# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fhqA 141 2.04e-18 1g79A 218 2.27e-16 1ci0A b.45.1.1 25752 1dnlA 199 2.43e-16 1ci0A b.45.1.1 25753 1nrgA 261 1.13e-10 b.45.1.1 80694 2fg9A 178 4.76e-10 1rfeA 162 6.25e-10 1t9mA 214 2.06e-08 1ty9A 222 3.18e-07 1ci0A 228 1.67e-06 1ci0A b.45.1.1 25750 2asfA 137 5.10e-06 1axj 122 5.31e-05 1axj b.45.1.1 25749 1vl7A 157 5.33e-05 b.45.1.1 108732 1w9aA 147 1.41e-04 1xxoA 147 1.52e-04 2aq6A 147 1.68e-04 1flmA 122 2.93e-04 1axj b.45.1.1 25747 2furA 209 6.10e-04 1w3oA 216 1.69e-03 1ejeA 192 4.59e-03 1ejeA b.45.1.2 25757 2etvA 346 3.84e-01 1xhnA 184 5.26e-01 2bgiA 272 7.31e-01 2fauA 341 1.14e+00 1vmeA 410 3.36e+00 c.23.5.1,d.157.1.3 108893,108894 1ak2 233 5.16e+00 1zin c.37.1.1,g.41.2.1 31894,45195 1tq8A 163 5.42e+00 c.26.2.4 107204 1b5l 172 6.50e+00 1b5l a.26.1.3 16900 2bw3A 534 7.98e+00 1zq4A 693 9.47e+00 2arzA 247 9.70e+00 2ampA 304 1.16e+01 1gyfA 62 1.21e+01 1gyfA d.76.1.1 39749 2d93A 134 1.24e+01 1p9uA 302 1.25e+01 b.47.1.4 88001 1syxB 86 1.39e+01 1e25A 282 1.40e+01 1e25A e.3.1.1 42731 1txgA 335 1.52e+01 1j3aA 142 1.53e+01 c.21.1.1 77070 1lvoA 302 1.58e+01 b.47.1.4 74284 1jalA 363 1.65e+01 c.37.1.8,d.15.10.2 84138,84139 1np6A 174 1.71e+01 c.37.1.10 85954 1a31A 538 1.72e+01 1a36A d.163.1.2,e.15.1.1 42170,43263 1qgwC 177 1.72e+01 1qgwC a.1.1.3 15673 1o4uA 285 1.77e+01 c.1.17.1,d.41.2.1 86624,86625 1z4rA 168 1.79e+01 1cpcL 172 1.79e+01 1qgwC a.1.1.3 15646 1pvtA 238 1.80e+01 c.74.1.1 95189 1r17A 343 1.81e+01 b.2.3.4,b.2.3.4 96796,96797 1kgcE 242 1.84e+01 b.1.1.1,b.1.1.2 77386,77387 1xfkA 336 1.85e+01 1idm 343 1.85e+01 1cnzA c.77.1.1 35035 1w0dA 337 1.86e+01 1a35A 538 1.90e+01 1a36A d.163.1.2,e.15.1.1 42171,43264 1xg0C 177 1.91e+01 1z3iX 644 2.01e+01 1k4tA 592 2.06e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 2ag5A 246 2.13e+01 1cpcB 172 2.13e+01 1qgwC a.1.1.3 15644 1zeqX 84 2.19e+01 1a36A 592 2.22e+01 1a36A a.2.8.1,d.163.1.2,e.15.1.1 15715,42173,43266 1fjgP 88 2.35e+01 1emwA d.27.1.1 38444 1rf8B 100 2.35e+01 a.210.1.1 97371 5reqA 727 2.64e+01 1reqA c.1.19.1,c.23.6.1 29632,31259 1pauA 147 2.73e+01 1pauA c.17.1.1 30994 2axjA 242 2.77e+01 1emwA 88 2.78e+01 1emwA d.27.1.1 38448 2fcjA 119 2.87e+01 1ej9A 563 3.00e+01 1a36A d.163.1.2,e.15.1.1 42172,43265 1reqA 727 3.05e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 2b4yA 271 3.32e+01 2fua 215 3.66e+01 2fua c.74.1.1 34977 2ch0A 133 3.67e+01 1jdpA 441 3.68e+01 c.93.1.1 62906 7reqA 727 3.71e+01 1reqA c.1.19.1,c.23.6.1 29616,31243 1tq4A 413 3.72e+01 c.37.1.8 107201 1ipd 345 3.78e+01 1cnzA c.77.1.1 35038 1nvpB 57 3.83e+01 a.32.1.1 92211 1xaa 345 4.15e+01 1cnzA c.77.1.1 35033 1eu3A 210 4.16e+01 1an8 b.40.2.2,d.15.6.1 25206,37795 1t1jA 125 4.26e+01 c.137.1.1 106249 1fua 215 4.30e+01 2fua c.74.1.1 34973 2b8tA 223 4.39e+01 2cuaA 135 4.46e+01 2cuaA b.6.1.2 23039 1e4cP 215 4.53e+01 2fua c.74.1.1 34969 2bnuB 241 4.69e+01 1nmeA 146 4.72e+01 c.17.1.1 85874 1wbpA 397 4.77e+01 1njhA 119 4.78e+01 b.128.1.1 85787 1vc1A 110 4.86e+01 c.13.2.1 108493 2ay1A 394 4.87e+01 1ajsA c.67.1.1 34357 2bwrA 401 5.06e+01 2czvC 120 5.33e+01 1oo0A 147 5.33e+01 d.232.1.1 87182 2bk9A 153 5.34e+01 1r5tA 142 5.34e+01 c.97.1.1 104812 1mqeA 207 5.43e+01 d.113.1.1 91394 1cp3A 277 5.49e+01 1pauA c.17.1.1 30992 1ho1A 242 5.52e+01 1ho1A c.1.24.1 61097 2fcr 173 5.57e+01 1rcf c.23.5.1 31151 1ap8 213 5.78e+01 1ap8 d.86.1.1 40151 1zzkA 82 5.79e+01 1oxsC 353 5.87e+01 b.40.6.3,c.37.1.12 87519,87520 1m1nA 491 5.92e+01 c.92.2.3 78417 1tie 172 5.94e+01 1wba b.42.4.1 25592 2ak4E 245 5.96e+01 1o5uA 101 6.12e+01 b.82.1.8 92518 1gggB 226 6.25e+01 1lst c.94.1.1 35818 1oxwA 373 6.56e+01 c.19.1.3 87539 1n5nA 180 6.62e+01 d.167.1.1 85336 2d0iA 333 6.67e+01 1i3zA 103 6.83e+01 d.93.1.1 83667 1gggA 226 6.90e+01 1lst c.94.1.1 35817 2bb3A 221 7.01e+01 2minA 491 7.16e+01 1qguA c.92.2.3 35609 1fp4A 492 7.28e+01 c.92.2.3 76187 1j58A 385 7.32e+01 b.82.1.2 71531 1snyA 267 7.50e+01 c.2.1.2 105833 1g8kB 133 7.56e+01 1g8jB b.33.1.1 24435 1kqqA 139 7.65e+01 a.4.3.1 72885 1kjnA 157 7.81e+01 c.115.1.1 72614 1mdiA 105 7.88e+01 1erv c.47.1.1 32755 1xwl 580 7.91e+01 1xwl c.55.3.5,e.8.1.1 33708,43001 1pv1A 299 8.01e+01 1af7 274 8.02e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1m7bA 184 8.04e+01 c.37.1.8 74572 1efuA 385 8.18e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 1fxzA 476 8.22e+01 b.82.1.2,b.82.1.2 65059,65060 1uarA 285 8.27e+01 c.46.1.2,c.46.1.2 107762,107763 2b0jA 358 8.35e+01 1mqsA 671 8.40e+01 e.25.1.1 79414 1ww7A 160 8.43e+01 1dr8B 344 8.60e+01 1cnzA c.77.1.1 35052 3minC 491 8.61e+01 1qguA c.92.2.3 35607 1oxxK 353 8.63e+01 b.40.6.3,c.37.1.12 93715,93716 1zglP 249 8.71e+01 1eiwA 111 8.76e+01 1eiwA c.23.3.1 31130 1mwwA 128 8.77e+01 d.80.1.4 91483 2dcnA 311 8.81e+01 2a4vA 159 8.84e+01 1l3iA 192 8.89e+01 c.66.1.22 77676 1s9uA 207 8.98e+01 a.184.1.1 105390