# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 1.63e-24 1ci0A b.45.1.1 25753 1g79A 218 1.91e-24 1ci0A b.45.1.1 25752 1nrgA 261 3.45e-21 b.45.1.1 80694 1t9mA 214 1.69e-19 1ty9A 222 2.80e-18 1rfeA 162 8.91e-17 2fhqA 141 6.79e-16 1vl7A 157 1.70e-14 b.45.1.1 108732 2fg9A 178 3.67e-14 2asfA 137 3.22e-12 2aq6A 147 1.82e-11 1w9aA 147 1.31e-10 1xxoA 147 1.49e-10 2arzA 247 1.94e-09 2furA 209 7.60e-09 1w3oA 216 5.33e-07 1xhnA 184 2.26e-06 1flmA 122 3.43e-05 1axj b.45.1.1 25747 1ejeA 192 1.75e-04 1ejeA b.45.1.2 25757 1i8dA 213 8.16e-01 b.43.4.3,b.43.4.3 61953,61954 1jdpA 441 2.03e+00 c.93.1.1 62906 1q6uA 245 2.06e+00 d.26.1.1 95998 2g9zA 348 2.53e+00 1i0rA 169 2.72e+00 1i0rA b.45.1.2 61489 1i0sA 169 3.07e+00 1i0rA b.45.1.2 61491 1pvtA 238 3.23e+00 c.74.1.1 95189 1nt2A 210 3.80e+00 c.66.1.3 86149 1q6hA 224 4.18e+00 d.26.1.1 95975 1dp4A 435 4.26e+00 1dp4A c.93.1.1 35710 1xb2B 291 4.95e+00 2d93A 134 5.73e+00 1m2kA 249 7.07e+00 c.31.1.5 84754 1wisA 124 7.65e+00 1kzlA 208 8.49e+00 b.43.4.3,b.43.4.3 77635,77636 2etvA 346 9.07e+00 1cfzA 162 1.00e+01 1cfzA c.56.1.1 33754 1winA 143 1.01e+01 1ko3A 230 1.01e+01 d.157.1.1 90974 1ubeA 349 1.04e+01 c.37.1.11,d.48.1.1 88412,88413 1s2wA 295 1.04e+01 c.1.12.7 98407 1m40A 263 1.19e+01 e.3.1.1 74437 1ermA 263 1.25e+01 1btl e.3.1.1 42690 1ytaA 180 1.26e+01 1q7bA 244 1.28e+01 c.2.1.2 96026 1ax4A 467 1.32e+01 1ax4A c.67.1.2 34391 1zyeA 220 1.37e+01 1y8qA 346 1.38e+01 1ne9A 335 1.38e+01 d.108.1.4,d.108.1.4 91839,91840 1g5tA 196 1.42e+01 1g5rA c.37.1.11 32366 1xezA 721 1.52e+01 1ujqA 305 1.58e+01 c.1.12.7 99463 2ag5A 246 1.68e+01 1c25 161 1.94e+01 1c25 c.46.1.1 32698 1vpbA 451 2.06e+01 1gwmA 153 2.08e+01 b.18.1.19 83348 1wv2A 265 2.14e+01 1btl 263 2.21e+01 1btl e.3.1.1 42691 1qyaA 307 2.22e+01 d.21.1.2,d.21.1.2 104653,104654 2gnoA 305 2.25e+01 1o5oA 221 2.25e+01 c.61.1.1 92509 1zi8A 236 2.26e+01 1ixkA 315 2.34e+01 c.66.1.38 90716 1qfoA 119 2.35e+01 1qfoA b.1.1.1 19708 1fsz 372 2.39e+01 1fsz c.32.1.1,d.79.2.1 31750,39802 1wq3A 322 2.41e+01 2pfkA 320 2.47e+01 3pfk c.89.1.1 35577 2d4rA 147 2.57e+01 1khtA 192 2.57e+01 c.37.1.1 84401 1yrbA 262 2.59e+01 1bg1A 722 2.64e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 2bwrA 401 2.71e+01 1rdr 461 2.73e+01 1rdr e.8.1.4 43116 1cc1L 498 2.80e+01 1h2rL e.18.1.1 43301 1vmaA 306 2.94e+01 a.24.13.1,c.37.1.10 108887,108888 1pfkA 320 3.22e+01 3pfk c.89.1.1 35575 1sdjA 310 3.24e+01 d.21.1.2,d.21.1.2 98807,98808 1ojrA 274 3.24e+01 c.74.1.1 93147 1s3rA 535 3.31e+01 1din 236 3.45e+01 1din c.69.1.9 34682 1uscA 178 3.48e+01 b.45.1.2 99860 1zymA 258 3.49e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 1r1mA 164 3.50e+01 d.79.7.1 96820 1ki9A 192 3.54e+01 c.37.1.1 84404 2bdwA 362 3.58e+01 1jkgA 140 3.59e+01 d.17.4.2 66795 1b6a 478 3.78e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1yoaA 159 3.79e+01 1v3vA 333 3.81e+01 b.35.1.2,c.2.1.1 108345,108346 1y7bA 542 3.88e+01 1h9mA 145 3.98e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834 1am2 199 4.10e+01 1am2 b.86.1.2 28381 1o0pA 104 4.19e+01 d.58.7.1 86535 1kt6A 183 4.25e+01 b.60.1.1 84466 1gj7B 253 4.46e+01 1jwgA 147 4.51e+01 a.118.9.2 71911 1v1pA 211 4.61e+01 b.40.2.2,d.15.6.1 108268,108269 1mo7A 213 4.86e+01 d.220.1.1 85028 1q5xA 161 5.01e+01 c.8.7.1 95947 2b2yA 187 5.13e+01 2biwA 490 5.20e+01 1j7nA 776 5.27e+01 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1yyaA 250 5.27e+01 1e3dB 542 5.49e+01 1h2rL e.18.1.1 59189 2aefA 234 5.50e+01 2bbeA 108 5.52e+01 1j9aA 184 5.57e+01 c.55.3.5 84135 2c4nA 250 5.59e+01 1f5mA 180 5.64e+01 1f5mB d.110.2.1 40895 1tdzA 272 5.71e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1pq4A 291 5.95e+01 c.92.2.2 94995 1vlpA 441 6.00e+01 d.41.2.2,d.41.2.3 108840,108841 1pyaB 228 6.04e+01 1pyaB 1nnjA 271 6.08e+01 a.156.1.2,b.113.1.1,g.39.1.8 80669,80670,80671 1ryaA 160 6.42e+01 d.113.1.5 105122 1rz1A 161 6.47e+01 b.45.1.2 98124 1c5yB 253 6.49e+01 5ptp 1l2tA 235 6.65e+01 c.37.1.12 73514 1vyoA 128 6.72e+01 1r6lA 239 6.77e+01 d.14.1.4,d.101.1.1 97153,97154 1q1fA 151 6.87e+01 a.1.1.2 104476 1q3iA 214 6.88e+01 d.220.1.1 104524 1nonA 179 6.89e+01 c.61.1.1 103868 1cs8A 316 6.93e+01 1cs8A d.3.1.1 37065 1w8iA 156 6.97e+01 1uzmA 247 7.00e+01 1sy6A 204 7.03e+01 b.1.1.4,b.1.1.4 106111,106112 1ye8A 178 7.11e+01 1knwA 425 7.28e+01 b.49.2.3,c.1.6.1 90969,90970 1wsrA 375 7.43e+01 1xznA 179 7.48e+01 2gukA 120 7.59e+01 1hbq 183 7.61e+01 1aqb b.60.1.1 27078 1i8nA 126 7.78e+01 1i8nA g.10.1.2 61976 1ujkA 147 7.86e+01 a.118.9.2 99457 1ve1A 304 7.90e+01 1vl8A 267 7.92e+01 c.2.1.2 108733 1oj6A 151 7.97e+01 a.1.1.2 93088 1spxA 278 8.00e+01 c.2.1.2 98958 1x7dA 350 8.08e+01 1cf1A 404 8.14e+01 1cf1A b.1.18.11,b.1.18.11 21907,21908 1lrzA 426 8.14e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1vpqA 273 8.22e+01 1wgbA 159 8.28e+01 1zoyC 140 8.30e+01 1colA 204 8.33e+01 1a87 f.1.1.1 43378 1qksA 567 8.43e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1lfpA 249 8.55e+01 e.39.1.1 73885 1u3eM 174 8.57e+01 d.4.1.3,d.285.1.1 107640,107641 2b4yA 271 8.63e+01 2abqA 306 8.66e+01 2bkrA 212 8.73e+01 1pjjA 271 8.74e+01 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1w7bA 339 8.75e+01 1kcmA 270 8.82e+01 d.129.3.4 72300 1h6zA 913 8.85e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 2cwpA 112 8.86e+01 3vub 101 8.95e+01 3vub b.34.6.1 24613 1p1mA 406 8.95e+01 b.92.1.4,c.1.9.9 87696,87697 1lvoA 302 8.98e+01 b.47.1.4 74284