 1lay b.57.1.1 27012 1wywA 230 6.26e+01 1onxA 390 6.30e+01 b.92.1.7,c.1.9.13 87176,87177 2cy0A 263 6.37e+01 1qahA 136 6.41e+01 d.79.1.1 96338 1zjcA 418 6.45e+01 1vjpA 394 6.54e+01 c.2.1.3,d.81.1.3 100828,100829 1jr7A 311 6.63e+01 b.82.2.3 63255 1wb0A 445 6.64e+01 9wgaA 171 6.64e+01 9wgaA g.3.1.1,g.3.1.1,g.3.1.1,g.3.1.1 44000,44001,44002,44003 2cwzA 141 6.66e+01 1w0bA 102 6.72e+01 a.7.11.1 108985 2g30A 258 6.74e+01 1nfjA 89 6.75e+01 d.68.6.1 91866 1i4fB 100 6.82e+01 1agdB b.1.1.2 61689 1yqtA 538 6.85e+01 1j27A 102 6.89e+01 d.58.50.1 90778 1p42A 270 6.97e+01 d.14.1.7,d.14.1.7 87754,87755 2bvpA 276 7.12e+01 2g6yA 217 7.21e+01 1wzcA 249 7.23e+01 1yqvL 211 7.31e+01 1eonA 245 7.32e+01 1rvaA c.52.1.2 33238 1vz6A 393 7.33e+01 d.154.1.2 108949 1kjlA 146 7.38e+01 1dqiA 124 7.41e+01 1do6A b.1.13.1 22357 1jmaA 290 7.41e+01 b.1.1.1 63177 1xvsA 126 7.42e+01 1ofgA 381 7.62e+01 1ofgA c.2.1.3,d.81.1.5 30064,39979 1h10A 125 7.64e+01 b.55.1.1 83446 2gx9A 129 7.64e+01 1pz4A 116 7.71e+01 d.106.1.1 95400 1k5nB 100 7.75e+01 b.1.1.2 77268 1ospL 214 7.75e+01 32c2A b.1.1.1,b.1.1.2 20116,21146 1jj2E 177 7.79e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 1ryp2 233 7.80e+01 1ryp2 1jp4A 308 7.85e+01 1jp4A e.7.1.1 63223 1o86A 589 7.86e+01 d.92.1.5 81177 1yckA 175 7.87e+01 1unqA 125 7.87e+01 b.55.1.1 107968 1tetL 216 7.98e+01 32c2A b.1.1.1,b.1.1.2 19902,20996 1t01B 24 7.99e+01 1jk7A 323 8.00e+01 1auiA d.159.1.3 63144 1vkfA 188 8.01e+01 c.1.29.1 108656 1cyj 90 8.01e+01 1ctj a.3.1.1 15805 1gnd 447 8.06e+01 1gnd c.3.1.3,d.16.1.6 30423,37987 1zuhA 168 8.12e+01 1s0yA 76 8.12e+01 d.80.1.1 98314 1tkiA 321 8.13e+01 1tkiA d.144.1.7 41638 1uujA 88 8.17e+01 a.221.1.1 108046 1phm 310 8.22e+01 1phm b.121.1.2,b.121.1.2 59015,59016 1rp3B 88 8.23e+01 a.137.11.1 97681 1uzeA 589 8.30e+01 d.92.1.5 108174 1ji8A 111 8.34e+01 d.203.1.1 66733 1cojA 212 8.35e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1y8cA 246 8.35e+01 1vkyA 347 8.36e+01 e.53.1.1 108696 4icb 76 8.55e+01 4icb a.39.1.1 17145 1zxiC 288 8.56e+01 1t3qC 288 8.57e+01 d.87.2.1,d.145.1.3 106371,106372 1nytA 271 8.59e+01 c.2.1.7,c.58.1.5 86417,86418 1d8cA 723 8.60e+01 1d8cA c.1.13.1 29325 1r8mE 203 8.63e+01 a.118.3.1 97242 1wxdA 263 8.66e+01 1olzA 663 8.68e+01 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2ck3H 146 8.73e+01 1i39A 225 8.77e+01 1ekeA c.55.3.1 61585 1jjeA 222 8.78e+01 1a7tA d.157.1.1 63117 2fqxA 318 8.82e+01 1j5yA 187 8.86e+01 a.4.5.1,d.94.2.1 71592,71593 1gqeA 365 8.87e+01 e.38.1.1 70351 1tf1A 198 8.88e+01 d.110.2.2 106826 1a3k 137 8.92e+01 1a3k b.29.1.3 24218 1wrvA 308 8.96e+01 1h6dA 433 8.98e+01 c.2.1.3,d.81.1.5 65656,65657