# TARGET T0381 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0381.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 175.891 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.002 0.001 0.001 0.001 0.001 0.001 0.995 2 T 0.015 0.023 0.003 0.013 0.004 0.016 0.926 3 A 0.017 0.012 0.015 0.033 0.118 0.064 0.741 4 T 0.022 0.009 0.024 0.047 0.152 0.109 0.637 5 E 0.020 0.010 0.015 0.045 0.240 0.029 0.642 6 P 0.014 0.010 0.019 0.065 0.067 0.044 0.780 7 T 0.014 0.015 0.108 0.148 0.080 0.104 0.530 8 E 0.010 0.020 0.240 0.220 0.118 0.110 0.282 9 K 0.016 0.011 0.230 0.184 0.122 0.174 0.262 10 I 0.021 0.023 0.092 0.104 0.190 0.167 0.403 11 L 0.014 0.023 0.021 0.018 0.232 0.074 0.619 12 P 0.011 0.019 0.016 0.017 0.262 0.153 0.522 13 S 0.006 0.006 0.006 0.009 0.176 0.023 0.774 14 P 0.001 0.002 0.148 0.325 0.091 0.352 0.080 15 D 0.002 0.003 0.153 0.396 0.053 0.350 0.043 16 Y 0.004 0.004 0.097 0.729 0.029 0.076 0.061 17 V 0.003 0.003 0.013 0.913 0.010 0.015 0.043 18 Q 0.004 0.002 0.016 0.925 0.011 0.020 0.022 19 S 0.003 0.001 0.018 0.951 0.005 0.016 0.007 20 L 0.001 0.001 0.002 0.987 0.002 0.004 0.003 21 A 0.001 0.001 0.001 0.993 0.001 0.004 0.001 22 R 0.001 0.001 0.001 0.990 0.001 0.009 0.001 23 G 0.001 0.001 0.001 0.994 0.001 0.004 0.001 24 L 0.001 0.001 0.001 0.998 0.001 0.001 0.001 25 A 0.001 0.001 0.001 0.997 0.001 0.002 0.001 26 V 0.001 0.001 0.001 0.996 0.001 0.004 0.001 27 I 0.001 0.001 0.001 0.990 0.001 0.008 0.001 28 R 0.001 0.001 0.002 0.955 0.001 0.042 0.001 29 C 0.001 0.001 0.008 0.872 0.003 0.107 0.009 30 F 0.004 0.006 0.026 0.788 0.037 0.085 0.053 31 D 0.008 0.005 0.068 0.495 0.061 0.175 0.190 32 H 0.005 0.003 0.121 0.407 0.097 0.287 0.080 33 R 0.007 0.005 0.097 0.242 0.157 0.351 0.141 34 N 0.010 0.005 0.111 0.074 0.245 0.304 0.250 35 Q 0.024 0.007 0.092 0.080 0.282 0.269 0.245 36 R 0.059 0.026 0.076 0.061 0.177 0.232 0.370 37 R 0.109 0.077 0.011 0.029 0.211 0.025 0.537 38 T 0.075 0.052 0.004 0.026 0.040 0.009 0.795 39 L 0.001 0.001 0.022 0.967 0.001 0.004 0.005 40 S 0.001 0.001 0.014 0.982 0.001 0.002 0.001 41 D 0.001 0.001 0.003 0.995 0.001 0.001 0.001 42 V 0.001 0.001 0.001 0.998 0.001 0.001 0.001 43 A 0.001 0.001 0.001 0.995 0.001 0.003 0.001 44 R 0.001 0.001 0.001 0.984 0.001 0.014 0.001 45 A 0.001 0.001 0.003 0.915 0.003 0.074 0.004 46 T 0.001 0.002 0.006 0.468 0.024 0.481 0.018 47 D 0.001 0.001 0.006 0.043 0.051 0.807 0.093 48 L 0.002 0.006 0.003 0.010 0.162 0.014 0.803 49 T 0.005 0.007 0.009 0.028 0.051 0.014 0.886 50 R 0.003 0.002 0.039 0.767 0.080 0.066 0.043 51 A 0.001 0.001 0.015 0.938 0.012 0.018 0.015 52 T 0.001 0.001 0.006 0.977 0.002 0.006 0.007 53 A 0.001 0.001 0.001 0.995 0.001 0.001 0.002 54 R 0.001 0.001 0.001 0.997 0.001 0.001 0.001 55 R 0.001 0.001 0.001 0.997 0.001 0.002 0.001 56 F 0.001 0.001 0.001 0.995 0.001 0.004 0.001 57 L 0.001 0.001 0.001 0.997 0.001 0.002 0.001 58 L 0.001 0.001 0.001 0.996 0.001 0.004 0.001 59 T 0.001 0.001 0.001 0.997 0.001 0.003 0.001 60 L 0.001 0.001 0.001 0.993 0.001 0.005 0.001 61 V 0.001 0.001 0.003 0.984 0.001 0.010 0.001 62 E 0.001 0.001 0.004 0.925 0.003 0.064 0.002 63 L 0.002 0.001 0.008 0.300 0.009 0.674 0.007 64 G 0.004 0.001 0.003 0.021 0.033 0.905 0.033 65 Y 0.212 0.012 0.018 0.027 0.165 0.062 0.504 66 V 0.782 0.019 0.010 0.015 0.034 0.008 0.132 67 A 0.783 0.011 0.005 0.010 0.028 0.009 0.153 68 T 0.793 0.036 0.004 0.006 0.035 0.009 0.118 69 D 0.342 0.008 0.009 0.004 0.121 0.091 0.425 70 G 0.017 0.001 0.026 0.003 0.177 0.704 0.071 71 S 0.042 0.003 0.040 0.006 0.225 0.551 0.134 72 A 0.278 0.023 0.040 0.008 0.205 0.169 0.278 73 F 0.777 0.027 0.007 0.005 0.035 0.028 0.122 74 W 0.814 0.020 0.005 0.007 0.029 0.014 0.112 75 L 0.638 0.054 0.002 0.010 0.052 0.005 0.239 76 T 0.114 0.010 0.002 0.024 0.041 0.006 0.804 77 P 0.001 0.001 0.024 0.936 0.007 0.016 0.016 78 R 0.001 0.001 0.018 0.969 0.002 0.008 0.002 79 V 0.001 0.001 0.019 0.975 0.001 0.004 0.001 80 L 0.001 0.001 0.006 0.986 0.001 0.006 0.001 81 E 0.001 0.001 0.003 0.974 0.001 0.020 0.001 82 L 0.001 0.001 0.004 0.916 0.001 0.077 0.002 83 G 0.001 0.001 0.005 0.935 0.003 0.043 0.012 84 Y 0.001 0.001 0.015 0.953 0.005 0.014 0.011 85 S 0.001 0.001 0.043 0.917 0.004 0.028 0.007 86 Y 0.001 0.001 0.049 0.880 0.003 0.060 0.006 87 L 0.002 0.002 0.081 0.824 0.011 0.068 0.012 88 S 0.003 0.002 0.096 0.638 0.016 0.221 0.024 89 S 0.002 0.001 0.059 0.485 0.032 0.377 0.044 90 L 0.006 0.008 0.019 0.161 0.180 0.098 0.528 91 S 0.004 0.003 0.017 0.031 0.040 0.049 0.856