# List of top-scoring protein chains for T0381.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mkmA 249 3.73e-33 a.4.5.33,d.110.2.2 79242,79243 2g7uA 257 2.23e-31 1yspA 181 9.69e-24 1td5A 202 6.78e-22 d.110.2.2 106767 1tf1A 198 1.06e-21 d.110.2.2 106826 1ysqA 193 4.36e-21 1ku9A 152 3.82e-04 a.4.5.36 77544 1q1hA 110 1.03e-03 a.4.5.41 95580 1ulyA 192 2.36e-03 1i1gA 141 4.48e-03 a.4.5.32,d.58.4.2 65982,65983 2fbhA 146 9.90e-03 1r22A 122 1.69e-02 a.4.5.5 104777 2ev0A 142 1.89e-02 1ri7A 171 1.99e-02 a.4.5.32,d.58.4.2 97504,97505 2a61A 145 2.08e-02 1on2A 142 2.20e-02 a.4.5.24,a.76.1.1 87103,87104 2ethA 154 2.25e-02 1qbjA 81 3.14e-02 1qbjA a.4.5.19 16155 2acjA 66 3.44e-02 2cfxA 144 3.76e-02 1qgpA 77 3.86e-02 1qbjA a.4.5.19 16158 1sfxA 109 6.48e-02 a.4.5.50 105505 1j75A 67 6.70e-02 a.4.5.19 62673 1r1tA 122 6.95e-02 a.4.5.5 104769 1jhfA 202 7.24e-02 a.4.5.2,b.87.1.1 63057,63058 1ft9A 222 7.49e-02 1ft9A a.4.5.4,b.82.3.1 16107,28131 1xnpA 202 8.14e-02 1jhhA 202 8.22e-02 a.4.5.2,b.87.1.1 63060,63061 2b0lA 102 1.13e-01 1j5yA 187 1.15e-01 a.4.5.1,d.94.2.1 71592,71593 1o5lA 213 1.87e-01 b.82.3.2 92506 1u2wA 122 1.95e-01 1s3jA 155 1.99e-01 a.4.5.28 98437 2cg4A 152 2.69e-01 1r7jA 95 2.71e-01 a.4.5.49 104836 1b1bA 140 2.76e-01 1bi0 a.4.5.24,a.76.1.1 16215,18421 1lnwA 147 4.53e-01 a.4.5.28 78104 1fx7A 230 4.58e-01 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2fxaA 207 5.43e-01 1hw1A 239 6.49e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1e2xA 243 6.63e-01 1e2xA a.4.5.6,a.78.1.1 16113,18443 1wsuA 124 7.11e-01 1lj9A 144 7.68e-01 a.4.5.28 78035 1f5tA 121 8.28e-01 1bi0 a.4.5.24,a.76.1.1 16203,18409 2dbbA 151 1.16e+00 2dtr 226 1.29e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1xcvA 139 1.34e+00 1c0wA 225 1.50e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1g3tA 226 1.58e+00 a.4.5.24,a.76.1.1,b.34.1.2 65127,65128,65129 1o3sA 200 1.60e+00 a.4.5.4,b.82.3.2 86609,86610 2tdx 226 1.71e+00 1bi0 a.4.5.24,a.76.1.1 16201,18407 1r1uA 106 1.71e+00 a.4.5.5 104771 1v4rA 102 1.75e+00 1i5zA 209 1.85e+00 a.4.5.4,b.82.3.2 83669,83670 1g6nA 210 1.87e+00 2cgpA a.4.5.4,b.82.3.2 16100,28139 1hw5A 210 1.89e+00 2cgpA a.4.5.4,b.82.3.2 16098,28137 1p92A 226 1.89e+00 a.4.5.24,a.76.1.1,b.34.1.2 104085,104086,104087 1qzzA 374 1.94e+00 a.4.5.29,c.66.1.12 96719,96720 2cw8A 537 1.95e+00 1fwzA 226 2.09e+00 a.4.5.24,a.76.1.1,b.34.1.2 60077,60078,60079 1o3tA 200 2.12e+00 a.4.5.4,b.82.3.2 86611,86612 2fu4A 83 2.24e+00 1lvaA 258 2.30e+00 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1jgsA 138 2.32e+00 a.4.5.28 66683 1tw3A 360 2.34e+00 a.4.5.29,c.66.1.12 107373,107374 1z6rA 406 2.61e+00 1g3yA 226 2.69e+00 a.4.5.24,a.76.1.1,b.34.1.2 65136,65137,65138 1cgpA 205 2.69e+00 a.4.5.4,b.82.3.2 16096,28135 1i6xA 209 2.81e+00 a.4.5.4,b.82.3.2 83673,83674 1njrA 284 3.01e+00 c.50.1.2 103858 1bia 321 3.04e+00 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1bw6A 56 3.05e+00 1bw6A a.4.1.7 16052 1z05A 429 3.24e+00 1ruoA 209 3.58e+00 2cgpA a.4.5.4,b.82.3.2 16105,28144 2fbkA 181 3.68e+00 1mzbA 136 3.70e+00 a.4.5.42 91497 1z91A 147 3.74e+00 1xn7A 78 3.74e+00 2givA 295 3.79e+00 1je8A 82 4.06e+00 a.4.6.2 77108 1hlvA 131 4.32e+00 a.4.1.7,a.4.1.7 65854,65855 1y0uA 96 4.79e+00 2bfwA 200 5.15e+00 1u0tA 307 5.45e+00 e.52.1.1 107567 1y3hA 307 5.50e+00 1p6rA 82 5.61e+00 a.4.5.39 94187 1lea 84 5.64e+00 1lea a.4.5.2 16085 2bisA 440 5.91e+00 1okrA 123 6.48e+00 a.4.5.39 93269 2gauA 232 6.63e+00 1sd6A 123 6.78e+00 a.4.5.39 98803 2fnaA 357 7.19e+00 2csbA 519 7.42e+00 1h1yA 228 7.44e+00 c.1.2.2 76506 1yt5A 258 7.85e+00 1idjA 359 1.10e+01 1qcxA b.80.1.2 28026 1x9nA 688 1.14e+01 2f22A 144 1.29e+01 1lkvX 232 1.29e+01 a.118.14.1 73980 2f2eA 146 1.31e+01 2drwA 363 1.32e+01 1id0A 152 1.40e+01 d.122.1.3 66111 1wu7A 434 1.41e+01 1jcuA 208 1.42e+01 d.115.1.1 71634 2fx0A 201 1.43e+01 1a04A 215 1.52e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1zlkA 95 1.54e+01 1oryA 130 1.56e+01 a.24.19.1 93466 1orjA 130 1.59e+01 a.24.19.1 93456 1xxfC 142 1.64e+01 1e32A 458 1.64e+01 1e32A b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 2d28C 149 1.67e+01 1idk 359 1.71e+01 1qcxA b.80.1.2 28025 2f2uA 402 1.76e+01 1zljA 78 1.88e+01 1a6i 217 1.89e+01 2tct a.4.1.9,a.121.1.1 16066,19243 1k78A 149 2.04e+01 a.4.1.5,a.4.1.5 68255,68256 2bwrA 401 2.05e+01 1rniA 216 2.06e+01 d.264.1.2 97663 1wdvA 152 2.15e+01 1p4xA 250 2.16e+01 a.4.5.28,a.4.5.28 87784,87785 1x42A 232 2.25e+01 1bjz 207 2.29e+01 2tct a.4.1.9,a.121.1.1 16065,19242 1gkpA 458 2.30e+01 b.92.1.3,c.1.9.6 70231,70232 2tct 207 2.33e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1qpiA 203 2.35e+01 2tct a.4.1.9,a.121.1.1 16072,19249 1dhkA 496 2.50e+01 1smd b.71.1.1,c.1.8.1 27761,28748 1ose 496 2.50e+01 1smd b.71.1.1,c.1.8.1 27766,28753 1ww7A 160 2.53e+01 1pig 496 2.64e+01 1smd b.71.1.1,c.1.8.1 27764,28751 2ciwA 299 2.66e+01 1v30A 124 2.68e+01 1ffvC 287 2.69e+01 1qj2C d.87.2.1,d.145.1.3 40223,41754 2cxcA 144 2.70e+01 1ffuC 287 2.73e+01 1qj2C d.87.2.1,d.145.1.3 40225,41756 1izmA 184 2.73e+01 a.199.1.1 90725 1m7kA 99 2.75e+01 a.7.7.1 74573 1fzpB 123 2.75e+01 1fznD a.4.5.28 19008 1ykdA 398 2.76e+01 1z72A 225 2.78e+01 1ypwA 806 2.78e+01 1ylfA 149 2.80e+01 1r7rA 816 2.81e+01 b.52.2.3,c.37.1.20,c.37.1.20,d.31.1.1 97203,97204,97205,97206 2d27A 149 2.82e+01 1res 43 2.83e+01 1ret a.4.1.2 16023 2a6bA 234 2.84e+01 2frhA 127 2.86e+01 1xxdC 142 2.86e+01 1esc 306 2.88e+01 1esc c.23.10.1 31334 1k9vF 201 2.89e+01 c.23.16.1 68365 1uz5A 402 2.89e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1rztA 331 2.94e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1xsnA 335 2.94e+01 2trt 217 2.95e+01 2tct a.4.1.9,a.121.1.1 16064,19241 1kxjA 205 2.96e+01 c.23.16.1 73153 2bcqA 335 2.96e+01 2bjcA 62 2.99e+01 2g9iA 249 3.03e+01 2cmxA 118 3.06e+01 2eshA 118 3.15e+01 1jc4A 148 3.19e+01 1jc4A d.32.1.4 62863 1lwuC 323 3.27e+01 d.171.1.1,h.1.8.1 74312,74313 2bgcA 238 3.28e+01 1vh8A 170 3.29e+01 d.79.5.1 100647 1jn1A 158 3.31e+01 d.79.5.1 71754 1kelH 218 3.34e+01 1igtB b.1.1.1,b.1.1.2 20113,21143 1n6zA 105 3.41e+01 d.263.1.1 85369 1avaA 403 3.41e+01 1jdc b.71.1.1,c.1.8.1 27797,28784 1dbyA 107 3.42e+01 1thx c.47.1.1 32734 1bvnP 496 3.43e+01 1smd b.71.1.1,c.1.8.1 27767,28754 1zx4A 192 3.48e+01 1uzdC 134 3.49e+01 1mg7A 417 3.52e+01 d.14.1.6,d.58.26.6 84954,84955 1rxtA 496 3.65e+01 1yyvA 131 3.70e+01 2beoA 236 3.70e+01 1omiA 248 3.82e+01 b.82.3.3,a.4.5.4 87079,87080 1vmkA 277 3.93e+01 1vahA 496 4.01e+01 1j4nA 271 4.11e+01 f.19.1.1 71510 2fuzA 377 4.16e+01 2fv1A 377 4.18e+01 1ttzA 87 4.24e+01 c.47.1.1 107309 2cygA 312 4.40e+01 1lccA 51 4.42e+01 1pru a.35.1.5 17110 1ro2A 216 4.43e+01 d.264.1.2 97665 2fnpA 124 4.45e+01 1hx0A 496 4.56e+01 b.71.1.1,c.1.8.1 61346,61347 1kxqA 496 4.56e+01 b.71.1.1,c.1.8.1 73163,73164 1jfh 496 4.57e+01 1smd b.71.1.1,c.1.8.1 27762,28749 1xs9A 132 4.69e+01 1ppi 496 4.74e+01 1smd b.71.1.1,c.1.8.1 27763,28750 1oltA 457 4.85e+01 c.1.28.2 93334 1lqc 56 4.93e+01 1pru a.35.1.5 17109 1bl0A 129 5.15e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1fb6A 105 5.41e+01 1thx c.47.1.1 32739 2atxA 194 5.43e+01 1gkuB 1054 5.44e+01 c.37.1.16,c.37.1.16,e.10.1.1 65257,65258,65259 1gl9B 1054 5.46e+01 c.37.1.16,c.37.1.16,e.10.1.1 65291,65292,65293 1gl8A 104 5.54e+01 c.47.1.1 65290 1cjgA 62 5.56e+01 1pru a.35.1.5 17112 1l1mA 62 5.61e+01 a.35.1.5 73474 2gf5A 191 5.62e+01 2bneA 241 5.85e+01 1xx9C 142 5.96e+01 1qvrA 854 6.09e+01 a.174.1.1,c.37.1.20,c.37.1.20 96432,96433,96434 1su3A 450 6.15e+01 1h6zA 913 6.20e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1tqyB 415 6.23e+01 c.95.1.1,c.95.1.1 107247,107248 2bndA 241 6.29e+01 1vrmA 325 6.29e+01 1eyhA 144 6.48e+01 1eduA a.118.9.1 19214 2h6bA 250 6.55e+01 1h0aA 158 6.62e+01 a.118.9.1 76434 1eduA 149 6.62e+01 1eduA a.118.9.1 19215 1y56A 493 6.81e+01 1stzA 338 6.86e+01 a.4.5.51,d.110.2.3 106009,106010 1ug3A 339 6.87e+01 1sluA 142 6.92e+01 1sluA b.16.1.1 23685 1oyiA 82 6.94e+01 a.4.5.19 93729 1b0nA 111 6.96e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1ub9A 100 7.04e+01 a.4.5.28 99159 1x4hA 111 7.22e+01 1xpvA 78 7.26e+01 1kczA 413 7.26e+01 c.1.11.2,d.54.1.1 68451,68452 1n25A 368 7.38e+01 c.37.1.20 85264 1svmA 377 7.38e+01 1xsvA 113 7.41e+01 2a2cA 478 7.50e+01 1e4yA 214 7.68e+01 1zin c.37.1.1,g.41.2.1 31901,45181 2d9aA 60 7.70e+01 1a8p 258 7.76e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1akeA 214 7.87e+01 1zin c.37.1.1,g.41.2.1 31905,45185 1e4vA 214 7.96e+01 1zin c.37.1.1,g.41.2.1 31903,45183 2a8lA 420 8.02e+01 1p5qA 336 8.02e+01 a.118.8.1,d.26.1.1 104068,104069 1qz2A 336 8.02e+01 a.118.8.1,d.26.1.1 104663,104664 1mqeA 207 8.10e+01 d.113.1.1 91394 1q2yA 140 8.21e+01 d.108.1.1 95655 1inzA 148 8.26e+01 1eduA a.118.9.1 62610 1yabA 87 8.39e+01 1o6aA 96 8.55e+01 b.139.1.1 92562 1fnoA 417 8.62e+01 d.58.19.1,c.56.5.4 70145,75841 1uxc 65 8.64e+01 1uxc a.35.1.5 17119 2fbiA 142 8.71e+01 2g7gA 213 8.72e+01 1uz3A 102 8.78e+01 2cunA 410 8.80e+01 1s7oA 113 8.85e+01 a.4.13.3 105354 1yfm 488 8.94e+01 1furA a.127.1.1 19413 1mc0A 368 8.99e+01 d.110.2.1,d.110.2.1 78937,78938