# List of top-scoring protein chains for T0382.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d1rA 116 4.20e-01 1d1rA d.64.1.1 39548 2a5dB 193 3.95e+00 1s5eA 240 4.05e+00 d.166.1.1 98547 1s5dA 240 4.17e+00 d.166.1.1 98541 1favA 79 4.24e+00 1envA h.3.2.1 45728 1xtcA 194 4.55e+00 1lt3A d.166.1.1 42259 1rgoA 70 5.12e+00 g.66.1.1,g.66.1.1 97444,97445 1envA 123 5.16e+00 1envA h.3.2.1 45726 1r6aA 295 6.12e+00 c.66.1.25 104817 1l9kA 305 6.21e+00 c.66.1.25 84569 1uq5A 263 7.33e+00 d.165.1.1 99778 1k66A 149 7.71e+00 c.23.1.1 90941 1ueyA 127 1.31e+01 b.1.2.1 99285 1gl2C 65 1.32e+01 h.1.15.1 65280 1h5zA 455 1.33e+01 a.104.1.1 90622 1x8vA 455 1.34e+01 1ahc 246 1.38e+01 1mrj d.165.1.1 42184 1h3mA 235 1.41e+01 c.68.1.13 90600 1qo0D 196 1.46e+01 1qo0D c.23.1.3 31125 1u13A 455 1.53e+01 a.104.1.1 107578 2ah6A 208 1.67e+01 1i52A 236 1.71e+01 1i52A c.68.1.13 61767 1vgtA 238 1.72e+01 c.68.1.13 100604 1mom 246 1.73e+01 1mrj d.165.1.1 42188 1iyjB 817 1.90e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1te4A 131 1.96e+01 a.118.1.16 106794 1bdfA 235 2.50e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1gvhA 396 2.57e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1dk5A 322 2.80e+01 1dk5A a.65.1.1 18192 1obs 267 3.34e+01 1mrj d.165.1.1 42213 1yleA 342 3.38e+01 1ift 263 3.40e+01 1mrj d.165.1.1 42211 2a9uA 144 3.40e+01 1uq4A 263 3.42e+01 d.165.1.1 99777 1br5A 267 3.44e+01 1mrj d.165.1.1 42217 1zb0A 268 3.45e+01 1j1mA 268 3.61e+01 d.165.1.1 90767 1gmjA 84 3.65e+01 h.4.8.1 65310 2bkyX 89 3.87e+01 2go55 124 3.99e+01 1iqcA 308 4.14e+01 a.3.1.5,a.3.1.5 66266,66267 1nd9A 49 4.23e+01 a.6.1.6 85575 1ucjA 96 4.33e+01 d.1.1.2 99177 1wwzA 159 4.41e+01 1l9uC 1118 4.47e+01 i.8.1.1 73750 1ynjC 1119 4.47e+01 1i6vC 1118 4.47e+01 e.29.1.1 61856 1hqmC 1119 4.47e+01 i.8.1.1 45974 1gmpA 96 4.54e+01 1rgeA d.1.1.2 36036 1ul5A 88 4.55e+01 g.72.1.1 99539 2benA 170 4.59e+01 1mrg 263 4.64e+01 1mrj d.165.1.1 42183 2bemA 170 4.68e+01 1uclA 96 4.69e+01 d.1.1.2 99181 1uckA 96 4.71e+01 d.1.1.2 99179 1uciA 96 4.81e+01 d.1.1.2 99175 1t2hA 96 4.84e+01 1lniA 96 4.84e+01 d.1.1.2 74046 1ynvX 96 4.86e+01 1i70A 96 4.87e+01 d.1.1.2 61862 1boxA 96 5.03e+01 1rgeA d.1.1.2 36038 1yn9A 169 5.05e+01 1t2iA 96 5.13e+01 1cbg 490 5.15e+01 1e70M c.1.8.4 28933 1i8vA 96 5.20e+01 d.1.1.2 61985 1ohhH 84 5.29e+01 h.4.8.1 87034 1vkuA 100 5.57e+01 a.28.1.1 108690 1mkhA 107 5.62e+01 b.40.4.4 79238 1sg0A 230 5.68e+01 1zx1A 231 5.70e+01 1ois 223 5.71e+01 1a36A e.15.1.1 43267 1mrh 263 5.78e+01 1mrj d.165.1.1 42186 2bzsA 236 5.80e+01 2fe8A 315 5.85e+01 1nd7A 374 5.98e+01 d.148.1.1 91817 2gbcA 730 6.04e+01 2gfqA 298 6.08e+01 1zbdB 134 6.08e+01 1zbdB g.50.1.1 45359 1yh2A 175 6.14e+01 1wrrA 301 6.26e+01 2fubA 301 6.26e+01 1zvyA 136 6.49e+01 1lj8A 493 6.66e+01 a.100.1.9,c.2.1.6 90392,90393 1sq6A 253 6.67e+01 c.56.2.1 98964 2bsxA 253 6.80e+01 2b2nA 344 7.01e+01 1odd 118 7.02e+01 1opc a.4.6.1 16232 1cwuA 296 7.17e+01 1enp c.2.1.2 29908 1n3tA 221 7.22e+01 d.96.1.1 91593 1h9fA 57 7.27e+01 1h9fA a.140.1.1 60826 2cohA 202 7.30e+01 1q1gA 276 7.33e+01 c.56.2.1 95574 1kg6A 225 7.57e+01 a.96.1.2 77382 1w5tA 412 7.78e+01 1d7oA 297 7.81e+01 1enp c.2.1.2 29907 1wljA 189 7.86e+01 1goa 156 7.90e+01 2rn2 c.55.3.1 33564 2f57A 317 7.92e+01 2d69A 430 7.95e+01 1t0bA 252 8.01e+01 c.23.16.6 106199 1eno 312 8.09e+01 1enp c.2.1.2 29905 1u1iA 392 8.19e+01 c.2.1.3,d.81.1.3 107582,107583 1chuA 540 8.40e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1knrA 540 8.41e+01 a.7.3.1,c.3.1.4,d.168.1.1 72788,72789,72790 1hrbA 113 8.59e+01 1uekA 275 8.83e+01 d.14.1.5,d.58.26.5 88483,88484 1hdmA 201 8.92e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 1mswD 883 8.97e+01 e.8.1.3 79427