# List of top-scoring protein chains for T0381.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g7uA 257 3.29e-16 1mkmA 249 1.53e-11 a.4.5.33,d.110.2.2 79242,79243 1q1hA 110 3.18e-05 a.4.5.41 95580 1ku9A 152 1.06e-03 a.4.5.36 77544 2fbhA 146 1.13e-03 1j75A 67 1.36e-03 a.4.5.19 62673 2b0lA 102 1.88e-03 1r22A 122 2.10e-03 a.4.5.5 104777 1qbjA 81 2.38e-03 1qbjA a.4.5.19 16155 2acjA 66 2.71e-03 1i1gA 141 3.00e-03 a.4.5.32,d.58.4.2 65982,65983 1qgpA 77 3.12e-03 1qbjA a.4.5.19 16158 1ft9A 222 3.65e-03 1ft9A a.4.5.4,b.82.3.1 16107,28131 1o5lA 213 6.02e-03 b.82.3.2 92506 1r1tA 122 6.08e-03 a.4.5.5 104769 1u2wA 122 9.22e-03 2a61A 145 1.21e-02 2cfxA 144 1.25e-02 1ri7A 171 1.83e-02 a.4.5.32,d.58.4.2 97504,97505 1ulyA 192 1.93e-02 1lj9A 144 2.14e-02 a.4.5.28 78035 1sfxA 109 2.41e-02 a.4.5.50 105505 2fnaA 357 2.92e-02 1v4rA 102 3.11e-02 1lnwA 147 3.66e-02 a.4.5.28 78104 2ethA 154 3.76e-02 1hw5A 210 4.39e-02 2cgpA a.4.5.4,b.82.3.2 16098,28137 1r7jA 95 4.60e-02 a.4.5.49 104836 1o3sA 200 5.50e-02 a.4.5.4,b.82.3.2 86609,86610 1wsuA 124 6.29e-02 1lvaA 258 6.39e-02 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2dbbA 151 6.77e-02 1i6xA 209 7.58e-02 a.4.5.4,b.82.3.2 83673,83674 1i5zA 209 7.64e-02 a.4.5.4,b.82.3.2 83669,83670 1g6nA 210 7.67e-02 2cgpA a.4.5.4,b.82.3.2 16100,28139 1o3tA 200 8.26e-02 a.4.5.4,b.82.3.2 86611,86612 1s3jA 155 8.56e-02 a.4.5.28 98437 1cgpA 205 9.60e-02 a.4.5.4,b.82.3.2 16096,28135 1rxtA 496 9.67e-02 1bia 321 1.07e-01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1j5yA 187 1.42e-01 a.4.5.1,d.94.2.1 71592,71593 1xnpA 202 1.95e-01 1ruoA 209 2.04e-01 2cgpA a.4.5.4,b.82.3.2 16105,28144 1tw3A 360 2.30e-01 a.4.5.29,c.66.1.12 107373,107374 1rr7A 129 2.49e-01 a.4.1.14 105075 1ylfA 149 3.18e-01 1oryA 130 4.16e-01 a.24.19.1 93466 1orjA 130 4.20e-01 a.24.19.1 93456 2fxaA 207 4.49e-01 2cg4A 152 4.51e-01 2gauA 232 5.10e-01 2givA 295 5.11e-01 1r1uA 106 5.50e-01 a.4.5.5 104771 1mzbA 136 6.15e-01 a.4.5.42 91497 1p6rA 82 6.21e-01 a.4.5.39 94187 1fp2A 352 6.52e-01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1b1bA 140 6.78e-01 1bi0 a.4.5.24,a.76.1.1 16215,18421 2fu4A 83 7.25e-01 2cohA 202 7.43e-01 1qzzA 374 9.30e-01 a.4.5.29,c.66.1.12 96719,96720 1res 43 9.63e-01 1ret a.4.1.2 16023 1bw6A 56 1.03e+00 1bw6A a.4.1.7 16052 1fx7A 230 1.07e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1wdvA 152 1.11e+00 2h6bA 250 1.19e+00 1f5tA 121 1.31e+00 1bi0 a.4.5.24,a.76.1.1 16203,18409 1xn7A 78 1.47e+00 1hw1A 239 1.51e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1e2xA 243 1.51e+00 1e2xA a.4.5.6,a.78.1.1 16113,18443 1oyiA 82 1.52e+00 a.4.5.19 93729 2cw8A 537 1.53e+00 2csbA 519 1.88e+00 1hlvA 131 1.90e+00 a.4.1.7,a.4.1.7 65854,65855 1p4xA 250 2.44e+00 a.4.5.28,a.4.5.28 87784,87785 1eyhA 144 2.53e+00 1eduA a.118.9.1 19214 1eduA 149 2.66e+00 1eduA a.118.9.1 19215 1m7kA 99 2.75e+00 a.7.7.1 74573 1xcvA 139 3.01e+00 1inzA 148 3.02e+00 1eduA a.118.9.1 62610 1h0aA 158 3.14e+00 a.118.9.1 76434 2bjcA 62 3.23e+00 1wojA 214 3.36e+00 1vhkA 268 3.55e+00 b.122.1.2,c.116.1.5 100680,100681 1sd6A 123 3.82e+00 a.4.5.39 98803 1je8A 82 4.03e+00 a.4.6.2 77108 1zx4A 192 4.22e+00 1pxgA 382 4.29e+00 c.1.20.1 95287 2cw5A 255 4.53e+00 1okrA 123 4.59e+00 a.4.5.39 93269 1fzpB 123 4.70e+00 1fznD a.4.5.28 19008 1y0uA 96 4.70e+00 2frhA 127 4.82e+00 2br2A 275 5.07e+00 2dtr 226 5.25e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1g3tA 226 5.40e+00 a.4.5.24,a.76.1.1,b.34.1.2 65127,65128,65129 1xs9A 132 5.41e+00 1bl0A 129 5.50e+00 1d5yA a.4.1.8,a.4.1.8 16053,16054 1c0wA 225 5.52e+00 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2tdx 226 5.69e+00 1bi0 a.4.5.24,a.76.1.1 16201,18407 1p92A 226 5.84e+00 a.4.5.24,a.76.1.1,b.34.1.2 104085,104086,104087 1g3yA 226 5.95e+00 a.4.5.24,a.76.1.1,b.34.1.2 65136,65137,65138 1xd7A 145 6.10e+00 a.4.5.55 109566 1m62A 87 6.11e+00 a.7.7.1 74520 2ev0A 142 6.17e+00 1wkd 386 6.55e+00 1pud c.1.20.1 29664 1efzA 386 6.56e+00 1pud c.1.20.1 29659 1wke 386 6.59e+00 1pud c.1.20.1 29663 1wkf 386 6.60e+00 1pud c.1.20.1 29662 1ozqA 386 6.61e+00 c.1.20.1 93854 1y5wA 385 6.61e+00 1r5yA 386 6.62e+00 c.1.20.1 97134 2eshA 118 6.95e+00 1fwzA 226 7.05e+00 a.4.5.24,a.76.1.1,b.34.1.2 60077,60078,60079 1on2A 142 7.08e+00 a.4.5.24,a.76.1.1 87103,87104 1sfuA 75 7.44e+00 a.4.5.19 105503 2fnpA 124 7.59e+00 1mw9X 592 7.75e+00 e.10.1.1 91480 1ecl 597 7.81e+00 1ecl e.10.1.1 43238 1cy2A 599 7.94e+00 1ecl e.10.1.1 43241 1z91A 147 8.10e+00 2es9A 115 8.27e+00 1lccA 51 8.34e+00 1pru a.35.1.5 17110 1a6s 87 8.37e+00 1a6s a.61.1.4 18134 1uxc 65 8.62e+00 1uxc a.35.1.5 17119 1xd2C 484 8.70e+00 1bkdS 477 8.70e+00 1bkdS a.117.1.1 19111 1xd4A 852 8.70e+00 1nvvS 481 8.70e+00 a.117.1.1 86279 1xdvA 847 8.70e+00 1jekA 42 9.10e+00 1jekA h.3.2.1 62920 1h0hA 977 9.29e+00 b.52.2.2,c.81.1.1 76435,76436 1am9A 82 9.66e+00 1am9A a.38.1.1 17140 1lqc 56 1.01e+01 1pru a.35.1.5 17109 1jgsA 138 1.04e+01 a.4.5.28 66683 1l1mA 62 1.12e+01 a.35.1.5 73474 2a4dA 160 1.19e+01 1lwuC 323 1.22e+01 d.171.1.1,h.1.8.1 74312,74313 1umqA 81 1.22e+01 a.4.1.12 99625 2h6cA 232 1.33e+01 1cjgA 62 1.35e+01 1pru a.35.1.5 17112 1zybA 232 1.36e+01 1b0nA 111 1.47e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1wi3A 71 1.60e+01 1ysyA 85 1.63e+01 1vl1A 232 1.66e+01 c.124.1.1 108707 2ahmA 88 1.66e+01 1mjbA 278 1.67e+01 d.108.1.1 79192 1n4tA 219 1.67e+01 d.61.1.3 91671 1pbtA 244 1.70e+01 c.124.1.1 94416 1j7gA 144 1.70e+01 c.110.1.1 84130 1zljA 78 1.75e+01 1mjaA 278 1.77e+01 d.108.1.1 79191 1z56A 246 1.82e+01 1fy7A 278 1.86e+01 1fy7A d.108.1.1 40817 1mj9A 278 1.88e+01 d.108.1.1 79190 1ogyA 802 1.93e+01 b.52.2.2,c.81.1.1 92952,92953 2cmxA 118 1.99e+01 1w19A 160 2.01e+01 1j0rA 122 2.02e+01 a.4.5.7 90745 1bm9A 122 2.03e+01 1bm9A a.4.5.7 16116 1nzpA 87 2.03e+01 a.60.6.1 92385 1zlkA 95 2.04e+01 1n6zA 105 2.15e+01 d.263.1.1 85369 1e08A 371 2.34e+01 i.4.1.1 45914 1l3wA 546 2.35e+01 b.1.6.1,b.1.6.1,b.1.6.1,b.1.6.1,b.1.6.1 73553,73554,73555,73556,73557 1s7oA 113 2.37e+01 a.4.13.3 105354 1w8jA 766 2.40e+01 1w7jA 795 2.41e+01 2ba1A 179 2.41e+01 2f8xC 434 2.42e+01 2cwoA 197 2.43e+01 1u9lA 70 2.52e+01 a.60.4.2 107751 1ldkB 366 2.52e+01 a.4.5.34,e.40.1.1 73852,73853 1zr4A 183 2.60e+01 1repC 251 2.60e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1r7lA 110 2.61e+01 d.277.1.1 104837 1kftA 78 2.63e+01 a.60.2.3 77375 1wfpA 74 2.65e+01 1wclA 76 2.65e+01 1hfeL 421 2.70e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1z05A 429 2.74e+01 1j7dA 145 2.91e+01 1jatB d.20.1.1 62680 1lfpA 249 2.98e+01 e.39.1.1 73885 1d8lA 149 2.99e+01 1hjp a.60.2.1,b.40.4.2 17948,25267 1x2mA 64 3.05e+01 1gdtA 183 3.08e+01 2rslA a.4.1.2,c.53.1.1 16021,33348 2a3lA 701 3.09e+01 2cv8A 180 3.12e+01 1wjhA 76 3.16e+01 1nmuB 104 3.25e+01 d.79.3.1 80666 1t0kB 105 3.26e+01 d.79.3.1 106215 1w99A 558 3.32e+01 2gm3A 175 3.36e+01 1c5dB 215 3.37e+01 1igtB b.1.1.1,b.1.1.2 20415,21387 2dfsA 1080 3.39e+01 2fbiA 142 3.41e+01 1jlwA 219 3.45e+01 a.45.1.1,c.47.1.5 71741,71742 1t9hA 307 3.54e+01 1b8sA 504 3.55e+01 1b8sA c.3.1.2,d.16.1.1 30335,37866 1cc2A 504 3.58e+01 1b8sA c.3.1.2,d.16.1.1 30337,37868 1cboA 504 3.59e+01 1b8sA c.3.1.2,d.16.1.1 30336,37867 1n4wA 504 3.60e+01 c.3.1.2,d.16.1.1 91676,91677 2beoA 236 3.68e+01 1hjdA 101 3.68e+01 b.34.2.1 65846 1ijhA 504 3.72e+01 c.3.1.2,d.16.1.1 66161,66162 1i1jA 108 3.80e+01 1i1jA b.34.2.1 61531 1zguA 139 3.81e+01 2bgcA 238 3.82e+01 1t95A 240 3.98e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1j97A 211 4.08e+01 1f5sA c.108.1.4 62753 1l7pA 211 4.09e+01 c.108.1.4 73670 1l7mA 211 4.10e+01 c.108.1.4 73664 1j3uA 468 4.17e+01 a.127.1.1 84078 1omiA 248 4.17e+01 b.82.3.3,a.4.5.4 87079,87080 1yna 194 4.17e+01 1axkA b.29.1.11 24335 2fq4A 192 4.21e+01 1a04A 215 4.25e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1bf2 750 4.26e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1oq1A 223 4.33e+01 b.29.1.17 93408 1xmwA 178 4.33e+01 2gm4A 183 4.35e+01 1vz0A 230 4.38e+01 a.4.14.1,d.268.1.1 108929,108930 1ad6 185 4.44e+01 1guxA a.74.1.3 18390 1p9qC 256 4.49e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1yd6A 99 4.60e+01 1tie 172 4.77e+01 1wba b.42.4.1 25592 1jkoC 52 4.83e+01 a.4.1.2 66809 2drwA 363 4.84e+01 1opc 110 4.85e+01 1opc a.4.6.1 16231 1mejA 223 4.88e+01 c.65.1.1 79029 2cwjA 123 4.89e+01 1oafA 261 4.93e+01 a.93.1.1 86734 2ghcX 261 4.95e+01 1gs5A 258 4.96e+01 c.73.1.2 70395 2cl4X 261 4.97e+01 2da1A 70 4.99e+01 1oa8A 133 4.99e+01 b.145.1.1 92698 1udlA 98 5.29e+01 b.34.2.1 99212 1odd 118 5.37e+01 1opc a.4.6.1 16232 1n73C 330 5.41e+01 d.171.1.1,h.1.8.1 80217,80218 1xexB 172 5.45e+01 1ufmA 84 5.48e+01 a.4.5.47 107816 1rztA 331 5.64e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2bcqA 335 5.67e+01 1g7dA 106 5.71e+01 1g7dA a.71.1.1 18318 487dI 135 5.73e+01 1rl2A i.1.1.2 45836 2dboA 148 5.78e+01 1rl2A 137 5.83e+01 1rl2A b.34.5.3,b.40.4.5 24610,25342 1xsnA 335 5.89e+01 1xewY 172 5.93e+01 2az0A 73 5.95e+01 2c2vC 142 5.97e+01 1ldjA 760 6.04e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1meoA 209 6.20e+01 c.65.1.1 79035 2f2eA 146 6.21e+01 2cdqA 510 6.33e+01 1nuuA 252 6.33e+01 c.26.1.3 86209 1zl8B 54 6.40e+01 1ic7H 114 6.41e+01 1f3rB b.1.1.1 62258 2aehA 369 6.64e+01 1u6gA 776 6.66e+01 1ic4H 114 6.75e+01 1f3rB b.1.1.1 62251 1hjp 203 6.77e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16274,17947,25266 1oqvA 192 6.77e+01 d.24.1.2 87320 1ic5H 114 6.84e+01 1f3rB b.1.1.1 62254 1q55A 880 6.90e+01 i.20.1.1 95862 1jrhH 219 7.01e+01 1igtB b.1.1.1,b.1.1.2 20223,21235 1zlyA 203 7.13e+01 1d0qA 103 7.13e+01 1d0qA g.41.3.2 45208 1j1xH 114 7.20e+01 b.1.1.1 77063 1iynA 295 7.25e+01 a.93.1.1 90722 1bh9B 89 7.30e+01 1bh9B a.22.1.3 16485 1fw1A 216 7.36e+01 a.45.1.1,c.47.1.5 60051,60052 1guxA 218 7.37e+01 1guxA a.74.1.3 18388 1pguA 615 7.74e+01 b.69.4.1,b.69.4.1 88069,88070 2b66D 173 7.74e+01 1yyvA 131 7.78e+01 1lqyA 184 7.82e+01 d.167.1.1 74212 1yl3D 178 7.86e+01 2b5aA 77 7.91e+01 2arkA 188 7.94e+01 2ghiA 260 7.95e+01 1qezA 173 7.95e+01 2prd b.40.5.1 25410 2d1tA 548 7.98e+01 2al6A 375 8.00e+01 2as8A 222 8.01e+01 1bjaA 95 8.02e+01 1bjaA a.4.5.9 16122 2d1sA 548 8.02e+01 1vd6A 224 8.05e+01 1i1sA 96 8.06e+01 1bjaA a.4.5.9 16124 1sumB 235 8.08e+01 a.7.12.1 106025 2aj4A 548 8.10e+01 1xsvA 113 8.16e+01 1wfkA 88 8.35e+01 2fp4B 395 8.38e+01 1eudB 396 8.39e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 1u2xA 474 8.49e+01 c.72.1.3 107622 1b0uA 262 8.59e+01 1b0uA c.37.1.12 32370 1w55A 371 8.90e+01 2brqA 97 8.97e+01