# TARGET T0382 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0382.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.40194 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.046 0.022 0.009 0.017 0.308 0.599 2 S 0.083 0.018 0.007 0.031 0.268 0.593 3 K 0.072 0.016 0.019 0.050 0.395 0.448 4 L 0.172 0.054 0.020 0.037 0.372 0.345 5 D 0.151 0.027 0.023 0.033 0.286 0.480 6 L 0.025 0.003 0.508 0.122 0.272 0.071 7 H 0.058 0.002 0.413 0.131 0.306 0.089 8 Q 0.159 0.011 0.322 0.148 0.261 0.100 9 M 0.158 0.051 0.013 0.088 0.156 0.534 10 T 0.058 0.020 0.002 0.058 0.040 0.823 11 T 0.001 0.001 0.005 0.983 0.003 0.008 12 Q 0.001 0.001 0.003 0.994 0.001 0.001 13 D 0.001 0.001 0.005 0.994 0.001 0.001 14 L 0.001 0.001 0.002 0.997 0.001 0.001 15 V 0.001 0.001 0.001 0.999 0.001 0.001 16 A 0.001 0.001 0.001 0.999 0.001 0.001 17 L 0.001 0.001 0.001 0.999 0.001 0.001 18 F 0.001 0.001 0.001 0.998 0.001 0.001 19 A 0.001 0.001 0.002 0.997 0.001 0.001 20 K 0.001 0.001 0.002 0.997 0.001 0.001 21 V 0.001 0.001 0.003 0.994 0.002 0.001 22 T 0.001 0.001 0.005 0.979 0.005 0.010 23 V 0.001 0.001 0.008 0.967 0.009 0.014 24 E 0.003 0.001 0.011 0.947 0.015 0.023 25 Q 0.003 0.001 0.019 0.908 0.025 0.043 26 D 0.003 0.001 0.034 0.887 0.032 0.042 27 D 0.004 0.001 0.056 0.865 0.043 0.030 28 A 0.006 0.001 0.061 0.877 0.036 0.018 29 L 0.011 0.004 0.046 0.839 0.058 0.041 30 L 0.018 0.006 0.057 0.746 0.088 0.085 31 G 0.013 0.004 0.070 0.673 0.119 0.122 32 N 0.010 0.004 0.043 0.598 0.158 0.188 33 Q 0.005 0.002 0.032 0.725 0.076 0.160 34 I 0.001 0.001 0.007 0.957 0.013 0.020 35 S 0.001 0.001 0.004 0.979 0.008 0.008 36 R 0.001 0.001 0.003 0.989 0.003 0.003 37 F 0.001 0.001 0.002 0.994 0.002 0.002 38 N 0.001 0.001 0.003 0.991 0.003 0.003 39 R 0.001 0.001 0.003 0.993 0.002 0.003 40 L 0.001 0.001 0.001 0.996 0.001 0.002 41 F 0.001 0.001 0.001 0.998 0.001 0.001 42 G 0.001 0.001 0.001 0.998 0.001 0.001 43 V 0.001 0.001 0.001 0.998 0.001 0.001 44 M 0.001 0.001 0.001 0.998 0.001 0.001 45 A 0.001 0.001 0.001 0.996 0.001 0.001 46 E 0.001 0.001 0.002 0.994 0.002 0.002 47 I 0.001 0.001 0.002 0.989 0.003 0.006 48 A 0.001 0.001 0.003 0.990 0.003 0.004 49 D 0.001 0.001 0.003 0.993 0.002 0.001 50 E 0.001 0.001 0.004 0.990 0.003 0.003 51 L 0.001 0.001 0.007 0.979 0.007 0.007 52 K 0.001 0.001 0.011 0.952 0.018 0.017 53 A 0.001 0.001 0.011 0.867 0.046 0.073 54 R 0.001 0.005 0.011 0.558 0.216 0.208 55 D 0.001 0.004 0.007 0.191 0.480 0.317 56 G 0.001 0.002 0.015 0.201 0.559 0.223 57 D 0.003 0.006 0.014 0.300 0.380 0.296 58 Q 0.001 0.001 0.007 0.953 0.022 0.015 59 R 0.003 0.001 0.004 0.960 0.014 0.018 60 T 0.004 0.001 0.005 0.971 0.008 0.010 61 A 0.007 0.001 0.009 0.966 0.010 0.007 62 L 0.007 0.001 0.010 0.964 0.011 0.007 63 L 0.006 0.001 0.018 0.951 0.015 0.008 64 S 0.005 0.001 0.029 0.928 0.022 0.014 65 L 0.009 0.002 0.088 0.806 0.068 0.026 66 F 0.019 0.006 0.087 0.709 0.123 0.057 67 E 0.017 0.007 0.036 0.561 0.167 0.212 68 Y 0.008 0.015 0.016 0.124 0.720 0.117 69 P 0.004 0.005 0.022 0.102 0.769 0.098 70 N 0.006 0.002 0.025 0.262 0.599 0.106 71 M 0.025 0.006 0.016 0.777 0.153 0.024 72 Q 0.014 0.002 0.004 0.961 0.007 0.012 73 V 0.017 0.002 0.005 0.969 0.003 0.004 74 R 0.010 0.001 0.005 0.977 0.003 0.005 75 L 0.003 0.001 0.003 0.987 0.003 0.004 76 Q 0.002 0.001 0.005 0.982 0.005 0.004 77 A 0.001 0.001 0.005 0.990 0.003 0.001 78 A 0.001 0.001 0.005 0.988 0.005 0.001 79 K 0.002 0.001 0.007 0.979 0.010 0.001 80 L 0.003 0.001 0.006 0.980 0.009 0.002 81 T 0.003 0.001 0.004 0.975 0.007 0.010 82 L 0.010 0.001 0.013 0.931 0.016 0.030 83 A 0.024 0.002 0.012 0.912 0.018 0.032 84 V 0.030 0.005 0.011 0.781 0.030 0.143 85 A 0.014 0.007 0.004 0.233 0.069 0.672 86 P 0.006 0.003 0.003 0.145 0.081 0.762 87 V 0.001 0.001 0.014 0.949 0.019 0.017 88 K 0.003 0.001 0.021 0.936 0.026 0.013 89 A 0.001 0.001 0.014 0.969 0.010 0.005 90 R 0.003 0.001 0.007 0.969 0.010 0.011 91 E 0.002 0.001 0.006 0.981 0.006 0.004 92 Q 0.001 0.001 0.004 0.987 0.004 0.003 93 L 0.001 0.001 0.002 0.994 0.002 0.002 94 E 0.001 0.001 0.002 0.994 0.002 0.001 95 A 0.001 0.001 0.004 0.991 0.003 0.002 96 I 0.001 0.001 0.006 0.974 0.010 0.008 97 V 0.001 0.001 0.013 0.939 0.024 0.022 98 S 0.002 0.002 0.026 0.846 0.058 0.067 99 S 0.004 0.005 0.057 0.557 0.150 0.227 100 K 0.007 0.013 0.039 0.091 0.304 0.546 101 W 0.020 0.034 0.034 0.052 0.397 0.464 102 F 0.018 0.019 0.017 0.029 0.493 0.423 103 P 0.013 0.024 0.032 0.047 0.441 0.443 104 Q 0.018 0.017 0.044 0.092 0.483 0.346 105 A 0.019 0.018 0.046 0.253 0.441 0.223 106 G 0.017 0.026 0.031 0.407 0.284 0.234 107 D 0.024 0.028 0.027 0.731 0.081 0.109 108 A 0.006 0.002 0.019 0.933 0.026 0.014 109 G 0.005 0.001 0.027 0.921 0.028 0.017 110 M 0.008 0.002 0.033 0.916 0.023 0.018 111 C 0.005 0.002 0.013 0.955 0.011 0.014 112 L 0.003 0.001 0.009 0.961 0.013 0.014 113 D 0.002 0.001 0.013 0.962 0.014 0.008 114 L 0.002 0.001 0.023 0.946 0.022 0.007 115 L 0.002 0.001 0.050 0.898 0.043 0.006 116 D 0.002 0.002 0.040 0.889 0.055 0.012 117 D 0.003 0.002 0.026 0.738 0.135 0.096 118 G 0.006 0.003 0.009 0.025 0.258 0.699 119 T 0.056 0.034 0.011 0.006 0.245 0.648 120 F 0.157 0.070 0.016 0.004 0.300 0.453 121 K 0.118 0.022 0.011 0.005 0.292 0.551 122 P 0.069 0.006 0.006 0.004 0.227 0.687 123 K 0.089 0.013 0.023 0.018 0.262 0.595