# TARGET T0382 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0382.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.40194 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.010 0.002 0.004 0.046 0.083 0.854 2 S 0.052 0.010 0.008 0.066 0.118 0.746 3 K 0.044 0.012 0.016 0.079 0.204 0.645 4 L 0.092 0.022 0.030 0.060 0.280 0.516 5 D 0.092 0.020 0.036 0.055 0.265 0.531 6 L 0.026 0.002 0.464 0.103 0.277 0.128 7 H 0.040 0.002 0.387 0.100 0.306 0.165 8 Q 0.137 0.015 0.280 0.097 0.266 0.204 9 M 0.094 0.033 0.015 0.048 0.170 0.641 10 T 0.049 0.028 0.003 0.028 0.067 0.825 11 T 0.002 0.001 0.017 0.934 0.020 0.027 12 Q 0.001 0.001 0.011 0.972 0.010 0.006 13 D 0.001 0.001 0.014 0.976 0.008 0.002 14 L 0.001 0.001 0.008 0.988 0.003 0.002 15 V 0.001 0.001 0.003 0.994 0.002 0.001 16 A 0.001 0.001 0.003 0.994 0.002 0.001 17 L 0.001 0.001 0.002 0.994 0.003 0.001 18 F 0.001 0.001 0.002 0.994 0.002 0.001 19 A 0.001 0.001 0.002 0.993 0.003 0.001 20 K 0.001 0.001 0.003 0.993 0.003 0.001 21 V 0.001 0.001 0.003 0.987 0.005 0.004 22 T 0.001 0.001 0.007 0.970 0.011 0.010 23 V 0.001 0.001 0.009 0.957 0.019 0.014 24 E 0.003 0.001 0.013 0.899 0.036 0.047 25 Q 0.003 0.002 0.024 0.864 0.051 0.057 26 D 0.002 0.001 0.049 0.871 0.047 0.030 27 D 0.001 0.001 0.052 0.904 0.032 0.010 28 A 0.002 0.001 0.059 0.895 0.032 0.011 29 L 0.006 0.002 0.042 0.850 0.065 0.035 30 L 0.013 0.003 0.048 0.763 0.102 0.070 31 G 0.008 0.002 0.062 0.707 0.114 0.108 32 N 0.007 0.003 0.061 0.664 0.137 0.127 33 Q 0.008 0.003 0.087 0.697 0.117 0.088 34 I 0.003 0.001 0.034 0.858 0.060 0.043 35 S 0.002 0.001 0.017 0.919 0.035 0.027 36 R 0.002 0.001 0.011 0.960 0.017 0.010 37 F 0.003 0.001 0.007 0.958 0.019 0.012 38 N 0.002 0.001 0.009 0.954 0.021 0.014 39 R 0.002 0.001 0.006 0.970 0.011 0.010 40 L 0.001 0.001 0.002 0.989 0.003 0.006 41 F 0.001 0.001 0.001 0.989 0.004 0.005 42 G 0.001 0.001 0.003 0.988 0.005 0.003 43 V 0.001 0.001 0.003 0.987 0.006 0.002 44 M 0.001 0.001 0.002 0.991 0.004 0.002 45 A 0.001 0.001 0.002 0.994 0.003 0.001 46 E 0.001 0.001 0.002 0.993 0.003 0.002 47 I 0.001 0.001 0.002 0.988 0.004 0.006 48 A 0.001 0.001 0.004 0.986 0.006 0.004 49 D 0.001 0.001 0.008 0.983 0.006 0.002 50 E 0.001 0.001 0.009 0.974 0.010 0.006 51 L 0.001 0.001 0.014 0.964 0.014 0.007 52 K 0.001 0.001 0.013 0.944 0.025 0.015 53 A 0.002 0.002 0.018 0.763 0.103 0.113 54 R 0.003 0.014 0.024 0.323 0.444 0.192 55 D 0.003 0.004 0.015 0.067 0.719 0.192 56 G 0.002 0.002 0.024 0.068 0.736 0.168 57 D 0.010 0.017 0.022 0.092 0.516 0.344 58 Q 0.016 0.015 0.019 0.580 0.144 0.226 59 R 0.026 0.006 0.014 0.816 0.059 0.080 60 T 0.030 0.007 0.017 0.851 0.041 0.053 61 A 0.041 0.004 0.028 0.878 0.028 0.021 62 L 0.027 0.003 0.049 0.865 0.035 0.020 63 L 0.022 0.001 0.114 0.807 0.044 0.011 64 S 0.024 0.003 0.112 0.792 0.047 0.022 65 L 0.016 0.005 0.173 0.690 0.087 0.028 66 F 0.029 0.009 0.129 0.552 0.198 0.083 67 E 0.044 0.014 0.051 0.372 0.229 0.291 68 Y 0.022 0.015 0.022 0.061 0.775 0.105 69 P 0.007 0.005 0.030 0.086 0.776 0.095 70 N 0.005 0.002 0.049 0.231 0.645 0.068 71 M 0.067 0.014 0.037 0.432 0.396 0.055 72 Q 0.093 0.011 0.010 0.745 0.035 0.106 73 V 0.143 0.008 0.011 0.789 0.018 0.032 74 R 0.087 0.002 0.012 0.855 0.014 0.031 75 L 0.027 0.001 0.011 0.932 0.013 0.017 76 Q 0.013 0.001 0.014 0.940 0.018 0.013 77 A 0.009 0.001 0.016 0.956 0.014 0.004 78 A 0.028 0.001 0.019 0.907 0.038 0.006 79 K 0.048 0.001 0.026 0.828 0.084 0.012 80 L 0.070 0.001 0.021 0.795 0.093 0.020 81 T 0.054 0.001 0.011 0.827 0.061 0.045 82 L 0.058 0.002 0.019 0.813 0.057 0.050 83 A 0.065 0.002 0.009 0.848 0.036 0.041 84 V 0.094 0.005 0.007 0.747 0.032 0.115 85 A 0.049 0.006 0.003 0.296 0.064 0.582 86 P 0.016 0.002 0.002 0.217 0.050 0.714 87 V 0.002 0.001 0.009 0.954 0.014 0.022 88 K 0.003 0.001 0.011 0.958 0.018 0.009 89 A 0.001 0.001 0.011 0.976 0.008 0.004 90 R 0.001 0.001 0.004 0.986 0.005 0.004 91 E 0.001 0.001 0.004 0.987 0.005 0.003 92 Q 0.001 0.001 0.004 0.983 0.008 0.004 93 L 0.001 0.001 0.004 0.982 0.008 0.005 94 E 0.001 0.001 0.005 0.985 0.006 0.002 95 A 0.001 0.001 0.006 0.978 0.010 0.005 96 I 0.001 0.001 0.006 0.963 0.015 0.015 97 V 0.001 0.001 0.010 0.944 0.023 0.021 98 S 0.002 0.001 0.024 0.832 0.080 0.061 99 S 0.003 0.002 0.061 0.584 0.165 0.185 100 K 0.010 0.005 0.057 0.147 0.360 0.422 101 W 0.024 0.027 0.047 0.092 0.381 0.429 102 F 0.032 0.028 0.017 0.028 0.337 0.558 103 P 0.032 0.036 0.043 0.049 0.325 0.516 104 Q 0.028 0.016 0.062 0.066 0.481 0.348 105 A 0.026 0.015 0.086 0.191 0.454 0.228 106 G 0.024 0.022 0.040 0.302 0.340 0.271 107 D 0.022 0.020 0.023 0.674 0.116 0.145 108 A 0.004 0.001 0.010 0.934 0.032 0.018 109 G 0.005 0.002 0.016 0.910 0.047 0.020 110 M 0.010 0.002 0.026 0.907 0.041 0.015 111 C 0.014 0.004 0.037 0.882 0.043 0.020 112 L 0.013 0.002 0.043 0.861 0.064 0.017 113 D 0.015 0.002 0.054 0.804 0.089 0.037 114 L 0.010 0.005 0.052 0.802 0.095 0.036 115 L 0.016 0.008 0.084 0.573 0.278 0.040 116 D 0.015 0.004 0.082 0.487 0.358 0.054 117 D 0.021 0.005 0.057 0.406 0.369 0.142 118 G 0.035 0.007 0.026 0.064 0.407 0.461 119 T 0.119 0.036 0.018 0.030 0.244 0.553 120 F 0.210 0.095 0.012 0.013 0.168 0.503 121 K 0.127 0.019 0.007 0.009 0.229 0.609 122 P 0.040 0.007 0.006 0.015 0.151 0.781 123 K 0.009 0.002 0.001 0.004 0.050 0.934