# List of top-scoring protein chains for T0380.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 1.72e-17 1ci0A b.45.1.1 25753 1g79A 218 1.75e-17 1ci0A b.45.1.1 25752 1nrgA 261 8.40e-16 b.45.1.1 80694 2a2jA 246 1.31e-13 1t9mA 214 2.11e-13 1ci0A 228 4.57e-13 1ci0A b.45.1.1 25750 1ty9A 222 6.06e-13 2fhqA 141 3.67e-12 1rfeA 162 4.86e-12 2fg9A 178 9.22e-11 1vl7A 157 6.62e-10 b.45.1.1 108732 2asfA 137 1.22e-08 2aq6A 147 1.60e-08 2arzA 247 2.89e-07 2furA 209 2.25e-06 1w3oA 216 2.93e-05 1wllA 122 3.54e-04 1wlkA 122 3.54e-04 1wliA 122 3.56e-04 1flmA 122 3.57e-04 1axj b.45.1.1 25747 1xhnA 184 6.47e-04 1ejeA 192 1.63e-01 1ejeA b.45.1.2 25757 1yxaA 398 7.50e-01 1wvbA 322 1.93e+00 2aebA 322 2.01e+00 1cf3A 583 8.86e+00 1gpeA c.3.1.2,d.16.1.1 30385,37949 2etvA 346 9.58e+00 1gu6A 452 1.02e+01 a.138.1.3 70575 1pvtA 238 1.20e+01 c.74.1.1 95189 1gxsA 270 1.24e+01 c.69.1.5 76375 1o07A 358 1.26e+01 e.3.1.1 92390 1q5xA 161 1.32e+01 c.8.7.1 95947 1s20A 340 1.34e+01 c.122.1.1 98356 1nxuA 333 1.34e+01 c.122.1.1 86389 1od5A 492 1.71e+01 b.82.1.2,b.82.1.2 86832,86833 1tzgH 232 1.92e+01 1e3pA 757 2.03e+01 1e3hA a.4.9.1,b.40.4.5,d.14.1.4,d.14.1.4,d.52.3.1,d.101.1.1,d.101.1.1 16258,25328,37574,37575,38811,40697,40698 1qrrA 394 2.05e+01 1qrrA c.2.1.2 29824 1i24A 404 2.09e+01 c.2.1.2 83663 1a87 321 2.17e+01 1a87 f.1.1.1 43380 1bw3 125 2.33e+01 1bw4 b.52.1.2 26899 2ffyA 358 2.44e+01 2gukA 120 2.47e+01 1v7rA 186 2.48e+01 c.51.4.1 100482 1oglA 283 2.65e+01 a.204.1.1 92922 1l0gA 358 2.65e+01 e.3.1.1 73400 1fsyA 358 2.65e+01 1gceA e.3.1.1 60016 1my8A 358 2.65e+01 e.3.1.1 85236 1l0eA 358 2.67e+01 e.3.1.1 73396 1l0dA 358 2.69e+01 e.3.1.1 73394 2bgiA 272 2.97e+01 1pse 69 3.09e+01 1pse b.34.4.2 24595 1hcv 117 3.44e+01 1igtB b.1.1.1 20514 1g9eA 117 3.44e+01 b.1.1.1 76216 1x4nA 92 3.46e+01 1regX 122 3.56e+01 1regX d.58.27.1 39406 1j5kA 89 3.57e+01 d.51.1.1 71565 1khmA 89 3.67e+01 1dt4A d.51.1.1 38809 2greA 349 3.93e+01 1zzkA 82 4.05e+01 1ta3A 274 4.10e+01 c.1.8.5 106731 1rflA 172 4.26e+01 c.37.1.8 97384 1tr8A 102 4.44e+01 1ovt 686 4.52e+01 1nnt c.94.1.2,c.94.1.2 35882,35883 2gj8A 172 4.55e+01 1jdqA 98 4.60e+01 d.68.3.3 66559 2d3iA 686 5.06e+01 1vpe 398 5.13e+01 16pk c.86.1.1 35453 1pizA 375 5.15e+01 a.25.1.2 94712 1ku1A 230 5.29e+01 a.118.3.1 72996 1pj0A 375 5.31e+01 a.25.1.2 94714 1amuA 563 5.34e+01 1amuA e.23.1.1 43351 1ko3A 230 5.37e+01 d.157.1.1 90974 1vj1A 363 5.52e+01 b.35.1.2,c.2.1.1 100794,100795 1pm2A 339 5.52e+01 a.25.1.2 94887 1kxrA 339 5.64e+01 d.3.1.3 73175 1on3A 523 5.65e+01 c.14.1.4,c.14.1.4 87107,87108 1yfdA 375 5.72e+01 1fybA 111 5.79e+01 4sgbI g.69.1.1,g.69.1.1 44726,44727 1h9wA 237 5.80e+01 1nls b.29.1.1 60853 1gxiE 73 5.84e+01 b.34.4.2 83373 1eakA 421 5.92e+01 a.20.1.2,d.92.1.11,g.14.1.2,g.14.1.2,g.14.1.2 70093,70094,70095,70096,70097 2av8A 340 5.96e+01 1xikA a.25.1.2 16792 1ribA 375 6.01e+01 1xikA a.25.1.2 16788 1piyA 375 6.04e+01 a.25.1.2 94710 2g8jA 339 6.09e+01 1k8kD 300 6.14e+01 d.198.2.1,d.198.2.1 68309,68310 1mxrA 375 6.23e+01 a.25.1.2 85197 1biqA 375 6.24e+01 1xikA a.25.1.2 16786 2b3nA 159 6.32e+01 1rsrA 375 6.33e+01 a.25.1.2 97815 2d93A 134 6.39e+01 1rnrA 375 6.39e+01 1xikA a.25.1.2 16798 1x5rA 112 6.41e+01 1eoeA 100 6.51e+01 1t1dA d.42.1.2 38638 1av8A 340 6.53e+01 1xikA a.25.1.2 16796 1w0dA 337 6.55e+01 2alxA 340 6.55e+01 1outA 143 6.57e+01 1abwA a.1.1.2 15400 1pfrA 340 6.79e+01 1xikA a.25.1.2 16790 1dglA 237 6.90e+01 1nls b.29.1.1 24133 1q1rA 431 6.91e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1op9A 121 7.13e+01 b.1.1.1 93398 1o54A 277 7.22e+01 c.66.1.13 92482 2cuiA 112 7.23e+01 1azsA 220 7.45e+01 1azsA d.58.29.1 39416 1cs4A 225 7.57e+01 1azsA d.58.29.1 39418 1ukgA 252 7.60e+01 b.29.1.1 99489 1culA 217 7.61e+01 1azsA d.58.29.1 39417 2sli 679 7.77e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1nnt 328 7.80e+01 1nnt c.94.1.2 35884 1l0fA 358 7.86e+01 e.3.1.1 73398 1tuhA 156 8.03e+01 d.17.4.11 107345 1jj2A 239 8.22e+01 1rl2A b.34.5.3,b.40.4.5 63084,63085 1vq0A 302 8.31e+01 1iejA 332 8.53e+01 1nnt c.94.1.2 62328 1tfaA 329 8.74e+01 1nnt c.94.1.2 35880 1kfuL 699 8.76e+01 a.39.1.8,b.14.1.1,d.3.1.3 68571,68572,68573 1ul5A 88 8.99e+01 g.72.1.1 99539