# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a9uA 144 7.67e-03 1yn9A 169 1.09e+00 1mun 225 1.44e+00 1mun a.96.1.2 18744 2cwyA 94 1.52e+00 1vrmA 325 1.56e+00 1uhgA 385 2.14e+00 e.1.1.1 88491 2bb6A 414 3.24e+00 1w68A 390 3.85e+00 a.25.1.2 109216 1x8vA 455 4.31e+00 1h3nA 878 4.37e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1lniA 96 5.82e+00 d.1.1.2 74046 1cuk 203 7.62e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1i4mA 108 8.42e+00 d.6.1.1 66025 1io2A 213 8.44e+00 1ekeA c.55.3.1 62612 1pylA 97 8.92e+00 d.1.1.2 104391 1zejA 293 9.11e+00 2h1nA 567 9.43e+00 1u2wA 122 1.03e+01 2f94F 350 1.05e+01 1lrv 244 1.06e+01 1lrv a.118.1.5 19146 1p7tA 731 1.09e+01 c.1.13.1 94319 1i1rB 181 1.09e+01 1i1rB a.26.1.1 61548 1sqgA 429 1.09e+01 a.79.1.3,c.66.1.38 105912,105913 1kwfA 363 1.15e+01 a.102.1.2 73078 1tw9A 206 1.20e+01 a.45.1.1,c.47.1.5 107381,107382 1mgrA 99 1.23e+01 d.1.1.2 79106 1wgzA 510 1.25e+01 2a65A 519 1.30e+01 1wwzA 159 1.32e+01 1unkA 87 1.39e+01 1cei a.28.2.1 16935 1gmjA 84 1.40e+01 h.4.8.1 65310 1jhgA 101 1.42e+01 1jhgA a.4.12.1 19009 1vkeA 133 1.43e+01 a.152.1.2 108650 1gl2C 65 1.45e+01 h.1.15.1 65280 1pmzA 86 1.47e+01 a.39.1.10 104195 1owcA 427 1.50e+01 a.103.1.1 104039 1gvhA 396 1.53e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1fpzA 212 1.55e+01 1fpzA c.45.1.1 59976 1xi1A 575 1.61e+01 1mswD 883 1.65e+01 e.8.1.3 79427 1qh8A 478 1.67e+01 1qguA c.92.2.3 35633 2cfuA 658 1.77e+01 1cipA 353 1.78e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1jk0B 345 1.83e+01 a.25.1.2 63143 1s9pA 227 1.84e+01 a.123.1.1 105384 2c5uA 375 1.91e+01 1a5t 334 2.04e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1u4bA 580 2.15e+01 c.55.3.5,e.8.1.1 107664,107665 1r1uA 106 2.15e+01 a.4.5.5 104771 2b1eA 564 2.21e+01 1w2yA 229 2.23e+01 a.204.1.1 109140 1svsA 353 2.24e+01 c.37.1.8 106051 1bed 181 2.30e+01 1fvkA c.47.1.13 90330 1wa8A 99 2.37e+01 1keaA 221 2.37e+01 a.96.1.2 68491 2cohA 202 2.50e+01 1wpaA 114 2.53e+01 1kkhA 317 2.60e+01 d.14.1.5,d.58.26.3 72645,72646 1oaa 259 2.61e+01 1oaa c.2.1.2 29829 2c3mA 1231 2.62e+01 1odoA 408 2.71e+01 a.104.1.1 92783 1colA 204 2.75e+01 1a87 f.1.1.1 43378 2ccmA 191 2.87e+01 1kb9A 431 2.88e+01 d.185.1.1,d.185.1.1 77311,77312 1w27A 714 2.89e+01 2es4D 332 2.97e+01 2c12A 439 3.00e+01 1yb3A 175 3.01e+01 1rktA 205 3.02e+01 a.4.1.9,a.121.1.1 97623,97624 1wzaA 488 3.03e+01 2fupA 168 3.35e+01 2bcqA 335 3.38e+01 1lfkA 398 3.39e+01 a.104.1.1 77926 2h58A 330 3.40e+01 2ah6A 208 3.40e+01 2fiyA 309 3.41e+01 1mp1A 111 3.41e+01 a.188.1.1 91382 1ho8A 480 3.47e+01 1ho8A a.118.1.9 61107 1f20A 435 3.57e+01 b.43.4.1,c.25.1.4 64932,64933 2a1iA 146 3.57e+01 1q2zA 120 3.67e+01 a.118.19.1 95656 1vkuA 100 3.69e+01 a.28.1.1 108690 2a9iA 113 3.75e+01 1no1A 126 3.79e+01 a.179.1.1 85913 1up7A 417 3.88e+01 2c1xA 456 3.89e+01 1vddA 228 3.97e+01 e.49.1.1 108519 1g8pA 350 3.98e+01 1g8pA c.37.1.20 60376 1af7 274 4.08e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1q35A 320 4.10e+01 c.94.1.1 95661 1mw5A 187 4.19e+01 d.259.1.1 91477 1f45B 197 4.28e+01 1f45B a.26.1.1 59642 1y7yA 74 4.40e+01 1tx4A 198 4.43e+01 1tx4A a.116.1.1 19098 1bc5A 269 4.48e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1fpoA 171 4.48e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1flcB 175 4.48e+01 1flcB h.3.1.1 45716 1l9lA 74 4.53e+01 a.64.1.1 77827 1hm6A 346 4.55e+01 1avc a.65.1.1 18147 1s8nA 205 4.58e+01 c.23.1.1 105374 2fug1 438 4.89e+01 1tadA 324 4.91e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1w5tA 412 5.07e+01 1h5uA 842 5.13e+01 1a8i c.87.1.4 60655 1l5wA 796 5.15e+01 c.87.1.4 73605 2b4jC 98 5.29e+01 1ew4A 106 5.30e+01 1ew4A d.82.2.1 40023 1xnfA 275 5.30e+01 1ustA 93 5.31e+01 a.4.5.13 99884 1r31A 428 5.32e+01 d.58.20.1,d.179.1.1 96897,96898 1x0vA 354 5.35e+01 1sumB 235 5.36e+01 a.7.12.1 106025 1elwA 118 5.39e+01 1a17 a.118.8.1 19207 1n45A 233 5.42e+01 a.132.1.1 79981 1xahA 354 5.47e+01 1nd4A 264 5.48e+01 d.144.1.6 91815 3pviA 157 5.49e+01 3pviA c.52.1.6 33300 1u55A 188 5.77e+01 d.278.1.1 107677 1vmaA 306 5.80e+01 a.24.13.1,c.37.1.10 108887,108888 2fbnA 198 5.85e+01 1ujwB 135 5.91e+01 h.4.9.1 99472 1i39A 225 5.96e+01 1ekeA c.55.3.1 61585 1xawA 140 6.03e+01 1yodA 30 6.07e+01 1pszA 303 6.18e+01 1toaA c.92.2.2 35600 2ar0A 541 6.27e+01 1vgmA 378 6.28e+01 2cjpA 328 6.29e+01 2fk8A 318 6.44e+01 1wmwA 330 6.45e+01 1z7lA 276 6.45e+01 1zhxA 438 6.47e+01 1u00A 227 6.48e+01 1wwpA 119 6.49e+01 1gweA 503 6.54e+01 e.5.1.1 70667 1yarA 233 6.55e+01 1ks8A 433 6.59e+01 a.102.1.2 77519 2cp8A 54 6.61e+01 1i52A 236 6.70e+01 1i52A c.68.1.13 61767 2gfsA 372 6.75e+01 1xqoA 256 6.83e+01 1zwyA 185 6.84e+01 1jogA 146 6.94e+01 a.24.16.2 77142 1nznA 126 6.94e+01 a.118.8.1 92382 1y9qA 192 6.99e+01 1mvcA 240 7.02e+01 a.123.1.1 79499 1s28A 132 7.10e+01 d.198.1.1 105223 1xszA 356 7.12e+01 1us7B 265 7.16e+01 a.205.1.1 99858 1uptB 60 7.25e+01 a.193.1.1 99768 1uzeA 589 7.38e+01 d.92.1.5 108174 1h16A 759 7.49e+01 c.7.1.1 76462 1o17A 345 7.50e+01 a.46.2.1,c.27.1.1 80765,80766 1zx1A 231 7.62e+01 1kr7A 110 7.64e+01 a.1.1.4 72890 1b3uA 588 7.71e+01 1b3uA a.118.1.2 19135 1khdA 345 7.73e+01 a.46.2.1,c.27.1.1 77400,77401 1skvA 69 7.74e+01 a.30.5.1 105690 1go3F 107 7.75e+01 a.60.8.2 65407 1ohuA 175 7.76e+01 f.1.4.1 93029 2fuqA 747 7.77e+01 1kl9A 182 7.85e+01 b.40.4.5 72681 1ds1A 324 7.86e+01 1drtA b.82.2.2 28127 2f6hX 419 7.86e+01 1sg0A 230 7.91e+01 1bqbA 301 7.93e+01 1hyt d.92.1.2 58962 1yewB 247 7.99e+01 1dk8A 147 7.99e+01 1agrE a.91.1.1 18548 2f23A 156 8.13e+01 2cg4A 152 8.15e+01 1q0gA 117 8.23e+01 a.24.22.1 104428 1gnwA 211 8.29e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1dowA 205 8.32e+01 1dovA a.24.9.1 16626 2bkyX 89 8.34e+01 1evyA 366 8.45e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1z3xA 238 8.52e+01 2c9wA 169 8.55e+01 1wkqA 164 8.58e+01 c.97.1.2 109393 1qynA 153 8.58e+01 d.33.1.1 96597 1nkpA 88 8.76e+01 a.38.1.1 80573 1z91A 147 8.79e+01 2b0jA 358 8.80e+01 1xrsA 516 8.81e+01 1y8aA 332 8.81e+01 1uixA 71 8.83e+01 h.1.27.1 99446 1nd9A 49 8.85e+01 a.6.1.6 85575 1hh8A 213 8.95e+01 1e96B a.118.8.1 61042 1h5wA 309 8.99e+01 e.27.1.1 65635