# TARGET T0382 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0382.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.40194 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.007 0.911 0.003 0.002 0.006 0.001 0.001 0.003 0.023 0.007 0.007 0.029 2 S 0.002 0.028 0.797 0.003 0.005 0.014 0.001 0.001 0.010 0.031 0.019 0.050 0.038 3 K 0.007 0.031 0.587 0.008 0.016 0.027 0.003 0.001 0.013 0.113 0.059 0.026 0.110 4 L 0.006 0.021 0.493 0.004 0.019 0.040 0.003 0.001 0.008 0.226 0.070 0.067 0.042 5 D 0.002 0.022 0.635 0.002 0.031 0.031 0.001 0.001 0.009 0.117 0.057 0.026 0.066 6 L 0.002 0.008 0.166 0.004 0.430 0.084 0.001 0.001 0.003 0.056 0.211 0.005 0.030 7 H 0.004 0.004 0.079 0.013 0.365 0.066 0.001 0.001 0.004 0.128 0.304 0.022 0.011 8 Q 0.005 0.008 0.116 0.007 0.296 0.100 0.002 0.001 0.013 0.108 0.299 0.004 0.040 9 M 0.005 0.038 0.512 0.001 0.009 0.042 0.002 0.001 0.023 0.226 0.019 0.097 0.025 10 T 0.002 0.055 0.727 0.001 0.002 0.042 0.001 0.001 0.013 0.030 0.006 0.006 0.115 11 T 0.001 0.001 0.022 0.001 0.020 0.926 0.001 0.001 0.001 0.008 0.019 0.001 0.002 12 Q 0.001 0.001 0.003 0.001 0.009 0.976 0.001 0.001 0.001 0.003 0.008 0.001 0.001 13 D 0.001 0.001 0.003 0.001 0.006 0.983 0.001 0.001 0.001 0.002 0.005 0.001 0.001 14 L 0.001 0.001 0.002 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.002 0.001 0.001 15 V 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 16 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 17 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 18 F 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 19 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 20 K 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.006 0.001 0.001 21 V 0.001 0.001 0.002 0.001 0.001 0.978 0.001 0.001 0.001 0.002 0.016 0.001 0.001 22 T 0.001 0.001 0.008 0.001 0.002 0.957 0.001 0.001 0.001 0.004 0.026 0.001 0.001 23 V 0.001 0.002 0.017 0.001 0.007 0.902 0.001 0.001 0.002 0.011 0.055 0.001 0.001 24 E 0.001 0.002 0.023 0.001 0.010 0.839 0.001 0.001 0.002 0.025 0.095 0.001 0.002 25 Q 0.001 0.001 0.034 0.001 0.014 0.837 0.001 0.001 0.001 0.032 0.078 0.001 0.002 26 D 0.001 0.001 0.016 0.001 0.030 0.876 0.001 0.001 0.001 0.013 0.063 0.001 0.001 27 D 0.001 0.001 0.020 0.001 0.063 0.833 0.001 0.001 0.001 0.014 0.066 0.001 0.001 28 A 0.001 0.002 0.022 0.001 0.081 0.829 0.001 0.001 0.002 0.013 0.047 0.001 0.003 29 L 0.001 0.005 0.030 0.001 0.043 0.828 0.001 0.001 0.004 0.023 0.058 0.002 0.004 30 L 0.002 0.004 0.037 0.001 0.033 0.755 0.001 0.002 0.004 0.025 0.129 0.004 0.005 31 G 0.001 0.001 0.044 0.001 0.025 0.714 0.001 0.001 0.002 0.035 0.173 0.001 0.003 32 N 0.001 0.002 0.064 0.001 0.025 0.715 0.001 0.001 0.001 0.045 0.142 0.002 0.002 33 Q 0.001 0.005 0.067 0.001 0.025 0.789 0.001 0.001 0.002 0.038 0.067 0.002 0.004 34 I 0.001 0.002 0.056 0.001 0.015 0.860 0.001 0.001 0.003 0.021 0.035 0.002 0.004 35 S 0.001 0.001 0.027 0.001 0.013 0.902 0.001 0.001 0.001 0.014 0.036 0.001 0.002 36 R 0.001 0.001 0.027 0.001 0.016 0.907 0.001 0.001 0.001 0.012 0.031 0.001 0.002 37 F 0.001 0.001 0.022 0.001 0.012 0.921 0.001 0.001 0.003 0.009 0.027 0.001 0.002 38 N 0.001 0.001 0.028 0.001 0.009 0.917 0.001 0.001 0.001 0.019 0.022 0.001 0.002 39 R 0.001 0.001 0.011 0.001 0.008 0.933 0.001 0.001 0.001 0.007 0.038 0.001 0.001 40 L 0.001 0.001 0.008 0.001 0.008 0.924 0.001 0.001 0.001 0.006 0.053 0.001 0.001 41 F 0.001 0.001 0.010 0.001 0.003 0.959 0.001 0.001 0.001 0.007 0.020 0.001 0.001 42 G 0.001 0.001 0.006 0.001 0.004 0.970 0.001 0.001 0.001 0.004 0.014 0.001 0.001 43 V 0.001 0.001 0.004 0.001 0.003 0.980 0.001 0.001 0.001 0.002 0.010 0.001 0.001 44 M 0.001 0.001 0.005 0.001 0.001 0.986 0.001 0.001 0.001 0.002 0.005 0.001 0.001 45 A 0.001 0.001 0.003 0.001 0.001 0.989 0.001 0.001 0.001 0.002 0.005 0.001 0.001 46 E 0.001 0.001 0.002 0.001 0.002 0.983 0.001 0.001 0.001 0.001 0.011 0.001 0.001 47 I 0.001 0.001 0.002 0.001 0.002 0.983 0.001 0.001 0.001 0.001 0.013 0.001 0.001 48 A 0.001 0.001 0.005 0.001 0.004 0.977 0.001 0.001 0.001 0.004 0.010 0.001 0.001 49 D 0.001 0.001 0.004 0.001 0.017 0.954 0.001 0.001 0.001 0.002 0.022 0.001 0.001 50 E 0.001 0.001 0.004 0.001 0.020 0.943 0.001 0.001 0.001 0.003 0.029 0.001 0.001 51 L 0.001 0.001 0.015 0.001 0.030 0.916 0.001 0.001 0.001 0.007 0.030 0.001 0.001 52 K 0.001 0.004 0.020 0.001 0.032 0.757 0.001 0.001 0.001 0.019 0.165 0.001 0.002 53 A 0.001 0.003 0.090 0.001 0.027 0.505 0.001 0.001 0.001 0.043 0.328 0.001 0.002 54 R 0.001 0.003 0.398 0.001 0.008 0.087 0.001 0.001 0.001 0.368 0.133 0.001 0.001 55 D 0.001 0.005 0.662 0.001 0.005 0.039 0.001 0.001 0.001 0.140 0.148 0.001 0.001 56 G 0.001 0.003 0.217 0.001 0.018 0.199 0.001 0.001 0.001 0.316 0.245 0.001 0.001 57 D 0.001 0.013 0.179 0.001 0.030 0.547 0.001 0.001 0.001 0.097 0.129 0.001 0.003 58 Q 0.001 0.010 0.057 0.001 0.020 0.824 0.001 0.001 0.002 0.033 0.046 0.002 0.005 59 R 0.001 0.001 0.028 0.001 0.008 0.945 0.001 0.001 0.001 0.007 0.008 0.001 0.001 60 T 0.001 0.001 0.008 0.001 0.014 0.957 0.001 0.001 0.001 0.003 0.013 0.001 0.001 61 A 0.002 0.002 0.006 0.001 0.012 0.941 0.001 0.001 0.001 0.004 0.027 0.001 0.003 62 L 0.001 0.001 0.007 0.001 0.020 0.935 0.001 0.001 0.001 0.003 0.031 0.001 0.001 63 L 0.001 0.002 0.013 0.001 0.090 0.830 0.001 0.001 0.001 0.012 0.046 0.001 0.003 64 S 0.001 0.001 0.013 0.001 0.126 0.747 0.001 0.001 0.001 0.013 0.093 0.002 0.003 65 L 0.002 0.002 0.016 0.001 0.185 0.628 0.001 0.001 0.001 0.013 0.146 0.001 0.005 66 F 0.002 0.010 0.068 0.001 0.051 0.550 0.001 0.002 0.003 0.062 0.240 0.005 0.007 67 E 0.003 0.020 0.136 0.002 0.034 0.358 0.001 0.001 0.002 0.087 0.342 0.003 0.011 68 Y 0.001 0.003 0.560 0.001 0.003 0.026 0.001 0.001 0.001 0.389 0.013 0.003 0.002 69 P 0.001 0.002 0.091 0.001 0.033 0.082 0.001 0.001 0.001 0.100 0.690 0.001 0.001 70 N 0.001 0.002 0.073 0.001 0.023 0.153 0.001 0.001 0.001 0.136 0.608 0.001 0.002 71 M 0.001 0.004 0.134 0.001 0.016 0.694 0.001 0.001 0.004 0.083 0.052 0.005 0.004 72 Q 0.005 0.008 0.070 0.001 0.003 0.856 0.003 0.002 0.006 0.012 0.017 0.005 0.012 73 V 0.012 0.005 0.031 0.001 0.003 0.904 0.004 0.001 0.004 0.009 0.008 0.008 0.011 74 R 0.005 0.001 0.022 0.001 0.003 0.949 0.001 0.001 0.001 0.003 0.005 0.004 0.006 75 L 0.002 0.001 0.007 0.001 0.002 0.980 0.001 0.001 0.001 0.002 0.004 0.002 0.001 76 Q 0.001 0.001 0.005 0.001 0.001 0.981 0.001 0.001 0.001 0.002 0.006 0.001 0.001 77 A 0.001 0.001 0.005 0.001 0.001 0.980 0.001 0.001 0.001 0.002 0.009 0.001 0.001 78 A 0.001 0.001 0.005 0.001 0.001 0.980 0.001 0.001 0.001 0.003 0.007 0.001 0.001 79 K 0.001 0.001 0.005 0.001 0.003 0.973 0.001 0.001 0.001 0.003 0.012 0.001 0.001 80 L 0.001 0.001 0.005 0.001 0.005 0.956 0.001 0.001 0.001 0.005 0.025 0.001 0.001 81 T 0.001 0.001 0.009 0.001 0.006 0.946 0.001 0.001 0.001 0.006 0.029 0.001 0.002 82 L 0.001 0.001 0.011 0.001 0.012 0.887 0.001 0.001 0.001 0.009 0.073 0.001 0.003 83 A 0.003 0.001 0.018 0.001 0.018 0.691 0.002 0.001 0.003 0.019 0.234 0.005 0.005 84 V 0.011 0.007 0.084 0.001 0.018 0.584 0.004 0.001 0.009 0.077 0.170 0.003 0.029 85 A 0.001 0.024 0.499 0.001 0.005 0.116 0.001 0.001 0.015 0.256 0.038 0.035 0.010 86 P 0.001 0.004 0.577 0.001 0.010 0.231 0.001 0.001 0.007 0.081 0.055 0.001 0.034 87 V 0.001 0.001 0.013 0.001 0.026 0.883 0.001 0.001 0.001 0.019 0.057 0.001 0.001 88 K 0.001 0.002 0.016 0.001 0.035 0.907 0.001 0.001 0.001 0.011 0.027 0.001 0.001 89 A 0.001 0.001 0.005 0.001 0.012 0.965 0.001 0.001 0.001 0.002 0.013 0.001 0.001 90 R 0.001 0.001 0.006 0.001 0.003 0.985 0.001 0.001 0.001 0.003 0.003 0.001 0.001 91 E 0.001 0.001 0.004 0.001 0.001 0.987 0.001 0.001 0.001 0.002 0.004 0.001 0.001 92 Q 0.001 0.001 0.002 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 93 L 0.001 0.001 0.003 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.003 0.001 0.001 94 E 0.001 0.001 0.001 0.001 0.002 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 95 A 0.001 0.001 0.001 0.001 0.002 0.987 0.001 0.001 0.001 0.001 0.009 0.001 0.001 96 I 0.001 0.001 0.002 0.001 0.005 0.976 0.001 0.001 0.001 0.002 0.015 0.001 0.001 97 V 0.001 0.002 0.010 0.001 0.009 0.906 0.001 0.001 0.001 0.011 0.061 0.001 0.001 98 S 0.001 0.001 0.028 0.001 0.035 0.615 0.001 0.001 0.001 0.022 0.296 0.001 0.001 99 S 0.001 0.001 0.065 0.001 0.046 0.352 0.001 0.001 0.001 0.086 0.446 0.001 0.001 100 K 0.001 0.013 0.220 0.001 0.048 0.135 0.001 0.001 0.004 0.206 0.366 0.003 0.003 101 W 0.001 0.037 0.459 0.001 0.032 0.091 0.001 0.001 0.010 0.175 0.173 0.003 0.016 102 F 0.001 0.024 0.557 0.003 0.010 0.025 0.001 0.001 0.013 0.308 0.038 0.016 0.006 103 P 0.001 0.020 0.576 0.002 0.037 0.029 0.001 0.001 0.006 0.173 0.142 0.002 0.012 104 Q 0.001 0.020 0.333 0.001 0.076 0.054 0.001 0.001 0.006 0.233 0.263 0.007 0.006 105 A 0.001 0.021 0.249 0.002 0.122 0.109 0.001 0.001 0.007 0.160 0.318 0.002 0.008 106 G 0.001 0.015 0.249 0.001 0.067 0.156 0.001 0.001 0.003 0.285 0.211 0.006 0.004 107 D 0.001 0.029 0.396 0.001 0.053 0.188 0.001 0.001 0.003 0.185 0.130 0.004 0.011 108 A 0.001 0.012 0.114 0.001 0.080 0.585 0.001 0.001 0.003 0.052 0.143 0.003 0.007 109 G 0.001 0.003 0.049 0.001 0.068 0.731 0.001 0.001 0.001 0.041 0.100 0.003 0.003 110 M 0.003 0.004 0.040 0.001 0.044 0.831 0.001 0.001 0.001 0.019 0.048 0.004 0.006 111 C 0.004 0.007 0.020 0.001 0.025 0.892 0.001 0.001 0.002 0.007 0.032 0.003 0.008 112 L 0.003 0.002 0.023 0.001 0.034 0.888 0.001 0.001 0.001 0.014 0.025 0.003 0.007 113 D 0.003 0.002 0.010 0.001 0.053 0.869 0.001 0.001 0.001 0.007 0.047 0.003 0.005 114 L 0.002 0.002 0.008 0.001 0.044 0.831 0.001 0.001 0.001 0.010 0.096 0.002 0.003 115 L 0.002 0.004 0.074 0.001 0.048 0.673 0.001 0.001 0.002 0.039 0.146 0.001 0.008 116 D 0.003 0.028 0.187 0.006 0.053 0.322 0.001 0.001 0.003 0.095 0.258 0.034 0.009 117 D 0.001 0.006 0.099 0.012 0.017 0.044 0.001 0.001 0.002 0.123 0.686 0.002 0.009 118 G 0.002 0.002 0.236 0.007 0.006 0.006 0.001 0.001 0.005 0.280 0.421 0.025 0.008 119 T 0.015 0.044 0.517 0.002 0.004 0.004 0.009 0.001 0.038 0.158 0.044 0.033 0.132 120 F 0.021 0.133 0.342 0.003 0.002 0.003 0.021 0.001 0.096 0.120 0.011 0.058 0.188 121 K 0.004 0.019 0.591 0.004 0.002 0.002 0.003 0.001 0.035 0.109 0.008 0.197 0.027 122 P 0.001 0.011 0.894 0.001 0.001 0.001 0.001 0.001 0.007 0.015 0.003 0.001 0.065 123 K 0.001 0.007 0.954 0.001 0.002 0.001 0.001 0.001 0.002 0.012 0.005 0.011 0.003