# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a9uA 144 7.03e-02 1fpzA 212 2.60e-01 1fpzA c.45.1.1 59976 2ah6A 208 7.43e-01 1oyzA 280 1.45e+00 a.118.1.16 93775 1h5zA 455 1.64e+00 a.104.1.1 90622 1u13A 455 1.69e+00 a.104.1.1 107578 1gvhA 396 1.88e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1x8vA 455 2.31e+00 1vkuA 100 2.59e+00 a.28.1.1 108690 2bkyX 89 2.59e+00 1cuk 203 2.83e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1e9xA 455 2.91e+00 1ea1A a.104.1.1 18969 1lrv 244 3.75e+00 1lrv a.118.1.5 19146 1yb3A 175 3.98e+00 1udvA 89 4.64e+00 d.68.6.1 99224 1gmjA 84 4.97e+00 h.4.8.1 65310 1qlnA 883 6.10e+00 1cezA e.8.1.3 43111 1uj6A 227 6.44e+00 c.124.1.4,d.58.40.1 107898,107899 1wwzA 159 6.57e+00 1k5dB 201 7.67e+00 b.55.1.3 68169 1xm9A 457 7.84e+00 1oaa 259 7.86e+00 1oaa c.2.1.2 29829 1yn9A 169 8.45e+00 2a1iA 146 8.71e+00 1r4uA 301 9.09e+00 d.96.1.4,d.96.1.4 97047,97048 1yucA 255 9.21e+00 1wrrA 301 9.24e+00 1uox 296 1.00e+01 1uox 1zq4A 693 1.00e+01 1h3nA 878 1.03e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1akhA 61 1.07e+01 1akhA a.4.1.1 15980 1bouB 302 1.10e+01 1bouB c.56.6.1 33859 2hmzA 113 1.10e+01 2mhr a.24.4.1 16564 1pxwA 128 1.11e+01 d.79.3.1 95305 1jhfA 202 1.18e+01 a.4.5.2,b.87.1.1 63057,63058 1lniA 96 1.27e+01 d.1.1.2 74046 1hl2A 297 1.29e+01 c.1.10.1 83581 2hmqA 113 1.29e+01 2mhr a.24.4.1 16568 1u2wA 122 1.37e+01 1mp9A 198 1.46e+01 d.129.1.1,d.129.1.1 91385,91386 1g4yB 101 1.57e+01 1g4yB f.15.1.1 60251 1npeA 267 1.61e+01 b.68.5.1 92032 2d5xB 146 1.63e+01 1nal1 297 1.69e+01 1nal3 2bl8A 103 1.70e+01 1iwhB 146 1.74e+01 a.1.1.2 76883 1aop 497 1.75e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1w68A 390 1.78e+01 a.25.1.2 109216 1x3mA 415 1.80e+01 1oe8A 211 1.81e+01 a.45.1.1,c.47.1.5 86905,86906 1ek9A 428 1.85e+01 1ek9A f.5.1.1 43809 1pk5A 248 1.87e+01 a.123.1.1 88139 1wlyA 333 1.92e+01 1qgrA 876 1.97e+01 1qgrA a.118.1.1 19119 1k8kF 168 1.98e+01 d.198.2.1 68312 1b3uA 588 2.04e+01 1b3uA a.118.1.2 19135 2ccmA 191 2.08e+01 1uekA 275 2.10e+01 d.14.1.5,d.58.26.5 88483,88484 1o4sA 389 2.11e+01 c.67.1.1 86620 1r1uA 106 2.17e+01 a.4.5.5 104771 1ew4A 106 2.18e+01 1ew4A d.82.2.1 40023 1a5t 334 2.21e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1i4yA 114 2.34e+01 2mhr a.24.4.1 61738 1rgeA 96 2.45e+01 1rgeA d.1.1.2 36028 1qo0D 196 2.47e+01 1qo0D c.23.1.3 31125 1vmaA 306 2.51e+01 a.24.13.1,c.37.1.10 108887,108888 1o9rA 162 2.55e+01 a.25.1.1 86706 2bemA 170 2.62e+01 2cp8A 54 2.65e+01 2fu4A 83 2.75e+01 1x1nA 524 2.78e+01 1gcoA 261 2.83e+01 1ybvA c.2.1.2 29884 1nd9A 49 2.88e+01 a.6.1.6 85575 1xsm 390 2.90e+01 1xsm a.25.1.2 16804 2b59B 172 2.94e+01 1gudA 288 3.01e+01 c.93.1.1 83326 1geeA 261 3.01e+01 c.2.1.2 90509 2cw8A 537 3.05e+01 1k66A 149 3.12e+01 c.23.1.1 90941 2gi3A 476 3.12e+01 1gl2C 65 3.14e+01 h.1.15.1 65280 1ee4A 423 3.26e+01 1ee4A a.118.1.1 19128 1zs3A 182 3.27e+01 1tw9A 206 3.39e+01 a.45.1.1,c.47.1.5 107381,107382 1a8rA 221 3.40e+01 1a8rA d.96.1.1 40587 1lvaA 258 3.47e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1xewY 172 3.49e+01 1i1rB 181 3.51e+01 1i1rB a.26.1.1 61548 1ugjA 141 3.52e+01 b.41.1.3 107826 1egaA 301 3.54e+01 1egaA c.37.1.8,d.52.3.1 32150,38836 1acf 125 3.57e+01 3nul d.110.1.1 40882 5eau 548 3.64e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1y74B 50 3.67e+01 1ab4 477 3.72e+01 1ab4 e.11.1.1 43251 1h0oA 390 3.72e+01 a.25.1.2 70845 1jbkA 195 3.80e+01 c.37.1.20 71631 1wy0A 342 3.83e+01 1dk8A 147 3.88e+01 1agrE a.91.1.1 18548 1i4wA 353 3.88e+01 c.66.1.24 66028 1hg4A 279 3.92e+01 1lbd a.123.1.1 19333 1yge 839 4.01e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1ois 223 4.03e+01 1a36A e.15.1.1 43267 1s6bB 119 4.11e+01 a.133.1.2 98593 1zbqA 327 4.12e+01 2aclB 244 4.26e+01 1pylA 97 4.26e+01 d.1.1.2 104391 1lj8A 493 4.29e+01 a.100.1.9,c.2.1.6 90392,90393 1gz6A 319 4.30e+01 c.2.1.2 76410 1quuA 250 4.33e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 2g8oA 264 4.35e+01 1yxlA 119 4.36e+01 1go3F 107 4.36e+01 a.60.8.2 65407 2g8mA 264 4.37e+01 1usuA 260 4.43e+01 d.14.1.8 99885 1x6iA 91 4.43e+01 1iq8A 582 4.46e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1ka2A 499 4.46e+01 d.92.1.5 77305 1w7bA 339 4.52e+01 1jkoC 52 4.54e+01 a.4.1.2 66809 2d69A 430 4.55e+01 1rpjA 288 4.57e+01 2dri c.93.1.1 35656 1xkyA 301 4.60e+01 1b5l 172 4.60e+01 1b5l a.26.1.3 16900 2cohA 202 4.62e+01 1mswD 883 4.65e+01 e.8.1.3 79427 1z91A 147 4.69e+01 1h2kA 349 4.78e+01 b.82.2.6 76572 2d00A 109 4.80e+01 1qghA 156 4.81e+01 1qghA a.25.1.1 16728 1swyA 164 4.86e+01 1vyiA 112 4.87e+01 1jdhA 529 4.91e+01 a.118.1.1 66549 1ig5A 75 5.05e+01 4icb a.39.1.1 62363 1dmtA 696 5.10e+01 1dmtA d.92.1.4 40296 1mw5A 187 5.15e+01 d.259.1.1 91477 1wa5B 530 5.16e+01 1eca 136 5.19e+01 1flp a.1.1.2 15209 2cwxA 430 5.25e+01 1ibrB 462 5.27e+01 1qgrA a.118.1.1 19120 2b8lA 405 5.27e+01 1q79A 514 5.32e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1ho8A 480 5.33e+01 1ho8A a.118.1.9 61107 2b4jC 98 5.33e+01 1gjjA 168 5.34e+01 a.140.1.1,a.140.1.1 83291,83292 1gw0A 559 5.36e+01 b.6.1.3,b.6.1.3,b.6.1.3 70623,70624,70625 1gxyA 226 5.42e+01 d.166.1.3 76380 1x4tA 92 5.46e+01 1f5aA 513 5.46e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1p36A 164 5.52e+01 d.2.1.3 93978 4icb 76 5.55e+01 4icb a.39.1.1 17145 1i1iP 681 5.55e+01 1i1iP d.92.1.5 40297 1y6vA 449 5.57e+01 1k7kA 221 5.65e+01 c.51.4.1 72104 2gpiA 91 5.74e+01 1poa 118 5.75e+01 1poa a.133.1.2 19514 1x6vA 630 5.78e+01 1qynA 153 5.80e+01 d.33.1.1 96597 1f21A 155 5.82e+01 2rn2 c.55.3.1 33550 1sx7A 164 5.83e+01 1udmA 149 5.89e+01 d.109.1.2 107780 2fupA 168 5.92e+01 1j5yA 187 5.92e+01 a.4.5.1,d.94.2.1 71592,71593 1wkqA 164 5.93e+01 c.97.1.2 109393 1ne9A 335 5.99e+01 d.108.1.4,d.108.1.4 91839,91840 1azsA 220 6.04e+01 1azsA d.58.29.1 39416 1axn 323 6.06e+01 1avc a.65.1.1 18149 1u02A 239 6.10e+01 c.108.1.15 107538 1i7wA 538 6.22e+01 3bct a.118.1.1 61909 1ux8A 132 6.24e+01 1s28A 132 6.24e+01 d.198.1.1 105223 1nrlA 316 6.26e+01 a.123.1.1 92091 1sdoA 203 6.28e+01 c.52.1.21 98809 2db0A 253 6.30e+01 1zarA 282 6.30e+01 1s4kA 120 6.30e+01 a.35.1.6 105254 1gs9A 165 6.42e+01 a.24.1.1 83313 1kwfA 363 6.46e+01 a.102.1.2 73078 1wi9A 72 6.51e+01 1wkbA 810 6.73e+01 1ewkA 490 6.76e+01 1ewkA c.93.1.1 35712 2cwyA 94 6.80e+01 1mgrA 99 7.03e+01 d.1.1.2 79106 1e3aA 260 7.08e+01 1ajqA d.153.1.2 41838 1t2lA 141 7.15e+01 1f7cA 231 7.27e+01 1f7cA a.116.1.1 19107 1g5cA 170 7.30e+01 1g5cA c.53.2.1 60264 1cem 363 7.33e+01 1cem a.102.1.2 18826 1urqA 63 7.37e+01 h.1.15.1 107994 6paxA 133 7.43e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 1rw2A 152 7.49e+01 a.118.19.1 97961 1i27A 73 7.53e+01 1i27A a.4.5.30 61555 2ahmA 88 7.55e+01 1jhgA 101 7.62e+01 1jhgA a.4.12.1 19009 1r1hA 696 7.67e+01 d.92.1.4 104756 119l 164 7.68e+01 1l92 d.2.1.3 36622 1y0nA 78 7.73e+01 1b68A 191 7.75e+01 1nfn a.24.1.1 59076 2fuqA 747 7.77e+01 2cujA 108 7.77e+01 1rwyA 109 7.82e+01 a.39.1.4 98002 1yodA 30 8.12e+01 1wqgA 185 8.15e+01 1rovA 857 8.18e+01 a.119.1.1,b.12.1.1 97674,97675 1w2yA 229 8.27e+01 a.204.1.1 109140 2fhzA 109 8.30e+01 2if1 126 8.35e+01 2if1 d.64.1.1 39547 2g03A 194 8.38e+01 1pv0A 46 8.39e+01 a.2.12.1 95141 1r6yA 115 8.41e+01 1wvgA 359 8.42e+01 1ed8A 449 8.46e+01 1b8jA c.76.1.1 34988 1qbkB 890 8.57e+01 1qbkB a.118.1.1 19127 1hcrA 52 8.64e+01 1hcrA a.4.1.2 16020 1y8aA 332 8.66e+01 1v1aA 309 8.66e+01 c.72.1.1 100249 1ma3A 253 8.66e+01 c.31.1.5 78883 1mq4A 272 8.72e+01 d.144.1.7 91391 1ofuX 119 8.81e+01 c.37.1.22 86976 2f0aA 98 8.86e+01 1xszA 356 8.90e+01 2a5dA 175 8.92e+01