# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a9uA 144 6.55e-01 1jk0A 419 6.60e-01 a.25.1.2 63142 1ea1A 455 9.08e-01 1ea1A a.104.1.1 18970 1h5zA 455 9.11e-01 a.104.1.1 90622 1e9xA 455 9.55e-01 1ea1A a.104.1.1 18969 1bvsB 203 1.06e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16281,17956,25275 1u13A 455 1.12e+00 a.104.1.1 107578 1yn9A 169 1.44e+00 1x8vA 455 1.50e+00 1xsm 390 2.86e+00 1xsm a.25.1.2 16804 1hjp 203 2.95e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16274,17947,25266 1dt6A 473 3.40e+00 1dt6A a.104.1.1 18977 1h3nA 878 3.91e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1gvhA 396 4.16e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1ka2A 499 4.73e+00 d.92.1.5 77305 1up6A 416 5.28e+00 c.2.1.5,d.162.1.2 107976,107977 1up7A 417 5.62e+00 1trrA 107 5.77e+00 1jhgA a.4.12.1 19017 1n6bA 473 5.81e+00 a.104.1.1 85359 1cezA 883 7.48e+00 1cezA e.8.1.3 43110 4rnpA 883 7.81e+00 1cezA e.8.1.3 43113 1lniA 96 7.87e+00 d.1.1.2 74046 1hm6A 346 7.99e+00 1avc a.65.1.1 18147 1rgeA 96 8.30e+00 1rgeA d.1.1.2 36028 1gmpA 96 8.31e+00 1rgeA d.1.1.2 36036 1i8vA 96 8.31e+00 d.1.1.2 61985 1lrv 244 8.75e+00 1lrv a.118.1.5 19146 1h0oA 390 9.50e+00 a.25.1.2 70845 1w27A 714 9.54e+00 1w5tA 412 9.77e+00 1rcsA 105 9.95e+00 1jhgA a.4.12.1 19025 1h38D 883 1.06e+01 e.8.1.3 76628 1h38B 883 1.06e+01 e.8.1.3 76626 1h38C 883 1.06e+01 e.8.1.3 76627 1uhgA 385 1.07e+01 e.1.1.1 88491 1jr3E 334 1.08e+01 a.80.1.1,c.37.1.20 63253,63254 1qlnA 883 1.09e+01 1cezA e.8.1.3 43111 2wrpR 107 1.11e+01 1jhgA a.4.12.1 19010 1ovaA 386 1.11e+01 1ovaA e.1.1.1 42619 1jhgA 101 1.13e+01 1jhgA a.4.12.1 19009 1rm6C 161 1.19e+01 1nr6A 473 1.19e+01 a.104.1.1 92085 1wurA 220 1.23e+01 1w68A 390 1.34e+01 a.25.1.2 109216 1mgrA 99 1.37e+01 d.1.1.2 79106 1j7nA 776 1.39e+01 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1cuk 203 1.49e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1pylA 97 1.62e+01 d.1.1.2 104391 2cwyA 94 1.63e+01 1r1uA 106 1.69e+01 a.4.5.5 104771 2fd5A 180 1.73e+01 1k3lA 221 1.78e+01 a.45.1.1,c.47.1.5 77229,77230 1k3yA 221 1.78e+01 a.45.1.1,c.47.1.5 77245,77246 1gseA 221 1.78e+01 1pgtA a.45.1.1,c.47.1.5 17667,32961 1u2wA 122 1.79e+01 1wu7A 434 1.79e+01 1aii 323 1.87e+01 1avc a.65.1.1 18150 1odoA 408 1.88e+01 a.104.1.1 92783 1cem 363 1.88e+01 1cem a.102.1.2 18826 1wjbA 55 1.95e+01 1wjcA a.4.10.1 16265 1v8bA 479 1.96e+01 1iygA 133 2.04e+01 a.118.8.1 76947 1axn 323 2.07e+01 1avc a.65.1.1 18149 1gl2C 65 2.08e+01 h.1.15.1 65280 2bidA 197 2.10e+01 2bidA f.1.4.1 43398 1i7kA 179 2.18e+01 1u9aA d.20.1.1 61889 1y6zA 263 2.19e+01 1z3xA 238 2.22e+01 1a5t 334 2.23e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1avoB 140 2.24e+01 1avoB 1j7nB 776 2.34e+01 d.92.1.14,d.92.1.14,d.166.1.1 66412,66413,66414 1jk0B 345 2.35e+01 a.25.1.2 63143 1i4mA 108 2.43e+01 d.6.1.1 66025 1wj7A 104 2.43e+01 1zl8B 54 2.43e+01 1sqgA 429 2.44e+01 a.79.1.3,c.66.1.38 105912,105913 1ho8A 480 2.55e+01 1ho8A a.118.1.9 61107 1p7tA 731 2.57e+01 c.1.13.1 94319 1eblA 317 2.69e+01 1hn9A c.95.1.2,c.95.1.2 35973,35974 1ig6A 107 2.75e+01 1ig6A a.4.3.1 62364 1kkhA 317 2.76e+01 d.14.1.5,d.58.26.3 72645,72646 2fbnA 198 2.81e+01 1i4yA 114 2.86e+01 2mhr a.24.4.1 61738 1aroP 883 2.87e+01 1cezA e.8.1.3 43112 1b8pA 329 2.89e+01 1bmdA c.2.1.5,d.162.1.1 30147,42114 1muyA 225 2.92e+01 1mun a.96.1.2 18745 1mun 225 2.93e+01 1mun a.96.1.2 18744 2bb6A 414 2.93e+01 1t3qA 168 2.94e+01 a.56.1.1,d.15.4.2 106367,106368 1d1rA 116 3.01e+01 1d1rA d.64.1.1 39548 1y74B 50 3.01e+01 1vkuA 100 3.07e+01 a.28.1.1 108690 1deeG 54 3.10e+01 1fc2C a.8.1.1 16343 1eblB 317 3.12e+01 1hn9A c.95.1.2,c.95.1.2 35975,35976 2ah6A 208 3.16e+01 1d8cA 723 3.16e+01 1d8cA c.1.13.1 29325 1ybhA 590 3.19e+01 2f4mA 295 3.28e+01 1tw9A 206 3.28e+01 a.45.1.1,c.47.1.5 107381,107382 1i0hA 205 3.31e+01 1avmA a.2.11.1,d.44.1.1 15760,38685 1kwfA 363 3.41e+01 a.102.1.2 73078 1xszA 356 3.43e+01 1z7lA 276 3.44e+01 1d5nA 205 3.44e+01 1avmA a.2.11.1,d.44.1.1 15762,38687 2bcqA 335 3.47e+01 1ix9A 205 3.48e+01 a.2.11.1,d.44.1.1 76899,76900 1yb3A 175 3.54e+01 1vddA 228 3.66e+01 e.49.1.1 108519 1cqxA 403 3.74e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1zymA 258 3.78e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1rzrA 332 3.79e+01 1w99A 558 3.90e+01 1kyoA 430 4.06e+01 d.185.1.1,d.185.1.1 73249,73250 1s9rA 410 4.08e+01 d.126.1.4 98758 1oyzA 280 4.29e+01 a.118.1.16 93775 1kb9A 431 4.31e+01 d.185.1.1,d.185.1.1 77311,77312 1yucA 255 4.37e+01 1s8nA 205 4.46e+01 c.23.1.1 105374 1ezvA 430 4.48e+01 1be3A d.185.1.1,d.185.1.1 59541,59542 1lxyA 409 4.48e+01 d.126.1.4 91154 2b1eA 564 4.52e+01 2h58A 330 4.53e+01 1ez0A 510 4.55e+01 1eyyA c.82.1.1 35385 1iq8A 582 4.57e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1nznA 126 4.63e+01 a.118.8.1 92382 1g8pA 350 4.66e+01 1g8pA c.37.1.20 60376 2cohA 202 4.79e+01 2ccmA 191 4.92e+01 1eyyA 510 4.94e+01 1eyyA c.82.1.1 35389 2c12A 439 4.97e+01 1lfkA 398 4.97e+01 a.104.1.1 77926 1n1bA 549 5.20e+01 a.102.4.1,a.128.1.3 79799,79800 1w9cA 321 5.25e+01 1khdA 345 5.42e+01 a.46.2.1,c.27.1.1 77400,77401 1nd9A 49 5.43e+01 a.6.1.6 85575 1bqbA 301 5.44e+01 1hyt d.92.1.2 58962 1zelA 298 5.46e+01 1vrmA 325 5.55e+01 1f1oA 431 5.68e+01 1f1oA a.127.1.1 19433 1svsA 353 5.80e+01 c.37.1.8 106051 1gxyA 226 5.81e+01 d.166.1.3 76380 1rcwA 231 5.93e+01 a.132.1.4 97299 2cujA 108 6.10e+01 1jmsA 381 6.16e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1envA 123 6.23e+01 1envA h.3.2.1 45726 1mp1A 111 6.28e+01 a.188.1.1 91382 1kekA 1231 6.28e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 68524,68525,68526,68527,68528 1cii 602 6.28e+01 1cii f.1.1.1,h.4.3.1 43381,45787 1ks9A 291 6.35e+01 a.100.1.7,c.2.1.6 68857,68858 1pszA 303 6.39e+01 1toaA c.92.2.2 35600 1go3F 107 6.44e+01 a.60.8.2 65407 1as0 353 6.44e+01 1cipA a.66.1.1,c.37.1.8 18212,32095 1dvoA 152 6.45e+01 1dvoA a.136.1.1 19623 1q5zA 177 6.57e+01 a.196.1.1 95954 1e94F 449 6.59e+01 1do0A c.37.1.20 32443 1bl0A 129 6.59e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1ztuA 341 6.61e+01 1fpzA 212 6.65e+01 1fpzA c.45.1.1 59976 6gsvA 217 6.68e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1zy4A 303 6.77e+01 1cipA 353 6.78e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1ag2 103 6.82e+01 1b10A d.6.1.1 37305 2a1iA 146 6.99e+01 1f5aA 513 7.05e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 2fe8A 315 7.13e+01 2b4jC 98 7.15e+01 2c3mA 1231 7.18e+01 1q79A 514 7.23e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1zbdB 134 7.31e+01 1zbdB g.50.1.1 45359 1vmaA 306 7.47e+01 a.24.13.1,c.37.1.10 108887,108888 1xg7A 250 7.48e+01 1wa8A 99 7.55e+01 1tx4A 198 7.61e+01 1tx4A a.116.1.1 19098 1pmzA 86 7.62e+01 a.39.1.10 104195 1p5sA 203 7.65e+01 a.40.1.1 94147 1qm1A 143 7.98e+01 1b10A d.6.1.1 37312 1aeiA 315 8.01e+01 1avc a.65.1.1 18180 1fx7A 230 8.02e+01 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1dm5A 315 8.03e+01 1avc a.65.1.1 18186 1ibjA 464 8.05e+01 1ibjA c.67.1.3 62162 1lm8V 160 8.05e+01 b.3.3.1 74035 1xqoA 256 8.06e+01 2fuqA 747 8.06e+01 1g4yB 101 8.09e+01 1g4yB f.15.1.1 60251 1k1xA 659 8.19e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2d8dA 90 8.32e+01 2f6hX 419 8.33e+01 1x6iA 91 8.43e+01 1ab4 477 8.53e+01 1ab4 e.11.1.1 43251 2bklA 695 8.59e+01 1or7C 90 8.66e+01 a.180.1.1 87336 1dowA 205 8.71e+01 1dovA a.24.9.1 16626 1h4vB 421 8.72e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1dovA 181 8.76e+01 1dovA a.24.9.1 16627 1jchA 551 8.79e+01 b.101.1.1,b.110.1.1,h.4.9.1 66491,66492,66493 1jchC 551 8.79e+01 b.101.1.1,b.110.1.1,h.4.9.1 66495,66496,66497 1z9eA 127 8.98e+01