# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a9uA 144 9.85e-02 1xsm 390 1.09e+00 1xsm a.25.1.2 16804 1yn9A 169 1.41e+00 1h3nA 878 1.64e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2cwyA 94 2.17e+00 1jk0A 419 2.33e+00 a.25.1.2 63142 1h0oA 390 2.53e+00 a.25.1.2 70845 1x8vA 455 2.93e+00 1gvhA 396 3.05e+00 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1w68A 390 3.06e+00 a.25.1.2 109216 1qlnA 883 3.26e+00 1cezA e.8.1.3 43111 1h5zA 455 3.41e+00 a.104.1.1 90622 1u13A 455 4.36e+00 a.104.1.1 107578 1lrv 244 4.79e+00 1lrv a.118.1.5 19146 1e9xA 455 5.66e+00 1ea1A a.104.1.1 18969 1u2wA 122 5.68e+00 1hm6A 346 5.85e+00 1avc a.65.1.1 18147 1lniA 96 6.16e+00 d.1.1.2 74046 1rgeA 96 6.27e+00 1rgeA d.1.1.2 36028 1uhgA 385 6.82e+00 e.1.1.1 88491 1ovaA 386 7.10e+00 1ovaA e.1.1.1 42619 1cuk 203 8.39e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1gl2C 65 9.17e+00 h.1.15.1 65280 1w5tA 412 9.39e+00 1tw9A 206 9.59e+00 a.45.1.1,c.47.1.5 107381,107382 2h1nA 567 9.61e+00 1ka2A 499 9.85e+00 d.92.1.5 77305 1zejA 293 1.01e+01 1vrmA 325 1.03e+01 1gmjA 84 1.14e+01 h.4.8.1 65310 1pylA 97 1.19e+01 d.1.1.2 104391 1jk0B 345 1.20e+01 a.25.1.2 63143 1mun 225 1.26e+01 1mun a.96.1.2 18744 1i4mA 108 1.26e+01 d.6.1.1 66025 2c12A 439 1.29e+01 1r1uA 106 1.30e+01 a.4.5.5 104771 1g8pA 350 1.31e+01 1g8pA c.37.1.20 60376 1oyzA 280 1.33e+01 a.118.1.16 93775 2ah6A 208 1.39e+01 1w27A 714 1.44e+01 1jhgA 101 1.56e+01 1jhgA a.4.12.1 19009 1j7nA 776 1.58e+01 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1i1rB 181 1.59e+01 1i1rB a.26.1.1 61548 1hg4A 279 1.79e+01 1lbd a.123.1.1 19333 1io2A 213 1.79e+01 1ekeA c.55.3.1 62612 2bb6A 414 1.81e+01 1mgrA 99 1.84e+01 d.1.1.2 79106 2ccmA 191 1.85e+01 1a0p 290 1.85e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1wj7A 104 1.88e+01 2a72A 146 1.88e+01 1kekA 1231 1.99e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 68524,68525,68526,68527,68528 1ho8A 480 2.01e+01 1ho8A a.118.1.9 61107 1vddA 228 2.03e+01 e.49.1.1 108519 1wa8A 99 2.05e+01 1fpzA 212 2.16e+01 1fpzA c.45.1.1 59976 1vgmA 378 2.20e+01 1tllA 688 2.21e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 1sqgA 429 2.30e+01 a.79.1.3,c.66.1.38 105912,105913 2c3mA 1231 2.33e+01 1rkpA 326 2.48e+01 a.211.1.2 97620 1up6A 416 2.49e+01 c.2.1.5,d.162.1.2 107976,107977 1pjqA 457 2.50e+01 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1up7A 417 2.59e+01 1deeG 54 2.60e+01 1fc2C a.8.1.1 16343 2es4D 332 2.61e+01 2bcqA 335 2.72e+01 1cem 363 2.72e+01 1cem a.102.1.2 18826 1owcA 427 2.73e+01 a.103.1.1 104039 1a5t 334 2.77e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1khdA 345 2.77e+01 a.46.2.1,c.27.1.1 77400,77401 2b1eA 564 2.91e+01 2h58A 330 3.07e+01 1wu7A 434 3.08e+01 2cohA 202 3.13e+01 1y7yA 74 3.15e+01 1vmaA 306 3.18e+01 a.24.13.1,c.37.1.10 108887,108888 1x3kA 152 3.19e+01 1kkhA 317 3.21e+01 d.14.1.5,d.58.26.3 72645,72646 1p7tA 731 3.23e+01 c.1.13.1 94319 1gnwA 211 3.23e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1ab4 477 3.29e+01 1ab4 e.11.1.1 43251 1tx4A 198 3.29e+01 1tx4A a.116.1.1 19098 2bidA 197 3.35e+01 2bidA f.1.4.1 43398 1go3F 107 3.46e+01 a.60.8.2 65407 1kb9A 431 3.50e+01 d.185.1.1,d.185.1.1 77311,77312 1rm6C 161 3.53e+01 1bed 181 3.58e+01 1fvkA c.47.1.13 90330 1ezvA 430 3.67e+01 1be3A d.185.1.1,d.185.1.1 59541,59542 1d8cA 723 3.84e+01 1d8cA c.1.13.1 29325 1vkuA 100 3.85e+01 a.28.1.1 108690 1yb3A 175 3.85e+01 2fd5A 180 3.94e+01 6gsvA 217 4.01e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1lfkA 398 4.06e+01 a.104.1.1 77926 1mswD 883 4.20e+01 e.8.1.3 79427 1nznA 126 4.40e+01 a.118.8.1 92382 1tffA 234 4.55e+01 d.3.1.11 106854 1s9pA 227 4.59e+01 a.123.1.1 105384 1x6iA 91 4.61e+01 2fupA 168 4.65e+01 2ar0A 541 4.71e+01 1f20A 435 4.85e+01 b.43.4.1,c.25.1.4 64932,64933 1bc5A 269 4.86e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1af7 274 4.94e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1r31A 428 5.05e+01 d.58.20.1,d.179.1.1 96897,96898 3pviA 157 5.07e+01 3pviA c.52.1.6 33300 1yz4A 160 5.08e+01 1odoA 408 5.11e+01 a.104.1.1 92783 1elwA 118 5.15e+01 1a17 a.118.8.1 19207 1fpoA 171 5.21e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1k3pA 426 5.23e+01 a.103.1.1 77237 1wurA 220 5.25e+01 1hdmA 201 5.36e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 1cqxA 403 5.38e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1dtoA 221 5.54e+01 1dtoA b.91.1.1 28405 1qf5A 431 5.59e+01 1adeA c.37.1.10 32212 1kwfA 363 5.62e+01 a.102.1.2 73078 1nd9A 49 5.69e+01 a.6.1.6 85575 1t3qA 168 5.73e+01 a.56.1.1,d.15.4.2 106367,106368 1qexA 288 5.79e+01 1qexA b.32.1.1 24425 1ujwB 135 5.79e+01 h.4.9.1 99472 1xi1A 575 5.84e+01 1hcrA 52 5.92e+01 1hcrA a.4.1.2 16020 2bcfA 276 5.93e+01 1ks9A 291 5.98e+01 a.100.1.7,c.2.1.6 68857,68858 1q2zA 120 6.01e+01 a.118.19.1 95656 1mroA 548 6.07e+01 1mroA a.89.1.1,d.58.31.2 18525,39443 1hbnA 549 6.08e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 1u00A 227 6.10e+01 1dgnA 89 6.11e+01 1dgnA a.77.1.3 18436 1y6zA 263 6.15e+01 1z7lA 276 6.22e+01 1k3yA 221 6.22e+01 a.45.1.1,c.47.1.5 77245,77246 1fsz 372 6.32e+01 1fsz c.32.1.1,d.79.2.1 31750,39802 1ybhA 590 6.42e+01 1ztuA 341 6.49e+01 2bl8A 103 6.60e+01 2f6sA 201 6.70e+01 1n3gA 113 6.82e+01 d.204.1.1 79962 2fug1 438 6.87e+01 2f6hX 419 6.93e+01 1jmsA 381 7.12e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1gs9A 165 7.13e+01 a.24.1.1 83313 1s6lA 212 7.14e+01 1zx1A 231 7.18e+01 1jkoC 52 7.18e+01 a.4.1.2 66809 1s8nA 205 7.21e+01 c.23.1.1 105374 1flcB 175 7.21e+01 1flcB h.3.1.1 45716 1z3xA 238 7.26e+01 1hbzA 498 7.44e+01 1cf9A e.5.1.1 60937 2b5aA 77 7.59e+01 1zzlA 351 7.64e+01 2a65A 519 7.65e+01 1gweA 503 7.65e+01 e.5.1.1 70667 1i0hA 205 7.69e+01 1avmA a.2.11.1,d.44.1.1 15760,38685 1ez0A 510 7.70e+01 1eyyA c.82.1.1 35385 1g4yB 101 7.73e+01 1g4yB f.15.1.1 60251 1l1eA 287 7.76e+01 c.66.1.18 73454 1w99A 558 7.79e+01 1o9rA 162 7.82e+01 a.25.1.1 86706 1q52A 314 7.89e+01 c.14.1.3 95846 1y8aA 332 7.90e+01 1ywrA 360 7.91e+01 1kl9A 182 7.92e+01 b.40.4.5 72681 1avoB 140 7.95e+01 1avoB 1tn6A 382 7.96e+01 1b3uA 588 8.00e+01 1b3uA a.118.1.2 19135 1v8bA 479 8.01e+01 1b0pA 1231 8.01e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 31831,31832,33104,34157,39003 1ois 223 8.04e+01 1a36A e.15.1.1 43267 1qtrA 317 8.06e+01 1qtrA c.69.1.7 34660 1svsA 353 8.22e+01 c.37.1.8 106051 1mkp 144 8.28e+01 1vhrA c.45.1.1 32654 1i1iP 681 8.30e+01 1i1iP d.92.1.5 40297 1yi8A 351 8.32e+01 1nd7A 374 8.35e+01 d.148.1.1 91817 1ew4A 106 8.36e+01 1ew4A d.82.2.1 40023 1i6pA 220 8.40e+01 1ddzA c.53.2.1 61848 2a1iA 146 8.41e+01 1yucA 255 8.47e+01 1pieA 419 8.50e+01 d.14.1.5,d.58.26.7 94706,94707 1zz2A 360 8.62e+01 1evyA 366 8.62e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1p5sA 203 8.80e+01 a.40.1.1 94147 1qyiA 384 8.80e+01 c.108.1.13 96595 1u55A 188 8.97e+01 d.278.1.1 107677 1ds1A 324 8.98e+01 1drtA b.82.2.2 28127