# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 1.19e-17 1ci0A b.45.1.1 25753 1g79A 218 1.87e-17 1ci0A b.45.1.1 25752 1nrgA 261 8.09e-17 b.45.1.1 80694 1ty9A 222 4.97e-14 2fhqA 141 6.79e-14 1rfeA 162 7.47e-14 2fg9A 178 2.65e-12 1vl7A 157 8.98e-12 b.45.1.1 108732 2asfA 137 4.49e-11 1w9aA 147 4.41e-10 2aq6A 147 8.98e-10 2arzA 247 2.86e-09 2furA 209 9.91e-09 1w3oA 216 3.53e-07 1flmA 122 2.78e-06 1axj b.45.1.1 25747 1xhnA 184 4.32e-06 1ejeA 192 9.30e-04 1ejeA b.45.1.2 25757 1ko3A 230 1.41e+00 d.157.1.1 90974 2gukA 120 1.61e+00 2etvA 346 1.62e+00 1zzkA 82 1.91e+00 2d93A 134 2.33e+00 1i24A 404 2.76e+00 c.2.1.2 83663 1ta3A 274 3.56e+00 c.1.8.5 106731 2bgiA 272 3.78e+00 1s2wA 295 4.25e+00 c.1.12.7 98407 1m40A 263 4.33e+00 e.3.1.1 74437 1u69A 163 5.13e+00 d.32.1.7 107699 1o54A 277 5.27e+00 c.66.1.13 92482 1j58A 385 5.34e+00 b.82.1.2 71531 2fgtA 417 5.35e+00 1pvtA 238 6.00e+00 c.74.1.1 95189 1reqA 727 6.35e+00 1reqA c.1.19.1,c.23.6.1 29620,31247 1khtA 192 6.77e+00 c.37.1.1 84401 1q6uA 245 7.12e+00 d.26.1.1 95998 2gdzA 267 7.87e+00 2a1vA 144 8.14e+00 1uhvA 500 8.15e+00 b.71.1.2,c.1.8.3 99402,99403 1q5xA 161 8.67e+00 c.8.7.1 95947 1ye8A 178 9.08e+00 1t1dA 100 9.08e+00 1t1dA d.42.1.2 38637 1dsxA 87 9.66e+00 1t1dA d.42.1.2 38644 1ki9A 192 1.04e+01 c.37.1.1 84404 1amuA 563 1.09e+01 1amuA e.23.1.1 43351 1wj9A 211 1.15e+01 1winA 143 1.16e+01 1q6hA 224 1.24e+01 d.26.1.1 95975 1g5tA 196 1.35e+01 1g5rA c.37.1.11 32366 1jdpA 441 1.37e+01 c.93.1.1 62906 2f46A 156 1.42e+01 1yrbA 262 1.44e+01 1xezA 721 1.49e+01 1kjnA 157 1.51e+01 c.115.1.1 72614 1qfoA 119 1.58e+01 1qfoA b.1.1.1 19708 2b0jA 358 1.58e+01 1wlzA 105 1.61e+01 2dg5B 190 1.64e+01 1dp4A 435 1.73e+01 1dp4A c.93.1.1 35710 1ukgA 252 1.76e+01 b.29.1.1 99489 2cfxA 144 1.79e+01 1sdjA 310 1.83e+01 d.21.1.2,d.21.1.2 98807,98808 1r6lA 239 1.87e+01 d.14.1.4,d.101.1.1 97153,97154 1iejA 332 2.02e+01 1nnt c.94.1.2 62328 1vmaA 306 2.03e+01 a.24.13.1,c.37.1.10 108887,108888 1j09A 468 2.09e+01 a.97.1.1,c.26.1.1 77025,77026 1zsoA 164 2.28e+01 1zymA 258 2.34e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1i0rA 169 2.35e+01 1i0rA b.45.1.2 61489 1azsA 220 2.40e+01 1azsA d.58.29.1 39416 2c2xA 281 2.44e+01 2fcjA 119 2.54e+01 1ualA 274 2.55e+01 c.116.1.4 88383 2c2aA 258 2.66e+01 1vpbA 451 2.67e+01 2be4A 272 2.72e+01 1ql0A 241 2.73e+01 1qaeA d.4.1.2 37139 1nlfA 279 2.75e+01 c.37.1.11 85850 1jhsA 188 2.75e+01 d.107.1.1 84172 1s9rA 410 2.78e+01 d.126.1.4 98758 1jmcA 246 2.78e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1m2kA 249 2.84e+01 c.31.1.5 84754 1w8oA 601 2.85e+01 1e2wA 251 2.85e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1r6xA 395 2.86e+01 b.122.1.3,c.26.1.5 97167,97168 1wf3A 301 2.90e+01 2bo9A 308 2.91e+01 2b4yA 271 3.05e+01 4fiv 113 3.05e+01 1fmb b.50.1.1 26762 1uzmA 247 3.08e+01 1agjA 242 3.12e+01 1agjA b.47.1.1 25827 1wisA 124 3.15e+01 1j2jB 45 3.18e+01 a.7.8.1 84017 1sqwA 188 3.28e+01 1sffA 426 3.32e+01 c.67.1.4 105482 1vkkA 154 3.35e+01 d.109.1.2 108669 1ne9A 335 3.35e+01 d.108.1.4,d.108.1.4 91839,91840 2c4nA 250 3.40e+01 1mkmA 249 3.40e+01 a.4.5.33,d.110.2.2 79242,79243 1ku1A 230 3.45e+01 a.118.3.1 72996 1txgA 335 3.48e+01 1qyaA 307 3.51e+01 d.21.1.2,d.21.1.2 104653,104654 2ffyA 358 3.55e+01 2f8lA 344 3.57e+01 1ys7A 233 3.57e+01 1v6tA 255 3.62e+01 1q1rA 431 3.64e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1on0A 158 3.66e+01 d.108.1.1 87095 1tuhA 156 3.67e+01 d.17.4.11 107345 1vl1A 232 3.70e+01 c.124.1.1 108707 1u94A 356 3.73e+01 c.37.1.11,d.48.1.1 107743,107744 1oapA 109 3.77e+01 d.79.7.1 92706 1uliA 460 3.81e+01 b.33.1.2,d.129.3.3 107921,107922 1ash 150 3.84e+01 1ash a.1.1.2 15622 2h1rA 299 3.86e+01 1b6a 478 3.94e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1i6aA 219 3.96e+01 c.94.1.1 61827 1ywnA 316 4.04e+01 1scjB 71 4.05e+01 1scjB d.58.3.2 39069 2bjuA 453 4.12e+01 1ojrA 274 4.17e+01 c.74.1.1 93147 2bneA 241 4.20e+01 1gpeA 587 4.21e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1qsmA 152 4.26e+01 1qsmA d.108.1.1 40808 1hbkA 94 4.28e+01 1aca a.11.1.1 60887 1i9zA 347 4.31e+01 1i9yA d.151.1.2 62102 1h9mA 145 4.33e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834 1cruA 454 4.37e+01 1c9uA b.68.2.1 27617 1wr2A 238 4.40e+01 1x88A 359 4.41e+01 1sbyA 254 4.46e+01 1gy7A 125 4.50e+01 d.17.4.2 70738 2ae2A 260 4.59e+01 1bdb c.2.1.2 29945 2dcnA 311 4.65e+01 1ycdA 243 4.66e+01 1uirA 314 4.70e+01 c.66.1.17 99429 1dlyA 164 4.73e+01 1dlyA a.1.1.1 14983 1oxxK 353 4.76e+01 b.40.6.3,c.37.1.12 93715,93716 1zkjA 359 4.78e+01 1qksA 567 4.78e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 2f4iA 197 4.83e+01 2fp1A 166 4.91e+01 2bwrA 401 4.98e+01 1w0dA 337 5.01e+01 2af4C 333 5.17e+01 1i8dA 213 5.30e+01 b.43.4.3,b.43.4.3 61953,61954 1zkkA 167 5.37e+01 2bkrA 212 5.44e+01 1m15A 357 5.53e+01 a.83.1.1,d.128.1.2 78368,78369 1zd0A 150 5.65e+01 1njhA 119 5.75e+01 b.128.1.1 85787 1otjA 283 5.84e+01 b.82.2.5 93517 1b5l 172 5.92e+01 1b5l a.26.1.3 16900 2czrA 226 5.96e+01 1zboA 210 5.97e+01 1zk4A 251 6.05e+01 1i8nA 126 6.05e+01 1i8nA g.10.1.2 61976 1wznA 252 6.15e+01 2gp4A 628 6.16e+01 1yqyA 523 6.18e+01 1v3vA 333 6.21e+01 b.35.1.2,c.2.1.1 108345,108346 1r3eA 309 6.22e+01 b.122.1.1,d.265.1.2 96907,96908 1wq3A 322 6.24e+01 1sefA 274 6.24e+01 b.82.1.11 105452 1vyoA 128 6.36e+01 1rq2A 382 6.37e+01 c.32.1.1,d.79.2.1 105048,105049 2frnA 278 6.39e+01 1t1jA 125 6.42e+01 c.137.1.1 106249 1gxuA 91 6.43e+01 d.58.10.1 76378 1pg4A 652 6.57e+01 e.23.1.1 88067 1tyv 542 6.63e+01 1tyv b.80.1.6 28038 1xw3A 110 6.64e+01 1x54A 434 6.69e+01 1nls 237 6.71e+01 1nls b.29.1.1 23928 1obbA 480 6.76e+01 c.2.1.5,d.162.1.2 86760,86761 1mw9X 592 6.78e+01 e.10.1.1 91480 1uaiA 224 6.80e+01 b.29.1.18 107761 2ddfA 257 6.82e+01 1ugpA 203 6.92e+01 d.149.1.1 107831 1gky 187 6.96e+01 1gky c.37.1.1 31839 1xfkA 336 6.96e+01 1t3tA 1303 6.98e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1auiB 169 7.00e+01 1auiB a.39.1.5 17325 1xm7A 195 7.01e+01 1r45A 204 7.04e+01 1aba 87 7.06e+01 1aba c.47.1.1 32760 1vflA 356 7.08e+01 2atpB 115 7.15e+01 1z4rA 168 7.17e+01 1bn8A 420 7.17e+01 1pcl b.80.1.1 28022 1whrA 124 7.19e+01 1o98A 511 7.19e+01 c.105.1.1,c.76.1.3 86684,86685 1s5pA 235 7.25e+01 c.31.1.5 98569 1o5uA 101 7.28e+01 b.82.1.8 92518 1g0oA 283 7.33e+01 1ybvA c.2.1.2 60181 1y1pA 342 7.33e+01 1wv2A 265 7.35e+01 1o6sB 105 7.42e+01 b.1.6.1 81096 1lvoA 302 7.48e+01 b.47.1.4 74284 2fsxA 148 7.52e+01 1q1vA 70 7.72e+01 a.159.4.1 104479 1j7xA 302 7.76e+01 c.14.1.2 66425 1khbA 625 7.80e+01 c.91.1.1,c.109.1.1 68606,68607 1ro0A 216 7.83e+01 d.264.1.2 97664 1r1mA 164 7.93e+01 d.79.7.1 96820 2h2bA 107 7.98e+01 2aebA 322 8.01e+01 1nwaA 203 8.04e+01 d.58.28.1 86295 1u7eB 154 8.14e+01 1jv1A 505 8.16e+01 c.68.1.5 71892 1iv8A 720 8.25e+01 b.71.1.1,c.1.8.1 76842,76843 1cs1A 386 8.32e+01 1ibjA c.67.1.3 34399 2fueA 262 8.32e+01 1iy8A 267 8.33e+01 c.2.1.2 83774 2dbsA 90 8.36e+01 1kqqA 139 8.37e+01 a.4.3.1 72885 1f60A 458 8.41e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1kktA 511 8.42e+01 a.102.2.1 68687 1mqvA 125 8.42e+01 a.24.3.2 79415 1nt2A 210 8.43e+01 c.66.1.3 86149 1txuA 273 8.47e+01 a.222.1.1 107439 1yn4A 99 8.47e+01 1m5wA 243 8.54e+01 c.1.24.1 84836 1f6fA 199 8.55e+01 1f6fA a.26.1.1 16839 2agyA 361 8.59e+01 1y0hA 105 8.69e+01 1gqiA 708 8.73e+01 c.1.8.10,d.92.2.2 76279,76280 1ulyA 192 8.87e+01 1rylA 167 8.91e+01 d.276.1.1 105124 1m1nA 491 8.92e+01 c.92.2.3 78417