Best Alignments for T0381

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1mkmA/T0381-1mkmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mkmA/T0381-1mkmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0127e-404.10e-148 a.4.5.33
d.110.2.2
2g7uA/T0381-2g7uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g7uA/T0381-2g7uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0797e-381.42e-139
1yspA/T0381-1yspA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yspA/T0381-1yspA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9917e-294.41e-98
1td5A/T0381-1td5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1td5A/T0381-1td5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.1915e-297.71e-97 d.110.2.2
1ysqA/T0381-1ysqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ysqA/T0381-1ysqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2073e-271.65e-89
1on2A/T0381-1on2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1on2A/T0381-1on2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9122e-066.60e-35 a.4.5.24
a.76.1.1
1ulyA/T0381-1ulyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ulyA/T0381-1ulyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1338e-051.38e-32
2dtr/T0381-2dtr-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2dtr/T0381-2dtr-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8081e-056.96e-24 1bi0 a.4.5.24
a.76.1.1
b.34.1.2
1r7jA/T0381-1r7jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1r7jA/T0381-1r7jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5789e-041.43e-21 a.4.5.49
2fbhA/T0381-2fbhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fbhA/T0381-2fbhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4576e-041.52e-19

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001