# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mkmA 249 6.12e-28 a.4.5.33,d.110.2.2 79242,79243 2g7uA 257 1.46e-26 1yspA 181 3.12e-21 1td5A 202 1.55e-20 d.110.2.2 106767 1tf1A 198 2.17e-20 d.110.2.2 106826 1ysqA 193 1.23e-19 1q1hA 110 2.21e-03 a.4.5.41 95580 1j5yA 187 3.16e-03 a.4.5.1,d.94.2.1 71592,71593 1ulyA 192 3.60e-03 2fbhA 146 3.93e-03 2a61A 145 8.29e-03 1on2A 142 1.44e-02 a.4.5.24,a.76.1.1 87103,87104 1sfxA 109 1.53e-02 a.4.5.50 105505 1s3jA 155 2.28e-02 a.4.5.28 98437 2fxaA 207 5.88e-02 1u2wA 122 7.96e-02 1h1yA 228 8.32e-02 c.1.2.2 76506 1lnwA 147 8.93e-02 a.4.5.28 78104 1r1tA 122 9.37e-02 a.4.5.5 104769 2ethA 154 1.11e-01 2b0lA 102 1.15e-01 1smtA 122 1.64e-01 1smtA a.4.5.5 16109 1jgsA 138 1.76e-01 a.4.5.28 66683 1r1uA 106 1.80e-01 a.4.5.5 104771 1qzzA 374 2.02e-01 a.4.5.29,c.66.1.12 96719,96720 1lj9A 144 2.70e-01 a.4.5.28 78035 1z91A 147 3.71e-01 2fbiA 142 4.47e-01 1hw5A 210 5.08e-01 2cgpA a.4.5.4,b.82.3.2 16098,28137 2fnaA 357 5.95e-01 1mzbA 136 6.21e-01 a.4.5.42 91497 1fp2A 352 6.39e-01 1fpxA a.4.5.29,c.66.1.12 59941,59942 2fu4A 83 6.40e-01 1qbjA 81 6.99e-01 1qbjA a.4.5.19 16155 1vd5A 377 7.70e-01 a.102.1.7 108518 1i6xA 209 1.18e+00 a.4.5.4,b.82.3.2 83673,83674 2fv1A 377 1.19e+00 2gauA 232 1.24e+00 1j75A 67 1.27e+00 a.4.5.19 62673 1xnpA 202 1.31e+00 1bia 321 1.36e+00 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2fx0A 201 1.40e+00 2a2cA 478 1.48e+00 2a2dA 478 2.17e+00 1mu5A 471 2.23e+00 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1y0uA 96 2.28e+00 1p4xA 250 2.54e+00 a.4.5.28,a.4.5.28 87784,87785 1yyvA 131 2.98e+00 1izmA 184 3.76e+00 a.199.1.1 90725 1hw1A 239 3.81e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1td2A 287 3.81e+00 c.72.1.5 106765 2dtr 226 3.96e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1lvaA 258 4.06e+00 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1r7jA 95 4.36e+00 a.4.5.49 104836 2c12A 439 4.77e+00 1a04A 215 4.78e+00 1a04A a.4.6.2,c.23.1.1 16234,31089 1p4kA 295 5.47e+00 d.153.1.5 87772 1vi9A 299 5.50e+00 c.72.1.5 100750 1ub9A 100 6.16e+00 a.4.5.28 99159 1mc0A 368 6.30e+00 d.110.2.1,d.110.2.1 78937,78938 1z5bA 469 6.33e+00 1ri7A 171 6.60e+00 a.4.5.32,d.58.4.2 97504,97505 1jhfA 202 7.20e+00 a.4.5.2,b.87.1.1 63057,63058 1oyzA 280 8.39e+00 a.118.1.16 93775 1lnzA 342 8.42e+00 b.117.1.1,c.37.1.8 78112,78113 2af4C 333 8.72e+00 1jkxA 212 9.18e+00 c.65.1.1 66813 1rhcA 330 9.19e+00 c.1.16.3 97468 1q7lA 198 9.62e+00 c.56.5.4 96044 1t5bA 201 9.83e+00 c.23.5.3 106433 1xd7A 145 1.00e+01 a.4.5.55 109566 2awpA 198 1.06e+01 2bgcA 238 1.06e+01 2acjA 66 1.08e+01 1nc5A 373 1.12e+01 a.102.1.6 85548 1okrA 123 1.18e+01 a.4.5.39 93269 1tikA 213 1.22e+01 c.23.5.3 107003 1fb6A 105 1.22e+01 1thx c.47.1.1 32739 1orjA 130 1.32e+01 a.24.19.1 93456 1twdA 256 1.34e+01 c.1.30.1 107397 2napA 723 1.37e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1tqmA 282 1.37e+01 a.4.5.56,d.144.1.9 107236,107237 1ys7A 233 1.49e+01 2cfxA 144 1.50e+01 1mw9X 592 1.55e+01 e.10.1.1 91480 2cw8A 537 1.60e+01 1zarA 282 1.60e+01 1jc4A 148 1.60e+01 1jc4A d.32.1.4 62863 1bjaA 95 1.61e+01 1bjaA a.4.5.9 16122 2apjA 260 1.64e+01 1kdgA 546 1.66e+01 c.3.1.2,d.16.1.1 77337,77338 1e6wA 260 1.66e+01 1e6wA c.2.1.2 59326 9gafA 295 1.67e+01 1apyA d.153.1.5 42008 2bjcA 62 1.68e+01 1fy7A 278 1.68e+01 1fy7A d.108.1.1 40817 2tct 207 1.72e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1wer 334 1.73e+01 1wer a.116.1.2 19108 1f5mA 180 1.74e+01 1f5mB d.110.2.1 40895 1svdM 110 1.74e+01 2f2eA 146 1.77e+01 1sbyA 254 1.77e+01 1stzA 338 1.78e+01 a.4.5.51,d.110.2.3 106009,106010 1dpgA 485 1.79e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1j1nA 492 1.81e+01 c.94.1.1 83978 2cohA 202 1.85e+01 1oxxK 353 1.85e+01 b.40.6.3,c.37.1.12 93715,93716 1yroB 286 1.94e+01 1mtyD 512 1.94e+01 1mhyD a.25.1.2 16742 1xn7A 78 2.00e+01 1ym5A 300 2.02e+01 1omiA 248 2.06e+01 b.82.3.3,a.4.5.4 87079,87080 1qtqA 553 2.22e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1oxsC 353 2.24e+01 b.40.6.3,c.37.1.12 87519,87520 1sjiA 350 2.29e+01 1b16A 254 2.29e+01 1b16A c.2.1.2 29875 1nmmB 286 2.33e+01 c.68.1.2 80662 1tffA 234 2.43e+01 d.3.1.11 106854 1ldjA 760 2.54e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1o5iA 249 2.59e+01 c.2.1.2 92499 1k8kF 168 2.60e+01 d.198.2.1 68312 1a6i 217 2.65e+01 2tct a.4.1.9,a.121.1.1 16066,19243 1try 224 2.65e+01 5ptp b.47.1.2 26017 1yljA 263 2.69e+01 1pq7A 224 2.70e+01 b.47.1.2 95002 2a8lA 420 2.76e+01 1r9gA 216 2.83e+01 c.23.16.1 97258 1dceB 331 2.87e+01 1dceB a.102.4.3 18872 1je8A 82 2.90e+01 a.4.6.2 77108 1in4A 334 3.06e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1fmjA 351 3.11e+01 c.37.1.5 59879 2cxbA 124 3.11e+01 1ycc a.3.1.1 15891 1mkiA 330 3.12e+01 e.3.1.2 84994 1fgxA 288 3.12e+01 1fgxA c.68.1.2 34508 2cunA 410 3.13e+01 1bg2 325 3.22e+01 1bg2 c.37.1.9 32189 1u55A 188 3.37e+01 d.278.1.1 107677 1t5oA 351 3.43e+01 c.124.1.5 106459 1lhpA 312 3.49e+01 c.72.1.5 77960 1wu7A 434 3.56e+01 1fn8A 224 3.57e+01 5ptp b.47.1.2 26012 1tbxA 99 3.57e+01 a.4.5.48 106748 1cxc 124 3.57e+01 1ycc a.3.1.1 15890 1ro2A 216 3.61e+01 d.264.1.2 97665 1v38A 78 3.62e+01 a.60.1.2 100280 1ovnA 248 3.62e+01 a.71.1.1,c.47.1.7 93602,93603 1xuqA 212 3.81e+01 1qwgA 251 3.83e+01 c.1.27.1 96473 2d13A 227 3.99e+01 1mhyD 521 4.20e+01 1mhyD a.25.1.2 16780 1ct9A 553 4.20e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 2f9zC 159 4.20e+01 1mqeA 207 4.26e+01 d.113.1.1 91394 1i7dA 659 4.27e+01 1d6mA e.10.1.1 61886 1cjgA 62 4.32e+01 1pru a.35.1.5 17112 1jx4A 352 4.37e+01 d.240.1.1,e.8.1.7 90378,90379 1ymiA 334 4.38e+01 1r5jA 337 4.41e+01 c.77.1.5 97097 1nz0A 118 4.42e+01 d.14.1.2 86433 1izcA 339 4.43e+01 c.1.12.5 83838 1wojA 214 4.45e+01 1qd1A 325 4.54e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1ei5A 520 4.54e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1jdw 423 4.57e+01 1jdw d.126.1.2 41129 1c3pA 375 4.58e+01 1c3pA c.42.1.2 32606 2f46A 156 4.65e+01 1mzhA 225 4.69e+01 c.1.10.1 79698 1bueA 265 4.70e+01 1btl e.3.1.1 42727 1oj4A 283 4.71e+01 d.14.1.5,d.58.26.5 93083,93084 1ykdA 398 4.74e+01 1gt91 357 4.88e+01 1in6A 334 4.98e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 2eshA 118 5.00e+01 2csbA 519 5.04e+01 1kid 203 5.04e+01 1derA c.8.5.1 30771 1i7wA 538 5.13e+01 3bct a.118.1.1 61909 2h3bA 494 5.24e+01 1y0yA 353 5.32e+01 1sfuA 75 5.38e+01 a.4.5.19 105503 1oglA 283 5.40e+01 a.204.1.1 92922 2afaA 425 5.46e+01 1r59O 505 5.50e+01 1okjA 251 5.51e+01 c.55.1.9,c.55.1.9 103998,103999 1ro0A 216 5.54e+01 d.264.1.2 97664 1cpt 412 5.59e+01 1cpt a.104.1.1 18968 1j6wA 175 5.59e+01 1j98A d.185.1.2 62663 1b0uA 262 5.70e+01 1b0uA c.37.1.12 32370 1qj2C 285 5.73e+01 1qj2C 1xfoA 357 5.74e+01 1y3nA 490 5.79e+01 1w2wA 211 5.87e+01 c.124.1.5 109130 2bnfB 241 5.91e+01 2cglA 489 5.91e+01 2cmxA 118 5.97e+01 1t1gA 364 6.05e+01 c.41.1.2 106246 1jbkA 195 6.05e+01 c.37.1.20 71631 2bmaA 470 6.06e+01 1sh8A 154 6.11e+01 d.38.1.5 105549 1qyaA 307 6.11e+01 d.21.1.2,d.21.1.2 104653,104654 1sffA 426 6.17e+01 c.67.1.4 105482 1pztA 286 6.26e+01 c.68.1.2 95470 2abwA 227 6.27e+01 1zljA 78 6.32e+01 1sdjA 310 6.33e+01 d.21.1.2,d.21.1.2 98807,98808 2as9A 210 6.39e+01 1vfsA 386 6.43e+01 b.49.2.2,c.1.6.1 108584,108585 1hq0A 295 6.47e+01 1hzgA d.194.1.1 61122 1b8oA 284 6.47e+01 1b8oA c.56.2.1 33762 1g7dA 106 6.64e+01 1g7dA a.71.1.1 18318 1itcA 516 6.65e+01 b.3.1.1,c.1.8.1 83705,83706 2bneA 241 6.68e+01 1zc6A 305 6.73e+01 1wybA 392 6.74e+01 1yw5A 177 6.81e+01 2f9lA 199 6.95e+01 1s1dA 331 6.96e+01 b.67.3.1 98344 1z47A 355 7.03e+01 1pujA 282 7.09e+01 c.37.1.8 88294 1n62C 288 7.21e+01 d.87.2.1,d.145.1.3 80094,80095 1eyvA 156 7.22e+01 1eyvA a.79.1.1 18446 1gefA 123 7.23e+01 1gefA c.52.1.18 60465 1p4wA 99 7.26e+01 a.4.6.2 87783 1a8p 258 7.31e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1vz6A 393 7.34e+01 d.154.1.2 108949 1wrmA 165 7.36e+01 1ix9A 205 7.38e+01 a.2.11.1,d.44.1.1 76899,76900 2a8jA 420 7.46e+01 1wycA 392 7.47e+01 1f2tB 148 7.49e+01 1f2tB 1aozA 552 7.50e+01 1aozA b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1b0nA 111 7.53e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1z21A 112 7.61e+01 1rd5A 262 7.63e+01 1i0hA 205 7.75e+01 1avmA a.2.11.1,d.44.1.1 15760,38685 1z1dA 103 7.91e+01 1pb6A 212 7.92e+01 a.4.1.9,a.121.1.1 88017,88018 1lm6A 215 7.98e+01 d.167.1.1 84628 2aieP 203 7.99e+01 1p7gA 222 8.00e+01 a.2.11.1,d.44.1.1 94223,94224 1uedA 406 8.13e+01 a.104.1.1 99256 1rkd 309 8.16e+01 1rkd c.72.1.1 34928 2ex2A 458 8.19e+01 1wmjA 130 8.21e+01 1gegA 256 8.22e+01 1ybvA c.2.1.2 29888 1nw2A 105 8.23e+01 c.47.1.1 92215 1sx5A 244 8.23e+01 c.52.1.2 99023 1ufmA 84 8.46e+01 a.4.5.47 107816 1uu1A 335 8.51e+01 c.67.1.1 99993 2fnoA 248 8.66e+01 1f1uA 323 8.67e+01 d.32.1.3,d.32.1.3 83200,83201 2fefA 294 8.69e+01 1dpuA 99 8.72e+01 1dpuA a.4.5.16 16150 2gaiA 633 8.85e+01 1cg2A 393 8.87e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1xr4A 509 8.92e+01 1wj5A 120 8.99e+01