# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2kfnA 605 4.17e-01 1xwl c.55.3.5,e.8.1.1 33682,42975 1qynA 153 9.04e-01 d.33.1.1 96597 1vhmA 195 1.38e+00 d.110.2.1 100691 2ggcA 263 2.19e+00 1mugA 168 2.24e+00 1mugA c.18.1.2 31030 1c24A 263 2.48e+00 1c24A d.127.1.1 41148 1xnzA 264 2.49e+00 1u6zA 513 3.41e+00 1f2tA 149 4.37e+00 1f2tA c.37.1.12 32373 1ijbA 202 4.65e+00 c.62.1.1 71229 1vq0A 302 5.03e+00 1us8A 147 5.51e+00 c.37.1.12 99859 1oshA 232 6.48e+00 a.123.1.1 93496 1ttuA 477 6.99e+00 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1m9sA 605 7.71e+00 b.1.18.15,b.34.11.1,b.34.11.1,b.34.11.1,c.10.2.1 78874,78875,78876,78877,78878 2bl1A 172 7.78e+00 1o0xA 262 8.27e+00 d.127.1.1 80755 1sjqA 105 8.31e+00 d.58.7.1 105660 1yvoA 172 8.34e+00 1fnsA 196 8.49e+00 1auq c.62.1.1 34136 1j93A 353 8.52e+00 c.1.22.1 66454 1mc0A 368 8.74e+00 d.110.2.1,d.110.2.1 78937,78938 1ukfA 188 8.94e+00 d.3.1.10 99488 1hwxA 501 1.03e+01 1hwyA c.2.1.7,c.58.1.1 30250,33898 1bh9A 45 1.20e+01 1bh9A a.22.1.3 16483 1njkA 156 1.29e+01 d.38.1.1 85818 1ako 268 1.33e+01 1ako d.151.1.1 41779 1h10A 125 1.40e+01 b.55.1.1 83446 1unqA 125 1.40e+01 b.55.1.1 107968 2fhi 147 1.42e+01 1fit d.13.1.1 37505 1fit 147 1.50e+01 1fit d.13.1.1 37499 1onwA 390 1.51e+01 b.92.1.7,c.1.9.13 87172,87173 1d4fA 431 1.53e+01 1b3rA c.2.1.4,c.23.12.3 30110,31370 1li4A 432 1.60e+01 c.2.1.4,c.23.12.3 84616,84617 1cx4A 305 1.70e+01 b.82.3.2,b.82.3.2 59099,59100 3pmgA 561 1.70e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1wucA 250 1.76e+01 1onxA 390 1.77e+01 b.92.1.7,c.1.9.13 87176,87177 1k2eA 156 1.78e+01 d.113.1.1 72010 1xwfA 431 1.79e+01 1sglA 209 1.80e+01 d.124.1.1 105536 1i1iP 681 1.82e+01 1i1iP d.92.1.5 40297 1ysqA 193 1.84e+01 1fl1A 230 1.91e+01 1at3A b.57.1.1 27023 1cqqA 180 1.96e+01 1cqqA b.47.1.4 26422 1k3xA 262 1.98e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1vjpA 394 2.01e+01 c.2.1.3,d.81.1.3 100828,100829 1ta0A 197 2.03e+01 c.108.1.16 106729 1qxyA 252 2.04e+01 d.127.1.1 96565 1s1eA 224 2.11e+01 1h6tA 291 2.17e+01 b.1.18.15,c.10.2.1 65686,65687 1w1kA 560 2.25e+01 d.58.32.1,d.145.1.1 109059,109060 1kopA 223 2.32e+01 2cba b.74.1.1 27966 1qmeA 702 2.34e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1wywA 230 2.40e+01 1e8gA 560 2.45e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1fcyA 236 2.51e+01 2lbd a.123.1.1 19282 1xesA 413 2.55e+01 1azpA 66 2.55e+01 1azpA b.34.13.1 37467 1vrpA 381 2.55e+01 1xrtA 467 2.65e+01 1dwnA 127 2.71e+01 1dwnA d.85.1.1 40141 1z54A 132 2.74e+01 1bv1 159 2.76e+01 1bv1 d.129.3.1 41313 1erjA 393 2.85e+01 1erjA b.69.4.1 27660 1z5yE 149 3.24e+01 1qysA 106 3.31e+01 k.41.1.1 96603 1jy5A 212 3.37e+01 d.124.1.1 71940 1p7tA 731 3.40e+01 c.1.13.1 94319 1epaA 164 3.51e+01 1epaA b.60.1.1 27128 1do6A 124 3.55e+01 1do6A b.1.13.1 22361 1wpoA 256 3.62e+01 1lay b.57.1.1 27012 1jjeA 222 3.66e+01 1a7tA d.157.1.1 63117 1ud9A 245 3.70e+01 d.131.1.2,d.131.1.2 107768,107769 1dowA 205 3.72e+01 1dovA a.24.9.1 16626 1mkmA 249 3.74e+01 a.4.5.33,d.110.2.2 79242,79243 2giyA 191 3.82e+01 1hyeA 313 3.94e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1dqiA 124 4.09e+01 1do6A b.1.13.1 22357 2gx9A 129 4.14e+01 2bskB 90 4.36e+01 1sefA 274 4.57e+01 b.82.1.11 105452 1xhbA 472 4.58e+01 1dzkA 157 4.62e+01 1obpA b.60.1.1 27096 1gtmA 419 4.66e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1sviA 195 5.05e+01 c.37.1.8 106048 2h4uA 145 5.11e+01 2b8eA 273 5.36e+01 1musA 477 5.42e+01 c.55.3.4 79494 2bjfA 329 5.46e+01 2gf6A 135 5.48e+01 1hvyA 288 5.48e+01 1bkpA d.117.1.1 41049 1fvrA 327 5.52e+01 d.144.1.7 60047 1uujA 88 5.70e+01 a.221.1.1 108046 1noyA 388 5.75e+01 1clqA c.55.3.5 33713 1bmdA 327 5.76e+01 1bmdA c.2.1.5,d.162.1.1 30139,42106 1y7tA 327 5.77e+01 1bdmA 327 5.83e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 1o6vA 466 5.85e+01 b.1.18.15,c.10.2.1 81099,81100 1xoyA 161 5.86e+01 1gd0A 122 5.92e+01 1dptA d.80.1.3 39834 1w6uA 302 6.12e+01 1qs1A 462 6.13e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1oo2A 119 6.14e+01 b.3.4.1 93372 1sr9A 644 6.18e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1t01B 24 6.30e+01 1q77A 138 6.36e+01 c.26.2.4 96023 2a15A 139 6.36e+01 1qqcA 773 6.42e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1w07A 659 6.54e+01 1lf7A 182 6.59e+01 b.60.1.1 73878 1ys1X 320 6.66e+01 1oj4A 283 6.83e+01 d.14.1.5,d.58.26.5 93083,93084 1az9 457 6.87e+01 1az9 c.55.2.1,d.127.1.1 33547,41164 1w36C 1122 6.87e+01 1xkyA 301 6.92e+01 1d8cA 723 6.95e+01 1d8cA c.1.13.1 29325 1jv4A 162 6.96e+01 b.60.1.1 67343 1ftrA 296 6.98e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 2bwvA 440 7.02e+01 1wl9A 440 7.03e+01 2f51A 118 7.19e+01 1jfmA 174 7.26e+01 d.19.1.1 66640 1sy3A 184 7.29e+01 b.60.1.1 106110 1zpyA 95 7.29e+01 1vs0A 310 7.32e+01 1erxA 184 7.34e+01 1np1A b.60.1.1 27164 1koiA 184 7.34e+01 b.60.1.1 68725 1jeoA 180 7.38e+01 c.80.1.3 66611 1zndA 174 7.38e+01 2cwzA 141 7.43e+01 1x13A 401 7.56e+01 1mkaA 171 7.84e+01 1mkaA d.38.1.2 38543 1yqtA 538 7.85e+01 1pc3A 350 7.92e+01 c.94.1.1 104102 1qciA 262 7.95e+01 1qi7A d.165.1.1 42201 1dytA 133 8.14e+01 7rsa d.5.1.1 37288 1vhoA 346 8.17e+01 b.49.3.1,c.56.5.4 100694,100695 1ro0A 216 8.23e+01 d.264.1.2 97664 1j1qA 261 8.38e+01 d.165.1.1 90768 1ypvA 313 8.42e+01 1ryp2 233 8.42e+01 1ryp2 1l1jA 239 8.44e+01 b.47.1.1 84516 1b56 135 8.49e+01 1hmt b.60.1.2 27183 1dqnA 230 8.59e+01 1dqnA c.61.1.1 34067 2h0eA 121 8.59e+01 1qy1A 174 8.62e+01 b.60.1.1 96568 2bfdA 400 8.66e+01 2g38B 198 8.68e+01 1dqpA 230 8.71e+01 1dqnA c.61.1.1 34069 1ry6A 360 8.83e+01 c.37.1.9 98090 1x7yA 400 8.88e+01 2be3A 226 8.90e+01 1m4jA 142 8.96e+01 d.109.1.2 78602 1odkA 235 8.96e+01 c.56.2.1 86863 1qeyA 31 8.98e+01 1qeyA h.2.1.1 45666