Best Alignments for T0379

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2fdrA/T0379-2fdrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fdrA/T0379-2fdrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5684e-191.42e-90
2b0cA/T0379-2b0cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b0cA/T0379-2b0cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1478e-195.38e-78
1x42A/T0379-1x42A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x42A/T0379-1x42A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8133e-199.85e-82
1jud/T0379-1jud-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jud/T0379-1jud-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.3348e-191.30e-81 1qq5A c.108.1.1
2gfhA/T0379-2gfhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gfhA/T0379-2gfhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.2212e-185.58e-87
1te2A/T0379-1te2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1te2A/T0379-1te2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1719e-172.93e-84 c.108.1.6
1zd3A/T0379-1zd3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zd3A/T0379-1zd3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4580e-178.59e-73
2ah5A/T0379-2ah5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ah5A/T0379-2ah5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1759e-167.20e-77
2go7A/T0379-2go7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2go7A/T0379-2go7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3953e-162.05e-73
2fi1A/T0379-2fi1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fi1A/T0379-2fi1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2825e-144.19e-75

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001