# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fhqA 141 7.17e-18 1g79A 218 2.56e-15 1ci0A b.45.1.1 25752 1dnlA 199 2.91e-15 1ci0A b.45.1.1 25753 1nrgA 261 4.48e-11 b.45.1.1 80694 1rfeA 162 7.89e-10 1t9mA 214 1.33e-09 2fg9A 178 3.20e-09 1ty9A 222 1.81e-08 2asfA 137 2.41e-07 1ci0A 228 1.72e-06 1ci0A b.45.1.1 25750 1vl7A 157 2.20e-06 b.45.1.1 108732 2aq6A 147 3.14e-06 1flmA 122 1.13e-05 1axj b.45.1.1 25747 1axj 122 1.30e-05 1axj b.45.1.1 25749 1w9aA 147 1.31e-05 1xxoA 147 1.58e-05 2furA 209 1.24e-04 2arzA 247 1.99e-03 1xhnA 184 2.37e-03 1w3oA 216 3.42e-03 1ejeA 192 1.02e-02 1ejeA b.45.1.2 25757 2bgiA 272 1.14e-01 1pse 69 4.12e+00 1pse b.34.4.2 24595 1ww7A 160 4.13e+00 1pfxL 146 4.71e+00 1cfi g.3.11.1,g.3.11.1,g.32.1.1 44207,44208,44973 1j58A 385 7.20e+00 b.82.1.2 71531 1ujqA 305 7.72e+00 c.1.12.7 99463 1vmaA 306 9.71e+00 a.24.13.1,c.37.1.10 108887,108888 1qg3A 195 9.73e+00 1qg3A b.1.2.1,b.1.2.1 21993,21994 1qp2A 70 1.15e+01 1pse b.34.4.2 24596 1nnt 328 1.36e+01 1nnt c.94.1.2 35884 1j27A 102 1.37e+01 d.58.50.1 90778 1om0A 274 1.50e+01 c.1.8.5 87058 1lepA 99 1.57e+01 1lepA b.35.1.1 24649 1jeyA 609 1.74e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1ye8A 178 2.00e+01 1j5kA 89 2.06e+01 d.51.1.1 71565 1jeqA 609 2.10e+01 1jeqA a.140.2.1,b.131.1.1,c.62.1.3 64748,90366,90367 1mwsA 646 2.12e+01 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 1nftA 329 2.16e+01 1nnt c.94.1.2 35881 1klnA 605 2.17e+01 1xwl c.55.3.5,e.8.1.1 33693,42986 1z08A 170 2.18e+01 1ofuA 320 2.19e+01 c.32.1.1,d.79.2.1 86972,86973 1rq2A 382 2.20e+01 c.32.1.1,d.79.2.1 105048,105049 1uirA 314 2.23e+01 c.66.1.17 99429 1rthA 560 2.29e+01 1rthA c.55.3.1,e.8.1.2 33576,43028 1tfaA 329 2.31e+01 1nnt c.94.1.2 35880 1w66A 232 2.40e+01 1n9lA 109 2.43e+01 d.110.3.6 85468 1igwA 434 2.44e+01 c.1.12.7 62370 1vphA 149 2.45e+01 1dttA 560 2.48e+01 1rthA c.55.3.1,e.8.1.2 33611,43088 1y08A 323 2.50e+01 1oj4A 283 2.51e+01 d.14.1.5,d.58.26.5 93083,93084 1ne9A 335 2.51e+01 d.108.1.4,d.108.1.4 91839,91840 1zvkA 358 2.62e+01 2exnA 136 2.68e+01 1x88A 359 2.78e+01 1hniA 558 2.78e+01 1rthA c.55.3.1,e.8.1.2 33586,43044 1jlyA 304 2.83e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1oa4A 222 2.84e+01 b.29.1.11 86731 1f08A 148 2.85e+01 1f08A d.89.1.2 59564 2ag5A 246 2.87e+01 2ucz 165 2.88e+01 1u9aA d.20.1.1 38330 1iejA 332 2.90e+01 1nnt c.94.1.2 62328 1kijA 390 3.01e+01 d.14.1.3,d.122.1.2 72514,72515 2cr9A 139 3.12e+01 1pvtA 238 3.13e+01 c.74.1.1 95189 1ta3A 274 3.17e+01 c.1.8.5 106731 1khbA 625 3.31e+01 c.91.1.1,c.109.1.1 68606,68607 1w8oA 601 3.36e+01 1d8yA 605 3.38e+01 1xwl c.55.3.5,e.8.1.1 33684,42977 1bbpA 173 3.44e+01 1bbpA b.60.1.1 27147 2ashA 381 3.47e+01 1wcqA 601 3.53e+01 1lk2A 274 3.58e+01 b.1.1.2,d.19.1.1 91056,91057 1kpuA 274 3.59e+01 b.1.1.2,d.19.1.1 84456,84457 1ioaA 240 3.59e+01 1led b.29.1.1 24168 1fzkA 274 3.59e+01 1agdA b.1.1.2,d.19.1.1 60149,60150 2fp8A 322 3.60e+01 1fsz 372 3.61e+01 1fsz c.32.1.1,d.79.2.1 31750,39802 1k0mA 241 3.64e+01 a.45.1.1,c.47.1.5 67949,67950 1k0nA 241 3.67e+01 a.45.1.1,c.47.1.5 67953,67954 2cwzA 141 3.74e+01 2azeA 155 3.74e+01 1g7pA 274 3.79e+01 b.1.1.2,d.19.1.1 70153,70154 1o5oA 221 3.80e+01 c.61.1.1 92509 1zzkA 82 3.81e+01 1eur 365 3.85e+01 1eut b.68.1.1 27607 1zt3A 80 3.88e+01 1fkoA 543 3.95e+01 1rthA c.55.3.1,e.8.1.2 33612,43094 1gt91 357 3.98e+01 2fauA 341 4.17e+01 1y0hA 105 4.19e+01 1bqnA 558 4.24e+01 1rthA c.55.3.1,e.8.1.2 33599,43064 1eetA 557 4.32e+01 1rthA c.55.3.1,e.8.1.2 33608,43078 1mhnA 59 4.32e+01 b.34.9.1 84964 1w0dA 337 4.33e+01 1qm4A 396 4.36e+01 1mxb d.130.1.1,d.130.1.1,d.130.1.1 41350,41351,41352 1euu 605 4.45e+01 1eut b.1.18.2,b.18.1.1,b.68.1.1 21892,23713,27610 1jlxA 304 4.47e+01 1jlyA b.42.3.1,b.42.3.1 25583,25584 1wi6A 88 4.47e+01 1e2tA 284 4.50e+01 1e2tA d.3.1.5 37121 1dzkA 157 4.51e+01 1obpA b.60.1.1 27096 1wj9A 211 4.57e+01 1b54 257 4.59e+01 1ct5A c.1.6.2 28664 2hmiA 558 4.63e+01 1rthA c.55.3.1,e.8.1.2 33604,43106 1y0yA 353 4.66e+01 1ecfB 504 4.81e+01 1ecfB c.61.1.1,d.153.1.1 34054,41821 1jb0F 164 4.82e+01 1jb0F f.23.16.1 62825 1hmvA 560 4.88e+01 1rthA c.55.3.1,e.8.1.2 33587,43046 1ksyA 154 4.97e+01 d.89.1.2 72948 2a5sA 284 5.02e+01 1rz3A 201 5.25e+01 c.37.1.6 98132 1bypA 99 5.25e+01 1plc b.6.1.1 22858 1o4tA 133 5.29e+01 b.82.1.9 86622 1s2wA 295 5.32e+01 c.1.12.7 98407 1ipd 345 5.51e+01 1cnzA c.77.1.1 35038 1b7gO 340 5.72e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 1hrhA 136 5.79e+01 1rthA c.55.3.1 33577 1cm7A 363 5.80e+01 1cnzA c.77.1.1 35063 1b7yA 350 5.90e+01 1pysA d.104.1.1 40776 1ecfA 504 5.92e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1agqA 135 5.96e+01 1agqA g.17.1.2 44789 2bwqA 129 6.01e+01 1p3wA 404 6.03e+01 c.67.1.3 87752 2bkqA 212 6.08e+01 1g6aA 271 6.18e+01 1btl e.3.1.1 42704 1iu8A 206 6.27e+01 c.56.4.1 71436 1vqqA 646 6.28e+01 1dv8A 128 6.29e+01 1ixxB d.169.1.1 42352 1g5vA 88 6.31e+01 1g5vA b.34.9.1 60292 1f37A 110 6.35e+01 1f37A c.47.1.11 33088 1yt3A 375 6.42e+01 1msaA 109 6.47e+01 1b2pA b.78.1.1 27987 1vrtA 560 6.50e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1nmeA 146 6.58e+01 c.17.1.1 85874 1tr8A 102 6.59e+01 1tx4B 178 6.63e+01 1ctqA c.37.1.8 32045 1ct5A 256 6.70e+01 1ct5A c.1.6.2 28663 1bywA 110 6.73e+01 1bywA d.110.3.6 40912 1i9yA 347 6.76e+01 1i9yA d.151.1.2 62101 1i9zA 347 6.79e+01 1i9yA d.151.1.2 62102 1a8p 258 6.82e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 2etvA 346 6.83e+01 1xn9A 101 6.86e+01 1uarA 285 6.88e+01 c.46.1.2,c.46.1.2 107762,107763 1l0qA 391 6.90e+01 b.1.3.1,b.69.2.3 77644,77645 1qbeA 132 6.90e+01 1qbeA d.85.1.1 40138 1bo4A 168 7.06e+01 1bo4A d.108.1.1 40798 1ad3A 452 7.08e+01 1ad3A c.82.1.1 35335 1f3lA 321 7.08e+01 1g6q2 c.66.1.6 59630 1aim 215 7.21e+01 1cs8A d.3.1.1 37044 1ag6 99 7.24e+01 1plc b.6.1.1 22857 1on0A 158 7.25e+01 d.108.1.1 87095 1xfoA 357 7.35e+01 2gw8A 114 7.37e+01 2ai4A 119 7.37e+01 1xfkA 336 7.40e+01 1qhlA 227 7.45e+01 1qhlA c.37.1.12 32382 1bo4B 168 7.46e+01 1bo4A d.108.1.1 40799 1fnuA 221 7.47e+01 3seb b.40.2.2,d.15.6.1 25212,37801 1ucaA 190 7.56e+01 d.124.1.1 88462 1ucdA 190 7.58e+01 d.124.1.1 107767 1pauA 147 7.61e+01 1pauA c.17.1.1 30994 1fggA 261 7.66e+01 1fggA c.68.1.7 34576 1o4uA 285 7.66e+01 c.1.17.1,d.41.2.1 86624,86625 1xtoA 311 7.71e+01 1m7bA 184 7.73e+01 c.37.1.8 74572 2arpA 116 7.77e+01 1bk7A 190 7.78e+01 1bk7A d.124.1.1 41121 1ufhA 180 7.81e+01 d.108.1.1 88485 1uf2C 421 7.93e+01 a.115.1.3,b.19.1.1 99291,99292 1t1gA 364 7.98e+01 c.41.1.2 106246 1b2pA 119 8.00e+01 1b2pA b.78.1.1 27998 1i50K 120 8.08e+01 d.74.3.2 61765 1l1qA 186 8.17e+01 c.61.1.1 77653 1pn2A 280 8.19e+01 d.38.1.4,d.38.1.4 94930,94931 2bgcA 238 8.23e+01 1njhA 119 8.24e+01 b.128.1.1 85787 2b0jA 358 8.43e+01 1e5dA 402 8.50e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1e6pA 499 8.79e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 2av1A 275 8.86e+01 1b1zA 219 8.93e+01 3seb b.40.2.2,d.15.6.1 25216,37805 1ujmA 342 8.95e+01