# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a9uA 144 3.85e-02 1fpzA 212 1.88e-01 1fpzA c.45.1.1 59976 2ah6A 208 6.45e-01 1gvhA 396 8.59e-01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1x8vA 455 9.95e-01 1cuk 203 1.09e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1oyzA 280 1.10e+00 a.118.1.16 93775 2bkyX 89 1.80e+00 1vkuA 100 2.00e+00 a.28.1.1 108690 1lrv 244 2.56e+00 1lrv a.118.1.5 19146 1gmjA 84 2.78e+00 h.4.8.1 65310 1yb3A 175 3.66e+00 1wwzA 159 4.26e+00 2a1iA 146 4.35e+00 1yn9A 169 5.50e+00 1uj6A 227 6.21e+00 c.124.1.4,d.58.40.1 107898,107899 1oaa 259 6.21e+00 1oaa c.2.1.2 29829 1k5dB 201 6.45e+00 b.55.1.3 68169 1gl2C 65 6.79e+00 h.1.15.1 65280 1xm9A 457 7.63e+00 1h3nA 878 7.65e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1g4yB 101 7.75e+00 1g4yB f.15.1.1 60251 2d5xB 146 8.07e+00 1u2wA 122 8.09e+00 1w68A 390 8.16e+00 a.25.1.2 109216 1wrrA 301 8.20e+00 1akhA 61 9.38e+00 1akhA a.4.1.1 15980 1npeA 267 1.09e+01 b.68.5.1 92032 1lniA 96 1.13e+01 d.1.1.2 74046 1wlyA 333 1.14e+01 1mp9A 198 1.19e+01 d.129.1.1,d.129.1.1 91385,91386 2cp8A 54 1.25e+01 1qo0D 196 1.27e+01 1qo0D c.23.1.3 31125 2hmzA 113 1.27e+01 2mhr a.24.4.1 16564 1k66A 149 1.33e+01 c.23.1.1 90941 1ek9A 428 1.35e+01 1ek9A f.5.1.1 43809 2fu4A 83 1.36e+01 1jhfA 202 1.38e+01 a.4.5.2,b.87.1.1 63057,63058 1aop 497 1.41e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1i4yA 114 1.53e+01 2mhr a.24.4.1 61738 1b3uA 588 1.57e+01 1b3uA a.118.1.2 19135 1a5t 334 1.57e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1gudA 288 1.58e+01 c.93.1.1 83326 1r1uA 106 1.72e+01 a.4.5.5 104771 1dk8A 147 1.74e+01 1agrE a.91.1.1 18548 1uekA 275 1.79e+01 d.14.1.5,d.58.26.5 88483,88484 1tw9A 206 1.81e+01 a.45.1.1,c.47.1.5 107381,107382 1wy0A 342 1.87e+01 1o9rA 162 1.89e+01 a.25.1.1 86706 1s6bB 119 1.91e+01 a.133.1.2 98593 1jkoC 52 1.92e+01 a.4.1.2 66809 1yxlA 119 1.96e+01 5eau 548 1.96e+01 5eat a.102.4.1,a.128.1.3 18851,19443 2b59B 172 1.99e+01 1lvaA 258 2.00e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2bl8A 103 2.02e+01 1nd9A 49 2.02e+01 a.6.1.6 85575 2g8oA 264 2.09e+01 1x1nA 524 2.17e+01 1hl2A 297 2.21e+01 c.1.10.1 83581 2gi3A 476 2.21e+01 1gjjA 168 2.24e+01 a.140.1.1,a.140.1.1 83291,83292 2g8mA 264 2.26e+01 1yge 839 2.26e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1ee4A 423 2.29e+01 1ee4A a.118.1.1 19128 2ccmA 191 2.33e+01 1quuA 250 2.33e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1k8kF 168 2.34e+01 d.198.2.1 68312 2b4jC 98 2.37e+01 1go3F 107 2.40e+01 a.60.8.2 65407 1o4sA 389 2.40e+01 c.67.1.1 86620 2cw8A 537 2.40e+01 1ois 223 2.41e+01 1a36A e.15.1.1 43267 1ewkA 490 2.41e+01 1ewkA c.93.1.1 35712 1bouB 302 2.42e+01 1bouB c.56.6.1 33859 1geeA 261 2.47e+01 c.2.1.2 90509 1mswD 883 2.48e+01 e.8.1.3 79427 2if1 126 2.48e+01 2if1 d.64.1.1 39547 1vyiA 112 2.53e+01 1qynA 153 2.54e+01 d.33.1.1 96597 1ew4A 106 2.61e+01 1ew4A d.82.2.1 40023 1s4kA 120 2.64e+01 a.35.1.6 105254 1jbkA 195 2.69e+01 c.37.1.20 71631 1acf 125 2.70e+01 3nul d.110.1.1 40882 1tuvA 114 2.78e+01 1zbqA 327 2.80e+01 1q79A 514 2.82e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1cpcB 172 2.82e+01 1qgwC a.1.1.3 15644 2bemA 170 2.89e+01 2cohA 202 2.95e+01 1zs3A 182 3.08e+01 1xewY 172 3.15e+01 2gpiA 91 3.18e+01 2fji1 399 3.25e+01 1nrlA 316 3.26e+01 a.123.1.1 92091 1wa5B 530 3.29e+01 1iq8A 582 3.33e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 2fupA 168 3.34e+01 1wqgA 185 3.34e+01 1mw5A 187 3.47e+01 d.259.1.1 91477 2ahmA 88 3.49e+01 1z91A 147 3.50e+01 1w7bA 339 3.55e+01 1wvgA 359 3.62e+01 1s28A 132 3.65e+01 d.198.1.1 105223 1ig5A 75 3.71e+01 4icb a.39.1.1 62363 1yodA 30 3.80e+01 1i1rB 181 3.90e+01 1i1rB a.26.1.1 61548 1x3mA 415 4.02e+01 1oe8A 211 4.02e+01 a.45.1.1,c.47.1.5 86905,86906 1pv0A 46 4.04e+01 a.2.12.1 95141 1k7kA 221 4.14e+01 c.51.4.1 72104 1gxyA 226 4.15e+01 d.166.1.3 76380 1gtkA 313 4.22e+01 c.94.1.1,d.50.2.1 76346,76347 1wkqA 164 4.29e+01 c.97.1.2 109393 1h2kA 349 4.44e+01 b.82.2.6 76572 1vmaA 306 4.46e+01 a.24.13.1,c.37.1.10 108887,108888 1sdoA 203 4.51e+01 c.52.1.21 98809 1pylA 97 4.53e+01 d.1.1.2 104391 1x4tA 92 4.60e+01 1pq1A 196 4.61e+01 f.1.4.1 94986 1eca 136 4.63e+01 1flp a.1.1.2 15209 2d00A 109 4.63e+01 1f20A 435 4.64e+01 b.43.4.1,c.25.1.4 64932,64933 1y8aA 332 4.75e+01 1oh0A 131 4.83e+01 d.17.4.3 87004 2cwyA 94 4.85e+01 1wkbA 810 4.89e+01 1ux8A 132 5.10e+01 1lj8A 493 5.11e+01 a.100.1.9,c.2.1.6 90392,90393 1u5tB 169 5.16e+01 a.4.5.54,a.4.5.54 107686,107687 1sx7A 164 5.20e+01 1ugjA 141 5.20e+01 b.41.1.3 107826 1skvA 69 5.27e+01 a.30.5.1 105690 2a72A 146 5.29e+01 1pyoA 167 5.32e+01 c.17.1.1 95370 2b8lA 405 5.33e+01 1jdhA 529 5.36e+01 a.118.1.1 66549 1wzdA 215 5.49e+01 1xszA 356 5.51e+01 1ka2A 499 5.53e+01 d.92.1.5 77305 2cujA 108 5.59e+01 1i27A 73 5.60e+01 1i27A a.4.5.30 61555 1x6vA 630 5.61e+01 1i4wA 353 5.71e+01 c.66.1.24 66028 1w2yA 229 5.85e+01 a.204.1.1 109140 1rwyA 109 5.96e+01 a.39.1.4 98002 1b5l 172 5.98e+01 1b5l a.26.1.3 16900 1wm1A 317 5.98e+01 c.69.1.7 109405 1b0xA 94 5.99e+01 1b4fA a.60.1.2 17933 1jl1A 155 5.99e+01 c.55.3.1 66821 1g5cA 170 6.03e+01 1g5cA c.53.2.1 60264 1s6lA 212 6.06e+01 1nzjA 298 6.06e+01 c.26.1.1 92377 1vl7A 157 6.08e+01 b.45.1.1 108732 1u02A 239 6.12e+01 c.108.1.15 107538 1y0nA 78 6.21e+01 1vddA 228 6.37e+01 e.49.1.1 108519 1x75A 132 6.48e+01 2db0A 253 6.49e+01 1v1aA 309 6.50e+01 c.72.1.1 100249 1ab8A 220 6.60e+01 1azsA d.58.29.1 39414 1w2fA 276 6.70e+01 d.143.1.3 109125 2g03A 194 6.75e+01 2a5dA 175 6.79e+01 1zy4A 303 6.79e+01 1o82A 70 6.80e+01 a.64.2.1 92630 2a5yB 549 6.80e+01 1f7cA 231 6.83e+01 1f7cA a.116.1.1 19107 1qqqA 264 6.90e+01 1bkpA d.117.1.1 40931 1zarA 282 6.97e+01 1j3mA 129 7.06e+01 d.129.7.1 103836 1x6iA 91 7.21e+01 1i4mA 108 7.22e+01 d.6.1.1 66025 1b5eA 246 7.23e+01 1b5eA d.117.1.1 41056 1mgrA 99 7.24e+01 d.1.1.2 79106 1iw0A 215 7.29e+01 a.132.1.1 83720 1wpaA 114 7.36e+01 1d8wA 426 7.37e+01 1de5A c.1.15.2 29394 1nhkL 144 7.41e+01 1npk d.58.6.1 39142 2f0aA 98 7.42e+01 1wy7A 207 7.47e+01 2fuqA 747 7.55e+01 1sg0A 230 7.63e+01 1a8rA 221 7.66e+01 1a8rA d.96.1.1 40587 2fhzA 109 7.70e+01 1l5wA 796 7.71e+01 c.87.1.4 73605 2cwxA 430 7.71e+01 1gs9A 165 7.72e+01 a.24.1.1 83313 1dcoA 104 7.82e+01 1dcpA d.74.1.1 39680 1rl0A 255 7.86e+01 1ofuX 119 7.91e+01 c.37.1.22 86976 1qnxA 209 7.93e+01 1qnxA d.111.1.1 40914 1kyqA 274 8.05e+01 c.2.1.11,e.37.1.1 73281,73282 1unkA 87 8.09e+01 1cei a.28.2.1 16935 1n4kA 381 8.15e+01 a.118.22.1,b.42.6.1 79992,79993 1ma3A 253 8.17e+01 c.31.1.5 78883 1ho8A 480 8.22e+01 1ho8A a.118.1.9 61107 1mvcA 240 8.31e+01 a.123.1.1 79499 1azsA 220 8.35e+01 1azsA d.58.29.1 39416 1gw5A 621 8.54e+01 a.118.1.10 70629 1c7qA 445 8.61e+01 2pgi c.80.1.2 35307 1ed8A 449 8.62e+01 1b8jA c.76.1.1 34988 1yemA 179 8.63e+01 1jhgA 101 8.64e+01 1jhgA a.4.12.1 19009 1ypvA 313 8.67e+01 2d69A 430 8.89e+01 1tfr 305 8.90e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1axn 323 8.97e+01 1avc a.65.1.1 18149