# List of top-scoring protein chains for T0381.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mkmA 249 3.27e-30 a.4.5.33,d.110.2.2 79242,79243 2g7uA 257 7.30e-29 1yspA 181 1.10e-22 1td5A 202 5.81e-21 d.110.2.2 106767 1tf1A 198 1.33e-20 d.110.2.2 106826 1ysqA 193 2.41e-20 1q1hA 110 3.27e-03 a.4.5.41 95580 1ku9A 152 7.03e-03 a.4.5.36 77544 1r22A 122 1.71e-02 a.4.5.5 104777 2fbhA 146 2.33e-02 2acjA 66 3.92e-02 1qbjA 81 4.35e-02 1qbjA a.4.5.19 16155 1qgpA 77 5.06e-02 1qbjA a.4.5.19 16158 1ulyA 192 5.40e-02 1r1tA 122 5.85e-02 a.4.5.5 104769 2a61A 145 6.33e-02 1j75A 67 6.40e-02 a.4.5.19 62673 1i1gA 141 6.80e-02 a.4.5.32,d.58.4.2 65982,65983 1ft9A 222 6.86e-02 1ft9A a.4.5.4,b.82.3.1 16107,28131 2b0lA 102 1.35e-01 1o5lA 213 1.47e-01 b.82.3.2 92506 1wsuA 124 1.62e-01 1r7jA 95 1.75e-01 a.4.5.49 104836 1ri7A 171 1.75e-01 a.4.5.32,d.58.4.2 97504,97505 2ev0A 142 1.86e-01 2cfxA 144 1.94e-01 1sfxA 109 2.10e-01 a.4.5.50 105505 1on2A 142 2.19e-01 a.4.5.24,a.76.1.1 87103,87104 1u2wA 122 2.68e-01 2fnaA 357 2.80e-01 2ethA 154 3.16e-01 1lvaA 258 4.15e-01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1j5yA 187 4.86e-01 a.4.5.1,d.94.2.1 71592,71593 1tw3A 360 6.55e-01 a.4.5.29,c.66.1.12 107373,107374 1v4rA 102 7.28e-01 1njrA 284 1.20e+00 c.50.1.2 103858 1b1bA 140 1.37e+00 1bi0 a.4.5.24,a.76.1.1 16215,18421 1lnwA 147 1.44e+00 a.4.5.28 78104 1fx7A 230 1.89e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1xnpA 202 2.03e+00 1bia 321 2.17e+00 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1lj9A 144 2.37e+00 a.4.5.28 78035 2givA 295 2.47e+00 1s3jA 155 2.49e+00 a.4.5.28 98437 2fxaA 207 2.64e+00 1o3sA 200 2.71e+00 a.4.5.4,b.82.3.2 86609,86610 1bw6A 56 2.83e+00 1bw6A a.4.1.7 16052 1f5tA 121 3.51e+00 1bi0 a.4.5.24,a.76.1.1 16203,18409 2dbbA 151 3.57e+00 1i5zA 209 3.61e+00 a.4.5.4,b.82.3.2 83669,83670 1g6nA 210 3.65e+00 2cgpA a.4.5.4,b.82.3.2 16100,28139 1hw5A 210 3.70e+00 2cgpA a.4.5.4,b.82.3.2 16098,28137 1o3tA 200 3.93e+00 a.4.5.4,b.82.3.2 86611,86612 1hlvA 131 4.10e+00 a.4.1.7,a.4.1.7 65854,65855 1id0A 152 4.19e+00 d.122.1.3 66111 1cgpA 205 4.71e+00 a.4.5.4,b.82.3.2 16096,28135 1je8A 82 5.08e+00 a.4.6.2 77108 1i6xA 209 5.12e+00 a.4.5.4,b.82.3.2 83673,83674 1r1uA 106 5.32e+00 a.4.5.5 104771 2gauA 232 5.69e+00 1e32A 458 5.79e+00 1e32A b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1xcvA 139 6.16e+00 2fu4A 83 6.31e+00 1hw1A 239 6.60e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1e2xA 243 6.70e+00 1e2xA a.4.5.6,a.78.1.1 16113,18443 1xn7A 78 6.87e+00 1jgsA 138 7.54e+00 a.4.5.28 66683 2dtr 226 7.74e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1mzbA 136 7.87e+00 a.4.5.42 91497 1p6rA 82 8.04e+00 a.4.5.39 94187 2tdx 226 8.04e+00 1bi0 a.4.5.24,a.76.1.1 16201,18407 1c0wA 225 8.04e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1g3tA 226 8.21e+00 a.4.5.24,a.76.1.1,b.34.1.2 65127,65128,65129 2csbA 519 8.97e+00 1ruoA 209 9.14e+00 2cgpA a.4.5.4,b.82.3.2 16105,28144 1tqyB 415 9.84e+00 c.95.1.1,c.95.1.1 107247,107248 1fwzA 226 1.00e+01 a.4.5.24,a.76.1.1,b.34.1.2 60077,60078,60079 1res 43 1.06e+01 1ret a.4.1.2 16023 1x42A 232 1.06e+01 1p92A 226 1.07e+01 a.4.5.24,a.76.1.1,b.34.1.2 104085,104086,104087 2f2eA 146 1.09e+01 1ypwA 806 1.11e+01 2ciwA 299 1.13e+01 1r7rA 816 1.13e+01 b.52.2.3,c.37.1.20,c.37.1.20,d.31.1.1 97203,97204,97205,97206 1rxtA 496 1.19e+01 2gf5A 191 1.26e+01 1oryA 130 1.27e+01 a.24.19.1 93466 1k78A 149 1.27e+01 a.4.1.5,a.4.1.5 68255,68256 1orjA 130 1.29e+01 a.24.19.1 93456 1poiA 317 1.50e+01 1poiA c.124.1.2 34153 1g3yA 226 1.55e+01 a.4.5.24,a.76.1.1,b.34.1.2 65136,65137,65138 1y0uA 96 1.56e+01 2cg4A 152 1.60e+01 1xxfC 142 1.63e+01 1ww7A 160 1.70e+01 1m7kA 99 1.81e+01 a.7.7.1 74573 1fb6A 105 1.85e+01 1thx c.47.1.1 32739 1gl8A 104 1.87e+01 c.47.1.1 65290 1izmA 184 1.87e+01 a.199.1.1 90725 1j4nA 271 1.93e+01 f.19.1.1 71510 1qzzA 374 2.00e+01 a.4.5.29,c.66.1.12 96719,96720 1ykdA 398 2.00e+01 2bneA 241 2.05e+01 2fx0A 201 2.06e+01 1a04A 215 2.10e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 2bndA 241 2.14e+01 2f2uA 402 2.16e+01 1x9nA 688 2.17e+01 2cw8A 537 2.29e+01 2fbkA 181 2.36e+01 1y3hA 307 2.41e+01 1u0tA 307 2.41e+01 e.52.1.1 107567 1v30A 124 2.50e+01 2av5A 120 2.56e+01 1xxdC 142 2.64e+01 1zwmA 177 2.65e+01 1mg7A 417 2.70e+01 d.14.1.6,d.58.26.6 84954,84955 1z91A 147 2.70e+01 2cxcA 144 2.72e+01 1k9vF 201 2.90e+01 c.23.16.1 68365 2f22A 144 3.08e+01 1n25A 368 3.10e+01 c.37.1.20 85264 1svmA 377 3.13e+01 1zboA 210 3.15e+01 1wu7A 434 3.18e+01 1kxjA 205 3.27e+01 c.23.16.1 73153 2bjcA 62 3.30e+01 1sfuA 75 3.35e+01 a.4.5.19 105503 2d9aA 60 3.45e+01 1okrA 123 3.72e+01 a.4.5.39 93269 1bkdS 477 3.73e+01 1bkdS a.117.1.1 19111 1nvvS 481 3.73e+01 a.117.1.1 86279 1sd6A 123 3.73e+01 a.4.5.39 98803 1xd2C 484 3.74e+01 1ttzA 87 3.77e+01 c.47.1.1 107309 1zx4A 192 3.82e+01 1g9mL 214 3.83e+01 32c2A b.1.1.1,b.1.1.2 20262,21262 1yymL 214 3.83e+01 1gc1L 213 3.83e+01 8fabA b.1.1.1,b.1.1.2 20264,21264 1p4xA 250 3.84e+01 a.4.5.28,a.4.5.28 87784,87785 1xdvA 847 3.95e+01 1xd4A 852 3.95e+01 1oyiA 82 4.00e+01 a.4.5.19 93729 1a6s 87 4.01e+01 1a6s a.61.1.4 18134 1zljA 78 4.12e+01 1a8p 258 4.13e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 2drwA 363 4.17e+01 1v54B 227 4.21e+01 b.6.1.2,f.17.2.1 100322,100323 1aozA 552 4.27e+01 1aozA b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1jc4A 148 4.29e+01 1jc4A d.32.1.4 62863 1vr4A 103 4.34e+01 2gtcA 111 4.37e+01 1gtmA 419 4.38e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1tie 172 4.47e+01 1wba b.42.4.1 25592 1su3A 450 4.63e+01 1bl0A 129 4.66e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1xs9A 132 4.68e+01 1lccA 51 4.81e+01 1pru a.35.1.5 17110 1zlkA 95 4.95e+01 1esc 306 4.96e+01 1esc c.23.10.1 31334 1nhkL 144 4.99e+01 1npk d.58.6.1 39142 2cw5A 255 4.99e+01 1ck1A 239 5.01e+01 b.40.2.2,d.15.6.1 70067,70068 1p5qA 336 5.03e+01 a.118.8.1,d.26.1.1 104068,104069 1qz2A 336 5.03e+01 a.118.8.1,d.26.1.1 104663,104664 1fp2A 352 5.04e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1xx9C 142 5.09e+01 2czvC 120 5.36e+01 1wdvA 152 5.37e+01 1b0nA 111 5.44e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 2cmxA 118 5.45e+01 1lqc 56 5.58e+01 1pru a.35.1.5 17109 1b47A 304 5.61e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17381,17775,40529 1z56A 246 5.76e+01 2a8lA 420 5.78e+01 1yt5A 258 5.81e+01 1y56A 493 5.81e+01 1dvwA 18 5.94e+01 j.109.1.1 90442 1wubA 178 5.95e+01 1sluA 142 6.00e+01 1sluA b.16.1.1 23685 1ewrA 649 6.05e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1 19073,32387,33744 1yvhA 329 6.17e+01 2cblA 305 6.18e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 2cunA 410 6.19e+01 1e94A 175 6.28e+01 1nedA d.153.1.4 41977 1xpvA 78 6.30e+01 1nedA 183 6.31e+01 1nedA d.153.1.4 41974 1a2n 419 6.34e+01 1uae d.68.2.2 39575 1v5iB 76 6.45e+01 1itpA 77 6.45e+01 d.58.3.2 66371 1z05A 429 6.52e+01 1wojA 214 6.55e+01 1cjgA 62 6.57e+01 1pru a.35.1.5 17112 1zc6A 305 6.63e+01 2a2cA 478 6.65e+01 1l1mA 62 6.69e+01 a.35.1.5 73474 1a32 88 6.71e+01 1a32 a.16.1.2 16384 1fw6A 768 6.87e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19071,32385,33742,39745 1ewqA 765 6.87e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1wh1A 124 6.94e+01 2gbsA 145 6.98e+01 1uxc 65 6.99e+01 1uxc a.35.1.5 17119 1jhgA 101 7.10e+01 1jhgA a.4.12.1 19009 1kelH 218 7.32e+01 1igtB b.1.1.1,b.1.1.2 20113,21143 1g8eA 116 7.47e+01 1g8eA a.145.1.1 60346 1mqeA 207 7.74e+01 d.113.1.1 91394 1dlgA 419 7.87e+01 1uae d.68.2.2 39580 1dsfH 119 7.93e+01 1igtB b.1.1.1 20247 2aehA 369 7.98e+01 2h6bA 250 7.99e+01 2al6A 375 8.18e+01 1qxyA 252 8.37e+01 d.127.1.1 96565 2a8mA 420 8.38e+01 1uae 419 8.39e+01 1uae d.68.2.2 39574 1x2mA 64 8.53e+01 1sfnA 246 8.64e+01 b.82.1.11 105496 1gkpA 458 8.67e+01 b.92.1.3,c.1.9.6 70231,70232 1p9mC 201 8.69e+01 b.1.2.1,b.1.2.1 87995,87996 1f3uB 171 8.74e+01 1f3uB b.65.1.1 27525 1fbvA 388 8.76e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1,g.44.1.1 17384,17778,40532,45321 1zr4A 183 8.90e+01 1vfsA 386 8.95e+01 b.49.2.2,c.1.6.1 108584,108585 1inzA 148 8.97e+01 1eduA a.118.9.1 62610 1m62A 87 8.98e+01 a.7.7.1 74520