# TARGET T0382 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment /projects/compbio/experiments/protein-predict/casp7/T0382/T0382.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.40194 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.094 0.042 0.190 0.218 0.041 0.069 0.067 0.006 0.012 0.011 0.035 0.033 0.112 0.024 0.005 0.038 2 S 0.038 0.091 0.164 0.204 0.009 0.153 0.010 0.060 0.004 0.004 0.051 0.064 0.102 0.002 0.032 0.010 3 K 0.016 0.087 0.085 0.162 0.055 0.126 0.027 0.010 0.043 0.021 0.134 0.041 0.096 0.025 0.004 0.068 4 L 0.080 0.154 0.132 0.314 0.005 0.023 0.007 0.043 0.004 0.002 0.036 0.091 0.068 0.002 0.031 0.007 5 D 0.006 0.017 0.052 0.044 0.013 0.551 0.011 0.006 0.012 0.026 0.021 0.055 0.153 0.006 0.004 0.022 6 L 0.017 0.022 0.016 0.024 0.006 0.059 0.011 0.011 0.001 0.001 0.657 0.027 0.126 0.012 0.006 0.004 7 H 0.004 0.130 0.024 0.030 0.001 0.011 0.007 0.011 0.008 0.002 0.018 0.645 0.069 0.003 0.027 0.009 8 Q 0.034 0.033 0.159 0.111 0.001 0.005 0.009 0.002 0.022 0.002 0.007 0.010 0.181 0.005 0.021 0.399 9 M 0.041 0.010 0.789 0.096 0.001 0.004 0.003 0.001 0.001 0.001 0.001 0.002 0.032 0.001 0.002 0.018 10 T 0.007 0.004 0.038 0.020 0.004 0.842 0.002 0.001 0.001 0.004 0.004 0.007 0.066 0.001 0.001 0.001 11 T 0.001 0.001 0.001 0.001 0.001 0.148 0.001 0.001 0.001 0.001 0.810 0.005 0.033 0.001 0.001 0.001 12 Q 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.907 0.040 0.001 0.001 0.001 13 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.094 0.900 0.001 0.001 0.001 14 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.005 0.987 0.001 0.001 0.001 15 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.979 0.001 0.001 0.001 16 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.998 0.001 0.001 0.001 17 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.998 0.001 0.001 0.001 18 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 19 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 20 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.002 21 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.991 0.001 0.001 0.001 22 T 0.001 0.001 0.004 0.003 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.966 0.004 0.001 0.015 23 V 0.001 0.008 0.003 0.009 0.001 0.006 0.002 0.001 0.001 0.001 0.004 0.007 0.955 0.001 0.003 0.002 24 E 0.002 0.010 0.009 0.020 0.002 0.023 0.005 0.001 0.001 0.001 0.007 0.021 0.826 0.023 0.003 0.046 25 Q 0.002 0.002 0.006 0.003 0.002 0.026 0.012 0.002 0.001 0.001 0.031 0.010 0.868 0.015 0.016 0.003 26 D 0.001 0.017 0.010 0.003 0.001 0.010 0.004 0.007 0.001 0.001 0.050 0.058 0.794 0.010 0.024 0.011 27 D 0.004 0.003 0.003 0.005 0.001 0.004 0.002 0.001 0.002 0.001 0.016 0.046 0.872 0.003 0.015 0.022 28 A 0.011 0.002 0.023 0.003 0.001 0.003 0.005 0.001 0.001 0.001 0.012 0.019 0.869 0.004 0.003 0.045 29 L 0.007 0.004 0.055 0.008 0.003 0.010 0.038 0.001 0.001 0.001 0.008 0.023 0.788 0.038 0.004 0.012 30 L 0.002 0.015 0.028 0.011 0.002 0.027 0.015 0.010 0.001 0.001 0.009 0.015 0.809 0.009 0.036 0.011 31 G 0.003 0.007 0.018 0.017 0.002 0.019 0.013 0.006 0.006 0.006 0.067 0.014 0.723 0.015 0.013 0.073 32 N 0.020 0.009 0.024 0.011 0.001 0.014 0.004 0.005 0.001 0.001 0.047 0.107 0.730 0.002 0.013 0.010 33 Q 0.005 0.008 0.011 0.006 0.001 0.033 0.005 0.001 0.001 0.001 0.038 0.070 0.790 0.010 0.002 0.018 34 I 0.003 0.009 0.014 0.007 0.001 0.008 0.007 0.001 0.001 0.001 0.039 0.050 0.842 0.004 0.010 0.004 35 S 0.001 0.004 0.010 0.006 0.001 0.011 0.005 0.001 0.001 0.001 0.011 0.051 0.885 0.002 0.005 0.007 36 R 0.004 0.005 0.008 0.008 0.001 0.010 0.006 0.002 0.001 0.001 0.025 0.020 0.868 0.013 0.004 0.023 37 F 0.004 0.007 0.018 0.006 0.001 0.012 0.018 0.002 0.001 0.001 0.017 0.038 0.819 0.026 0.019 0.013 38 N 0.001 0.003 0.014 0.003 0.001 0.009 0.005 0.002 0.001 0.001 0.013 0.021 0.896 0.001 0.020 0.010 39 R 0.005 0.003 0.004 0.003 0.001 0.008 0.001 0.001 0.001 0.001 0.046 0.024 0.878 0.003 0.001 0.021 40 L 0.006 0.004 0.004 0.001 0.001 0.009 0.013 0.001 0.001 0.001 0.026 0.104 0.786 0.036 0.002 0.004 41 F 0.001 0.001 0.009 0.001 0.001 0.003 0.002 0.002 0.001 0.001 0.013 0.020 0.907 0.001 0.037 0.003 42 G 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.016 0.960 0.001 0.001 0.008 43 V 0.004 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.006 0.038 0.940 0.001 0.001 0.001 44 M 0.001 0.001 0.002 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.010 0.010 0.971 0.001 0.001 0.001 45 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.013 0.980 0.001 0.001 0.001 46 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.986 0.001 0.001 0.002 47 I 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.003 0.987 0.002 0.001 0.001 48 A 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.003 0.002 0.984 0.001 0.004 0.001 49 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.006 0.983 0.001 0.002 0.002 50 E 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.011 0.903 0.033 0.002 0.040 51 L 0.001 0.001 0.030 0.001 0.001 0.001 0.019 0.001 0.001 0.001 0.002 0.003 0.907 0.011 0.019 0.005 52 K 0.001 0.010 0.050 0.005 0.001 0.002 0.023 0.001 0.001 0.001 0.003 0.004 0.826 0.010 0.014 0.051 53 A 0.025 0.008 0.043 0.041 0.006 0.017 0.030 0.003 0.004 0.002 0.006 0.007 0.599 0.057 0.017 0.136 54 R 0.005 0.006 0.059 0.004 0.084 0.006 0.351 0.002 0.001 0.001 0.016 0.003 0.086 0.354 0.010 0.013 55 D 0.003 0.020 0.014 0.004 0.002 0.036 0.005 0.305 0.001 0.002 0.022 0.016 0.095 0.004 0.460 0.011 56 G 0.012 0.013 0.011 0.005 0.003 0.012 0.009 0.005 0.137 0.194 0.165 0.054 0.160 0.012 0.004 0.206 57 D 0.245 0.011 0.008 0.003 0.001 0.026 0.001 0.005 0.001 0.002 0.054 0.455 0.174 0.001 0.013 0.002 58 Q 0.004 0.007 0.038 0.003 0.001 0.018 0.001 0.001 0.003 0.002 0.279 0.100 0.524 0.001 0.001 0.018 59 R 0.002 0.002 0.003 0.003 0.001 0.016 0.001 0.001 0.001 0.001 0.027 0.417 0.529 0.001 0.001 0.001 60 T 0.001 0.003 0.003 0.005 0.001 0.003 0.001 0.001 0.001 0.001 0.012 0.045 0.928 0.001 0.001 0.001 61 A 0.001 0.001 0.001 0.003 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.016 0.974 0.001 0.001 0.001 62 L 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.004 0.988 0.001 0.001 0.001 63 L 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.984 0.001 0.001 0.001 64 S 0.001 0.001 0.001 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.973 0.006 0.002 0.006 65 L 0.002 0.002 0.011 0.009 0.001 0.002 0.023 0.001 0.001 0.001 0.004 0.003 0.831 0.055 0.016 0.042 66 F 0.004 0.014 0.059 0.016 0.002 0.006 0.041 0.002 0.001 0.001 0.004 0.006 0.690 0.027 0.041 0.088 67 E 0.020 0.048 0.180 0.061 0.005 0.006 0.041 0.006 0.004 0.003 0.004 0.004 0.244 0.049 0.032 0.294 68 Y 0.038 0.013 0.091 0.022 0.070 0.296 0.165 0.007 0.002 0.011 0.016 0.010 0.193 0.026 0.020 0.021 69 P 0.009 0.056 0.024 0.008 0.003 0.031 0.006 0.080 0.002 0.003 0.669 0.013 0.064 0.006 0.019 0.009 70 N 0.015 0.100 0.009 0.026 0.001 0.018 0.002 0.005 0.076 0.009 0.033 0.635 0.039 0.002 0.010 0.020 71 M 0.152 0.024 0.190 0.041 0.001 0.020 0.005 0.002 0.012 0.003 0.066 0.100 0.329 0.001 0.007 0.047 72 Q 0.030 0.050 0.400 0.087 0.001 0.036 0.004 0.001 0.001 0.001 0.016 0.111 0.251 0.001 0.001 0.010 73 V 0.007 0.013 0.086 0.200 0.002 0.089 0.001 0.002 0.001 0.001 0.070 0.037 0.490 0.001 0.001 0.003 74 R 0.001 0.018 0.022 0.092 0.007 0.079 0.002 0.001 0.001 0.001 0.055 0.063 0.657 0.001 0.001 0.001 75 L 0.001 0.001 0.001 0.016 0.001 0.049 0.001 0.001 0.001 0.001 0.030 0.036 0.863 0.001 0.001 0.001 76 Q 0.001 0.006 0.001 0.006 0.001 0.014 0.001 0.001 0.001 0.001 0.030 0.070 0.872 0.001 0.001 0.001 77 A 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.012 0.036 0.945 0.001 0.001 0.001 78 A 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.003 0.012 0.981 0.001 0.001 0.001 79 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.990 0.001 0.001 0.001 80 L 0.001 0.001 0.001 0.004 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.005 0.982 0.001 0.001 0.002 81 T 0.001 0.001 0.003 0.003 0.001 0.004 0.005 0.001 0.001 0.001 0.002 0.002 0.957 0.012 0.003 0.007 82 L 0.001 0.005 0.005 0.005 0.001 0.003 0.003 0.001 0.001 0.001 0.011 0.006 0.930 0.007 0.016 0.007 83 A 0.003 0.012 0.026 0.022 0.001 0.002 0.010 0.001 0.001 0.001 0.005 0.010 0.726 0.032 0.017 0.131 84 V 0.028 0.019 0.271 0.065 0.001 0.002 0.019 0.001 0.001 0.001 0.001 0.003 0.389 0.006 0.038 0.155 85 A 0.015 0.013 0.427 0.081 0.002 0.105 0.012 0.002 0.001 0.003 0.005 0.004 0.283 0.002 0.005 0.041 86 P 0.005 0.005 0.006 0.006 0.004 0.761 0.003 0.001 0.001 0.001 0.090 0.007 0.109 0.001 0.001 0.001 87 V 0.001 0.132 0.002 0.010 0.001 0.009 0.001 0.004 0.001 0.001 0.577 0.200 0.063 0.001 0.001 0.001 88 K 0.001 0.005 0.003 0.006 0.001 0.011 0.001 0.001 0.002 0.001 0.009 0.676 0.281 0.001 0.001 0.003 89 A 0.001 0.001 0.004 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.032 0.010 0.941 0.001 0.001 0.001 90 R 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.029 0.080 0.884 0.001 0.001 0.001 91 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.024 0.971 0.001 0.001 0.001 92 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.993 0.001 0.001 0.001 93 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 94 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.995 0.001 0.001 0.001 95 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.992 0.004 0.001 0.002 96 I 0.001 0.001 0.009 0.001 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.915 0.028 0.011 0.019 97 V 0.001 0.002 0.023 0.002 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.853 0.017 0.039 0.038 98 S 0.007 0.005 0.035 0.005 0.001 0.012 0.021 0.002 0.001 0.001 0.005 0.003 0.712 0.047 0.028 0.115 99 S 0.023 0.018 0.028 0.005 0.002 0.043 0.040 0.003 0.001 0.002 0.108 0.017 0.578 0.054 0.038 0.040 100 K 0.019 0.124 0.083 0.010 0.001 0.016 0.025 0.011 0.003 0.001 0.123 0.085 0.334 0.025 0.067 0.073 101 W 0.038 0.118 0.225 0.060 0.001 0.008 0.017 0.003 0.023 0.002 0.010 0.081 0.183 0.011 0.031 0.189 102 F 0.042 0.011 0.387 0.046 0.014 0.062 0.122 0.002 0.002 0.003 0.010 0.014 0.240 0.009 0.006 0.029 103 P 0.014 0.052 0.134 0.065 0.017 0.251 0.015 0.049 0.002 0.003 0.114 0.023 0.242 0.003 0.009 0.009 104 Q 0.005 0.046 0.009 0.043 0.160 0.038 0.064 0.013 0.023 0.013 0.189 0.096 0.064 0.222 0.002 0.013 105 A 0.014 0.037 0.040 0.037 0.008 0.009 0.016 0.126 0.007 0.002 0.025 0.076 0.105 0.008 0.483 0.009 106 G 0.008 0.008 0.095 0.029 0.002 0.016 0.006 0.014 0.078 0.177 0.021 0.032 0.227 0.003 0.012 0.274 107 D 0.278 0.011 0.014 0.016 0.029 0.129 0.033 0.004 0.003 0.010 0.073 0.099 0.272 0.019 0.002 0.009 108 A 0.007 0.012 0.023 0.010 0.002 0.046 0.002 0.074 0.001 0.001 0.371 0.099 0.314 0.003 0.033 0.003 109 G 0.001 0.010 0.008 0.015 0.001 0.012 0.001 0.002 0.011 0.010 0.042 0.467 0.406 0.001 0.004 0.011 110 M 0.012 0.002 0.003 0.011 0.001 0.008 0.001 0.001 0.001 0.001 0.025 0.040 0.893 0.001 0.001 0.003 111 C 0.001 0.006 0.011 0.005 0.001 0.013 0.002 0.001 0.001 0.001 0.009 0.048 0.901 0.001 0.001 0.002 112 L 0.001 0.002 0.006 0.007 0.001 0.013 0.006 0.001 0.001 0.001 0.005 0.025 0.932 0.001 0.001 0.001 113 D 0.001 0.007 0.005 0.012 0.001 0.005 0.002 0.001 0.001 0.001 0.008 0.007 0.940 0.003 0.004 0.005 114 L 0.002 0.006 0.005 0.015 0.001 0.005 0.019 0.001 0.001 0.001 0.004 0.014 0.842 0.029 0.005 0.052 115 L 0.004 0.004 0.063 0.007 0.003 0.011 0.032 0.002 0.001 0.001 0.006 0.006 0.811 0.010 0.028 0.013 116 D 0.001 0.004 0.010 0.002 0.020 0.003 0.112 0.003 0.001 0.001 0.008 0.001 0.071 0.737 0.005 0.021 117 D 0.006 0.016 0.011 0.013 0.001 0.001 0.003 0.045 0.003 0.001 0.003 0.004 0.024 0.003 0.859 0.009 118 G 0.015 0.005 0.059 0.013 0.001 0.006 0.010 0.001 0.082 0.050 0.004 0.003 0.041 0.003 0.004 0.703 119 T 0.821 0.025 0.068 0.056 0.001 0.002 0.004 0.001 0.001 0.001 0.002 0.004 0.008 0.001 0.001 0.006 120 F 0.014 0.027 0.514 0.395 0.003 0.018 0.004 0.001 0.002 0.001 0.002 0.004 0.007 0.001 0.001 0.007 121 K 0.006 0.019 0.144 0.737 0.020 0.056 0.003 0.001 0.001 0.001 0.002 0.001 0.005 0.001 0.001 0.002 122 P 0.004 0.019 0.015 0.306 0.326 0.259 0.009 0.006 0.001 0.003 0.039 0.004 0.005 0.003 0.001 0.001 123 K 0.004 0.231 0.017 0.203 0.106 0.081 0.008 0.192 0.008 0.004 0.085 0.040 0.006 0.006 0.008 0.001